Cxcl6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Cxcl6 0.03 0.02 1.3e-03 0.02 0.03 0.03 0.01 2.6e-03 3.1e-04 6.9e-04 1.3e-02
2 Brain gene expression Cxcl6 0.06 0.03 4.5e-05 0.03 0.05 0.05 0.02 7.0e-04 3.1e-05 2.2e-05 6.7e-03
3 pVTA gene expression Cxcl6 0.11 0.06 1.4e-04 0.14 0.1 0.12 0.07 1.3e-06 3.4e-05 7.1e-06 7.5e-04
4 Liver gene expression Cxcl6 0.04 0.03 3.6e-03 0.02 0.01 0.01 0.01 3.4e-03 7.9e-03 3.3e-02 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.13.21.7-0.2-1.4-1.8
Area under the delay curve0.70.81.8-0.50.31.01.4
BMI with tail1.03.16.92.61.2-1.7-1.1
BMI without tail0.20.50.70.80.3-0.6-0.8
Body weight0.52.14.10.62.0-1.0-1.7
Weight adjusted by age0.70.82.00.5-0.6-0.9-1.4
Bone surface1.42.45.11.30.4-1.6-2.3
Bone volume1.22.03.41.50.2-1.6-1.8
Breakpoint value in progressive ratio session0.20.20.60.20.5-0.70.4
Number of licking bursts0.10.10.2-0.5-0.30.2-0.0
Context. condit. distance diff. score0.81.02.60.51.60.60.9
Locomotion velocity, session 10.50.61.30.91.1-0.20.5
Locomotion distance, session 10.60.71.90.61.40.20.8
Locomotion velocity, session 20.81.02.31.11.5-0.4-0.3
Locomotion distance, session 20.81.22.6-0.11.20.71.6
Locomotion velocity, session 30.10.10.50.30.70.2-0.0
Locomotion distance, session 30.60.61.21.11.0-0.50.1
Stereotopy head waving bouts, day 30.20.30.9-0.30.10.40.9
Stereotopy head waving duration, day 30.40.50.8-0.8-0.60.90.5
Locomotion velocity, session 70.30.30.5-0.4-0.10.60.7
Locomotion distance, session 70.30.41.1-0.3-1.00.30.4
Stereotopy head waving bouts, day 71.01.22.71.01.7-0.9-0.1
Stereotopy head waving duration, day 70.40.51.70.31.3-0.20.4
Locomotion velocity, session 80.50.61.00.70.50.81.0
Locomotion distance, session 80.91.32.50.91.60.61.3
Degree of sensitization distance0.80.81.7-1.1-1.30.70.1
Degree of sensitization stereotypy0.80.82.70.61.6-0.50.2
Conditioned locomotion1.41.74.0-1.2-2.01.10.4
Cocaine response after cond. corrected0.40.41.2-0.7-1.10.20.1
Cocaine response after cond. not corrected0.50.61.00.3-0.9-0.6-1.0
Cocaine response before conditioning2.32.75.01.80.4-1.6-2.2
Saline control response0.20.30.60.80.3-0.8-0.2
Bone: connectivity density0.91.32.91.2-0.5-0.8-1.7
Bone: cortical apparent density0.20.30.60.50.3-0.30.8
Bone: cortical area0.81.22.31.3-0.2-1.5-1.0
Bone: cortical porosity0.60.61.8-0.7-1.30.30.3
Bone: cortical porosity0.40.51.6-0.5-1.30.20.0
Bone: cortical thickness1.42.34.62.1-0.5-2.0-0.8
Bone: cortical thickness0.81.02.11.0-0.6-1.5-0.6
Bone: cortical tissue density0.20.30.60.50.4-0.30.8
Condit. Reinf. active minus inactive responses0.40.41.50.11.2-0.10.2
Condit. Reinf. active-inactive response ratio0.60.61.5-0.11.2-0.10.9
Condit. Reinf. active responses0.40.41.50.31.2-0.20.3
Condit. Reinf. inactive responses0.30.30.50.70.5-0.4-0.7
Incentive salience index mean0.10.10.30.10.50.20.3
Condit. Reinf. lever presses0.00.10.10.3-0.3-0.1-0.1
Condit. Reinf. active minus inactive responses1.11.33.11.21.8-0.9-0.3
Condit. Reinf. active-inactive response ratio1.41.52.90.80.7-1.3-1.7
Condit. Reinf. active responses1.11.55.20.82.3-0.50.2
Condit. Reinf. inactive responses0.60.71.4-0.01.10.51.2
Condit. Reinf. lever presses0.30.40.6-0.80.60.6-0.7
Condit. Reinf. lever reinforcers received1.01.45.00.72.2-0.40.3
Conditioned reinforcement - actives0.60.62.0-0.40.00.41.4
Conditioned reinforcement - inactives0.80.92.0-0.3-1.4-0.6-1.2
Conditioned locomotion1.01.13.1-1.7-0.80.80.4
Patch foraging indifference point 0 sec0.10.10.30.20.60.30.0
Patch foraging indifference point AUC1.82.05.0-1.3-2.21.0-0.7
Delay disc. indifference point, 0s delay0.40.51.10.41.1-0.30.7
Delay disc. indifference point, 16s delay0.80.82.3-0.10.60.81.5
Delay disc. indifference point, 2s delay0.70.71.0-1.00.41.00.9
Delay disc. indifference point, 24s delay1.41.42.3-1.3-0.41.51.2
Delay disc. indifference point, 4s delay1.61.64.3-0.6-0.11.42.1
Delay disc. indifference point, 8s delay0.20.20.80.2-0.30.10.9
Indifference point function ln k1.62.25.31.42.3-1.10.7
Indifference point function log k1.62.25.31.42.3-1.10.7
Patch foraging total patch changes 0 sec0.00.10.20.10.10.50.3
Patch foraging total patch changes 12 sec1.21.62.1-0.9-1.11.51.5
Patch foraging total patch changes 18 sec0.10.10.20.10.5-0.4-0.2
Patch foraging total patch changes 24 sec0.60.81.4-0.8-0.20.91.2
Patch foraging total patch changes 6 sec1.11.72.6-1.1-1.61.60.6
Patch foraging time to switch 0 sec0.40.61.41.20.7-0.8-0.0
Patch foraging water rate 0 sec0.61.01.9-1.3-1.40.8-0.1
Patch foraging water rate 12 sec0.60.91.4-1.0-1.20.90.5
Patch foraging water rate 18 sec0.50.72.6-0.31.60.10.2
Patch foraging water rate 24 sec0.10.10.2-0.30.4-0.40.1
Patch foraging water rate 6 sec1.01.52.6-1.6-0.11.41.3
Seeking ratio, delayed vs. immediate footshock1.01.22.4-1.1-0.11.11.6
Distance traveled before self-admin1.51.63.7-1.9-0.21.01.3
Distance traveled after self-admin3.03.47.9-2.00.31.22.8
Extensor digitorum longus weight3.814.830.45.51.1-4.3-3.1
Bone: elastic displacement1.92.24.12.00.2-1.8-1.2
Bone: elastic work2.22.94.82.2-0.3-2.2-1.4
Bone: endosteal estimation0.10.31.0-1.00.50.10.2
Bone: endosteal perimeter0.20.41.2-0.40.4-0.3-1.1
Epididymis fat weight0.51.23.3-0.9-0.10.71.8
Delta time in closed arm before/after self-admin0.10.10.20.10.40.3-0.2
Delta time in open arm before/after self-admin1.71.72.2-1.4-1.51.30.9
Diff in mean of infusions in LGA sessions1.41.63.60.81.9-1.3-0.7
Delay discount exponential model param0.90.91.90.7-0.0-1.2-1.4
Extinction: sum of active levers before priming1.51.53.0-1.6-0.21.70.6
Active lever presses in extinction session 61.11.03.6-0.61.9-0.2-0.3
Bone: final force0.10.10.4-0.10.0-0.6-0.3
Bone: final moment0.10.10.2-0.30.1-0.5-0.1
Food consumed during 24 hour testing period0.10.10.30.3-0.6-0.1-0.4
Glucose1.42.04.4-0.82.10.61.7
Heart weight0.20.20.9-0.2-0.20.0-0.9
Delay discount hyperbolic model param1.11.12.20.80.0-1.3-1.5
Intermittent access intake day 1-15 change0.50.51.00.71.0-0.50.4
Intermittent access intake escalation0.40.41.00.41.0-0.30.6
Intermittent access intake escalation 20.20.20.6-0.80.00.30.3
Intermitt. access day 1 inactive lever presses0.50.61.91.4-0.5-0.40.0
Intermitt. access day 15 inactive lever presses1.31.53.50.4-1.0-1.1-1.9
Intermitt. access escalation Index2.11.94.30.72.1-1.6-0.1
Intermittent access day 1 total infusions1.01.22.7-1.6-0.21.4-0.1
Intermittent access day 15 total infusions0.70.81.6-1.3-0.01.20.4
Intermittent access terminal intake (last 3 days)1.61.84.3-2.1-0.31.60.5
Intermittent access total infusions1.31.43.3-1.8-0.41.50.2
Intermittent access day 1 locomotion0.40.40.9-0.90.30.9-0.1
Intermittent access day 15 total locomotion2.83.15.8-1.9-0.32.41.7
Intermittent access total locomotion1.51.72.5-1.50.71.61.2
Intermittent access standard deviation0.50.50.9-0.5-0.91.00.1
Left kidney weight0.61.62.4-1.6-0.61.3-1.4
Right kidney weight0.82.34.6-2.1-1.11.5-1.0
Cocaine induced anxiety0.91.03.10.9-0.2-1.8-0.5
Post-drug Anxiety0.10.10.20.00.3-0.40.4
Baseline Anxiety2.62.76.6-1.10.71.62.6
Tail length0.30.82.9-1.70.40.5-0.1
Length with tail0.62.46.7-2.61.01.4-0.1
Length without tail0.61.32.5-1.60.71.30.6
Times rat made contact with spout2.12.47.1-1.1-2.70.9-0.7
Lifetime Intake1.11.33.2-1.8-0.61.3-0.0
Liver weight, left0.91.53.5-1.2-0.50.91.9
Liver weight, right1.93.15.8-2.0-0.81.52.4
Locomotor activity0.20.30.3-0.6-0.60.6-0.1
Locomotor testing distance0.10.10.3-0.1-0.10.50.4
Locomotor testing rearing0.10.20.40.40.70.1-0.0
Locomotion in novel chamber0.40.51.0-0.5-0.11.01.0
Locomotion in novel chamber post-restriction0.91.12.8-0.9-0.71.7-0.4
Fecal boli incidents, locomotor time 11.41.55.2-0.3-2.3-0.7-0.5
Change in fecal boli incidents, locomotor task1.21.14.20.42.1-0.30.1
Time >=10cm from walls, locomotor time 11.11.13.10.50.0-1.1-1.8
Bouts of movement, locomotor time 10.30.40.7-0.8-0.10.70.5
Total resting periods, locomotor time 10.70.71.2-1.1-0.40.71.0
Rest time, locomotor task time 10.50.61.4-0.8-0.40.21.2
Distance moved, locomotor task time 10.10.10.5-0.10.20.2-0.7
Vertical activity count, locomotor time 10.60.61.4-0.60.81.20.2
Time >=10cm from walls, locomotor time 20.70.81.21.0-0.3-1.1-0.9
Bouts of movement, locomotor time 21.31.43.6-0.90.31.91.1
Total resting periods, locomotor time 21.11.22.8-0.90.21.71.0
Rest time, locomotor task time 22.73.15.4-1.8-2.31.41.3
Distance moved, locomotor task time 22.32.74.51.62.1-1.4-1.4
Vertical activity count, locomotor time 22.32.58.81.03.0-0.5-0.0
Light reinforcement 10.51.02.0-0.7-0.80.9-1.4
Light reinforcement 21.62.14.5-1.2-2.11.3-1.0
Bone: marrow area0.10.30.8-0.90.50.00.2
Bone: maximum diameter0.71.32.50.80.1-1.4-1.6
Bone: maximum force0.10.20.3-0.2-0.6-0.4-0.5
Bone: maximum moment0.10.10.3-0.4-0.5-0.2-0.2
Mean time between licks in bursts0.10.20.6-0.80.10.2-0.2
Mean num. licks in bursts0.60.72.0-0.6-1.40.6-0.1
Cd content in liver0.50.61.60.0-0.4-0.7-1.3
Co content in liver0.20.20.5-0.7-0.20.60.3
Cu content in liver1.21.44.2-0.7-2.00.90.6
Fe content in liver1.21.42.21.30.5-1.2-1.5
K content in liver3.73.74.7-1.5-2.22.02.0
Mg content in liver4.34.48.9-2.0-3.02.01.0
Mn content in liver1.11.22.21.51.1-1.00.6
Na content in liver3.63.85.1-1.5-2.32.21.6
Rb content in liver0.30.30.90.20.9-0.6-0.0
Se content in liver0.80.92.5-0.7-0.81.60.3
Sr content in liver1.71.53.60.9-0.2-1.3-1.9
Zn content in liver0.20.30.6-0.1-0.30.60.8
Bone: minimum diameter0.71.34.4-2.1-0.30.70.0
Time in familiar zone, hab. session 10.60.51.30.0-1.10.60.7
Time in novel zone, hab. session 10.90.92.0-1.21.40.20.1
Total zone transitions, hab. session 11.21.72.7-0.61.01.61.6
Total locomotion distance, hab. session 12.53.56.3-1.8-0.92.51.9
Locomotion velocity, hab. session 11.72.44.7-1.2-0.92.21.6
Time in familiar zone, hab. session 22.02.05.4-1.1-2.31.0-0.6
Time in novel zone, hab. session 22.62.68.00.92.8-1.00.9
Total zone transitions, hab. session 20.40.51.30.21.10.30.6
Total locomotion distance, hab. session 20.50.61.1-0.70.41.10.9
Locomotion velocity, hab. session 20.70.91.8-0.80.21.41.1
Novel to familiar place preference ratio0.20.20.3-0.5-0.10.60.2
Novelty place preference0.40.40.6-0.8-0.40.80.1
Time in novel zone, NPP test0.40.50.9-0.9-0.10.90.4
Total zone transitions, NPP test1.11.52.71.71.5-1.00.1
Total locomotion distance, NPP test0.10.10.30.0-0.20.60.2
Locomotion velocity, NPP test0.10.10.40.60.00.1-0.2
Intraocular pressure0.30.40.7-0.9-0.00.4-0.7
Delta distance traveled before/after self-admin0.80.92.30.31.1-0.01.5
Delta ambulatory time before/after self-admin1.41.52.70.81.5-0.61.7
Parametrial fat weight0.20.30.50.10.6-0.7-0.7
Pavlov. Cond. lever latency0.50.61.60.4-0.0-0.8-1.3
Pavlov. Cond. magazine entry latency0.50.71.2-0.60.51.10.9
Pavlov. Cond. change in total contacts0.40.41.30.00.60.21.1
Pavlov. Cond. index score0.70.92.6-0.20.40.81.6
Pavlov. Cond. latency score0.50.61.9-0.20.20.61.4
Pavlov. Cond. lever contacts0.60.72.00.20.90.31.4
Pavlov. Cond. magazine entry number0.50.71.20.0-1.0-0.6-1.1
Pavlov. Cond. intertrial magazine entries0.20.30.8-0.10.00.40.9
Pavlov. Cond. lever-magazine prob. diff.0.70.92.7-0.20.50.81.6
Pavlov. Cond. response bias0.80.92.2-0.40.80.81.5
Pavlov. Cond. lever latency0.60.81.90.70.7-0.61.4
Pavlov. Cond. magazine entry latency0.30.41.0-0.4-0.40.2-1.0
Pavlov. Cond. change in total contacts0.81.02.4-0.8-1.60.8-0.7
Pavlov. Cond. index score0.70.92.2-0.7-1.00.3-1.5
Pavlov. Cond. latency score0.70.82.3-0.3-1.0-0.0-1.5
Pavlov. Cond. lever contacts1.11.62.3-1.2-1.50.9-1.2
Pavlov. Cond. magazine entry number0.20.20.80.20.40.10.9
Pavlov. Cond. intertrial magazine entries0.10.20.60.20.8-0.2-0.1
Pavlov. Cond. lever-magazine prob. diff.0.70.92.0-0.7-1.10.4-1.4
Pavlov. Cond. response bias0.81.11.6-1.3-1.01.0-0.9
Time in closed arm before self-admin0.91.01.41.20.8-0.8-1.0
Time in closed arm after self-admin1.11.12.01.41.3-0.4-0.8
Time in open arm before self-admin0.50.61.50.31.2-0.8-0.3
Time in open arm after self-admin2.52.85.1-2.3-1.71.60.8
Bone: periosteal estimation0.20.41.00.20.2-1.0-0.7
Bone: periosteal perimeter0.20.30.80.2-0.3-0.6-0.9
Bone: post-yield work1.52.15.0-2.2-1.21.40.3
Progressive ratio test 1 active lever presses3.13.27.8-2.8-0.92.10.1
Progressive ratio test 1 breakpoint2.72.96.8-2.6-0.82.00.1
Progressive ratio test 1 inactive lever presses0.80.81.9-0.8-1.40.90.1
Progressive ratio test 2 active lever presses2.22.35.4-2.3-1.21.50.5
Progressive ratio test 2 breakpoint1.51.73.7-1.9-1.11.30.4
Progressive ratio test 2 inactive lever presses1.01.22.5-1.3-1.60.80.2
Incentive Sensitization - Responses0.20.20.6-0.80.3-0.20.1
Incentive Sensitization - Breakpoint0.20.20.8-0.90.2-0.20.1
Sum of active levers in priming session hrs 5-60.30.30.6-0.6-0.80.30.1
Progressive ratio0.50.61.10.8-0.7-1.0-0.3
Food seeking constrained by brief footshock0.30.40.60.80.6-0.6-0.6
Seeking ratio, punishment vs. effort0.20.30.5-0.60.20.70.4
Retroperitoneal fat weight0.41.34.2-0.72.00.60.6
Reaction time number correct0.60.93.10.11.8-0.4-0.5
Reaction time mean minus median0.20.30.7-0.7-0.3-0.1-0.8
Reaction time mean minus median AUC0.30.40.7-0.9-0.7-0.1-0.7
Reaction time num false alarms1.31.74.1-0.8-0.21.52.0
Reaction time num false alarms AUC1.31.94.3-0.80.21.52.1
Reaction time trials correct on left0.60.93.10.11.8-0.4-0.5
Reaction time trials on left0.71.03.40.11.8-0.5-0.5
Reaction time mean0.20.20.50.10.4-0.7-0.5
Reaction time mean AUC0.10.10.4-0.10.6-0.4-0.1
Median of all reaction times0.20.20.60.20.7-0.6-0.2
Reaction time omissions1.41.93.11.41.4-1.8-0.6
Reaction time false alarm rate1.62.24.1-0.9-0.81.82.0
Reaction time premature initiation rate0.10.10.1-0.3-0.40.40.3
Reaction time premature initiations0.10.10.2-0.30.50.1-0.0
Std. dev. reaction times0.10.10.2-0.20.2-0.5-0.3
Reaction time trials completed0.71.03.40.11.8-0.5-0.5
Reaction time trials AUC0.91.34.40.12.1-0.6-0.5
Run reversals in cocaine runway, females0.30.30.40.50.6-0.60.2
Run reversals in cocaine runway, males1.31.21.90.91.3-0.8-1.4
Latency to leave start box in cocaine runway0.40.51.1-0.51.00.7-0.3
Latency to leave start box in cocaine runway, F0.60.71.6-1.10.11.2-0.2
Latency to leave start box in cocaine runway, M1.41.33.00.71.7-1.1-0.8
Std. dev. time between licks in bursts0.30.30.7-0.8-0.20.60.5
Total sessions with >9 infusions0.30.30.9-0.20.2-0.3-0.9
Short access day 1 total inactive lever presses0.10.10.4-0.2-0.60.20.1
Short access day 10 total inactive lever presses0.80.92.41.6-0.7-0.6-0.3
Short access day 1 total infusions1.01.01.7-1.3-1.11.1-0.4
Short access day 10 total infusions0.91.02.3-1.5-0.51.2-0.4
Short access total infusions0.30.31.0-1.0-0.20.3-0.4
Short access day 1 locomotion1.51.62.7-1.60.11.61.1
Short access day 10 total locomotion0.40.40.9-0.4-0.00.80.9
Short access total locomotion0.20.20.4-0.60.00.50.7
One hour access (0.3 mA shock)1.82.14.5-2.1-0.11.80.9
Compulsive drug intake1.01.02.91.7-0.2-1.0-0.2
One hour access (shock baseline)2.83.38.0-2.8-0.82.00.7
Social response proportion1.11.23.2-0.8-1.80.31.0
Social responses0.20.30.7-0.40.10.80.6
Social time0.10.20.4-0.3-0.60.20.4
Soleus weight0.82.46.72.60.7-1.20.9
Bone: stiffness0.81.32.2-1.5-0.51.31.0
Tibialis anterior weight0.72.46.42.5-0.2-1.5-1.0
Time to tail flick, vehicle, before self-admin0.40.41.0-1.0-0.60.50.0
Time to tail flick, vehicle, after self-admin0.50.51.30.31.10.10.9
Time to tail flick, test, before self-admin0.10.10.40.40.1-0.00.6
Time to tail flick, test, after self-admin2.32.47.7-0.92.80.9-0.4
Delta time to tail flick, vehicle, before/after SA0.70.71.80.81.3-0.30.5
Delta time to tail flick, test, before/after SA0.90.81.3-1.10.90.8-0.7
Tibia length0.30.91.70.11.3-1.30.3
Ambulatory time before self-admin1.81.93.7-1.90.81.31.2
Ambulatory time after self-admin3.53.88.6-1.61.61.22.9
Bone: tissue strength0.70.71.3-1.1-0.41.10.5
Total heroin consumption1.72.04.9-0.72.20.21.6
Bone: trabecular number0.40.61.11.0-0.3-0.7-0.9
Bone: trabecular spacing0.50.71.6-0.6-0.70.61.3
Bone: trabecular thickness1.41.74.11.2-0.4-0.9-2.0
Bone: trabecular tissue density0.10.10.30.60.2-0.5-0.1
Water consumed over 24 hours0.40.50.8-0.9-0.60.8-0.5
Number of responses in last shaping day1.11.12.8-0.7-0.81.70.6