Cst6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Cst6 0.22 0.11 1.1e-10 0.2 0.2 0.21 0.21 3.9e-11 5.1e-11 2.0e-11 2.1e-11
2 BLA mRNA stability Cst6 0.06 0.04 6.6e-03 0.01 0.02 0 0.01 6.9e-02 2.7e-02 2.9e-01 8.9e-02
3 Brain gene expression Cst6 0.03 0.03 9.3e-03 0.02 0.02 0.03 0.02 6.8e-03 8.7e-03 1.5e-03 2.6e-03
4 Adipose gene expression Cst6 0.37 0.12 0.0e+00 0.19 0.21 0.21 0.21 1.6e-20 2.9e-23 5.2e-23 2.2e-23

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.05.3-0.9-0.51.32.3
Area under the delay curve0.80.81.8-0.0-0.80.91.3
BMI with tail2.99.514.0-3.40.43.53.7
BMI without tail1.53.24.7-1.90.22.12.2
Body weight1.77.118.3-4.33.0-0.11.2
Weight adjusted by age1.41.62.9-1.51.7-0.9-0.6
Bone surface1.73.07.3-2.71.30.11.7
Bone volume0.91.52.9-1.50.20.91.7
Breakpoint value in progressive ratio session1.61.83.5-1.91.8-0.6-0.3
Number of licking bursts0.10.10.3-0.60.40.0-0.1
Context. condit. distance diff. score1.31.62.41.5-1.61.20.4
Locomotion velocity, session 10.10.10.2-0.20.4-0.2-0.5
Locomotion distance, session 10.91.22.6-1.1-0.01.01.6
Locomotion velocity, session 21.41.64.3-2.11.30.20.6
Locomotion distance, session 20.71.02.0-1.30.40.51.4
Locomotion velocity, session 30.80.92.20.1-0.71.50.9
Locomotion distance, session 30.00.00.00.1-0.20.10.1
Stereotopy head waving bouts, day 31.21.42.40.6-1.21.61.1
Stereotopy head waving duration, day 31.11.32.00.9-1.31.40.8
Locomotion velocity, session 72.22.44.60.4-1.42.21.7
Locomotion distance, session 70.40.51.3-0.1-0.50.81.1
Stereotopy head waving bouts, day 70.50.61.00.5-0.91.00.6
Stereotopy head waving duration, day 70.50.61.1-1.00.20.60.9
Locomotion velocity, session 81.11.31.8-1.31.3-1.2-0.4
Locomotion distance, session 80.71.02.50.4-0.91.60.9
Degree of sensitization distance0.50.51.2-0.1-0.50.61.1
Degree of sensitization stereotypy0.10.10.3-0.60.20.30.3
Conditioned locomotion1.21.42.6-1.41.6-1.0-0.3
Cocaine response after cond. corrected0.60.61.21.1-1.00.40.2
Cocaine response after cond. not corrected0.40.50.90.9-1.00.40.2
Cocaine response before conditioning0.30.30.7-0.90.7-0.2-0.2
Saline control response2.33.06.7-2.62.1-1.00.3
Bone: connectivity density1.62.55.3-2.10.50.62.3
Bone: cortical apparent density0.20.20.4-0.60.6-0.3-0.3
Bone: cortical area0.40.71.3-0.81.2-0.4-0.7
Bone: cortical porosity0.60.71.4-0.4-0.31.01.2
Bone: cortical porosity0.50.61.0-0.90.30.61.0
Bone: cortical thickness3.25.28.2-2.12.9-2.3-1.7
Bone: cortical thickness1.82.13.6-0.91.5-1.9-1.2
Bone: cortical tissue density0.30.30.5-0.70.7-0.4-0.3
Condit. Reinf. active minus inactive responses0.20.30.4-0.50.10.70.6
Condit. Reinf. active-inactive response ratio0.10.10.1-0.20.00.30.3
Condit. Reinf. active responses0.20.30.8-0.2-0.00.90.5
Condit. Reinf. inactive responses0.30.30.90.2-0.40.90.5
Incentive salience index mean0.50.61.2-0.70.11.10.9
Condit. Reinf. lever presses0.20.20.4-0.50.40.70.1
Condit. Reinf. active minus inactive responses0.30.40.60.5-0.80.70.4
Condit. Reinf. active-inactive response ratio1.11.11.81.1-1.21.40.2
Condit. Reinf. active responses0.30.41.1-0.2-0.50.51.1
Condit. Reinf. inactive responses0.60.71.8-1.00.0-0.21.4
Condit. Reinf. lever presses0.91.22.9-1.71.2-0.60.1
Condit. Reinf. lever reinforcers received0.20.30.8-0.6-0.10.20.9
Conditioned reinforcement - actives0.20.20.40.6-0.2-0.5-0.6
Conditioned reinforcement - inactives3.33.79.53.1-2.30.2-0.5
Conditioned locomotion4.04.812.53.5-2.30.1-1.0
Patch foraging indifference point 0 sec0.00.10.10.2-0.40.10.2
Patch foraging indifference point AUC2.02.34.3-2.11.9-1.1-0.4
Delay disc. indifference point, 0s delay1.31.52.30.3-1.31.41.5
Delay disc. indifference point, 16s delay1.41.42.01.0-1.41.40.9
Delay disc. indifference point, 2s delay0.20.20.40.2-0.60.70.3
Delay disc. indifference point, 24s delay0.00.00.20.1-0.0-0.4-0.0
Delay disc. indifference point, 4s delay0.50.51.30.0-0.70.41.1
Delay disc. indifference point, 8s delay0.30.41.1-0.1-0.50.11.1
Indifference point function ln k4.15.712.13.5-2.91.5-0.0
Indifference point function log k4.15.712.13.5-2.91.5-0.0
Patch foraging total patch changes 0 sec0.00.10.20.1-0.0-0.4-0.2
Patch foraging total patch changes 12 sec2.43.17.3-2.72.0-0.90.3
Patch foraging total patch changes 18 sec0.30.40.9-1.00.4-0.10.6
Patch foraging total patch changes 24 sec2.02.53.7-1.91.9-1.5-0.4
Patch foraging total patch changes 6 sec0.60.92.3-1.50.9-0.50.7
Patch foraging time to switch 0 sec1.32.03.4-1.70.41.21.9
Patch foraging water rate 0 sec2.23.68.02.8-1.2-0.8-2.1
Patch foraging water rate 12 sec3.35.013.43.7-2.0-0.5-1.6
Patch foraging water rate 18 sec1.21.74.52.1-1.4-0.1-0.5
Patch foraging water rate 24 sec1.92.66.92.6-1.3-0.2-1.3
Patch foraging water rate 6 sec1.52.25.52.3-1.0-0.7-1.3
Seeking ratio, delayed vs. immediate footshock0.40.51.00.0-0.60.81.0
Distance traveled before self-admin0.20.20.4-0.70.50.3-0.1
Distance traveled after self-admin0.10.10.1-0.30.40.1-0.1
Extensor digitorum longus weight3.714.733.2-5.84.8-1.60.1
Bone: elastic displacement1.01.12.11.10.1-1.5-1.1
Bone: elastic work1.41.83.1-1.01.6-1.8-0.8
Bone: endosteal estimation2.04.47.81.3-2.12.81.9
Bone: endosteal perimeter2.45.08.41.5-2.42.91.9
Epididymis fat weight1.94.37.52.6-2.71.50.8
Delta time in closed arm before/after self-admin0.30.30.8-0.40.4-0.90.2
Delta time in open arm before/after self-admin0.10.10.50.10.2-0.2-0.7
Diff in mean of infusions in LGA sessions0.70.81.5-0.50.9-1.2-0.7
Delay discount exponential model param0.50.51.30.10.7-0.6-1.1
Extinction: sum of active levers before priming2.02.05.2-2.31.50.30.7
Active lever presses in extinction session 62.32.23.7-1.31.9-1.3-1.3
Bone: final force1.22.04.7-2.21.7-0.20.3
Bone: final moment1.11.74.2-2.01.6-0.20.3
Food consumed during 24 hour testing period0.50.61.30.10.5-0.9-1.1
Glucose2.74.05.81.6-2.42.31.7
Heart weight2.02.85.02.1-2.20.90.9
Delay discount hyperbolic model param0.40.51.10.10.6-0.6-1.0
Intermittent access intake day 1-15 change0.80.81.31.1-0.1-0.7-1.2
Intermittent access intake escalation0.40.41.01.0-0.3-0.4-0.7
Intermittent access intake escalation 20.60.61.50.70.2-0.7-1.2
Intermitt. access day 1 inactive lever presses1.51.63.41.9-1.50.60.1
Intermitt. access day 15 inactive lever presses1.31.43.81.9-1.40.1-0.1
Intermitt. access escalation Index3.32.94.81.5-2.21.51.4
Intermittent access day 1 total infusions5.86.711.82.3-3.42.02.3
Intermittent access day 15 total infusions4.85.310.43.2-3.10.90.7
Intermittent access terminal intake (last 3 days)3.74.17.62.6-2.71.00.9
Intermittent access total infusions3.94.48.22.2-2.91.31.6
Intermittent access day 1 locomotion4.54.78.01.7-2.81.72.3
Intermittent access day 15 total locomotion3.13.46.22.5-2.50.90.7
Intermittent access total locomotion6.06.912.32.6-3.52.12.0
Intermittent access standard deviation0.60.71.81.3-0.7-0.5-0.5
Left kidney weight0.51.52.81.7-1.11.3-0.4
Right kidney weight0.30.82.01.0-0.10.1-1.4
Cocaine induced anxiety0.10.10.30.20.2-0.2-0.6
Post-drug Anxiety1.31.42.4-0.91.6-0.8-1.3
Baseline Anxiety1.81.93.5-1.61.9-0.9-0.7
Tail length1.44.36.2-1.22.3-2.5-2.0
Length with tail2.28.012.2-2.73.5-3.1-1.7
Length without tail1.84.06.3-2.42.5-2.0-0.6
Times rat made contact with spout0.40.41.0-1.00.4-0.00.8
Lifetime Intake3.74.27.72.0-2.81.31.8
Liver weight, left0.20.30.90.3-0.21.0-0.2
Liver weight, right0.00.00.00.1-0.10.00.1
Locomotor activity0.71.12.51.6-0.6-0.9-0.9
Locomotor testing distance0.81.33.21.8-0.8-0.9-0.8
Locomotor testing rearing0.81.22.61.6-1.2-0.80.3
Locomotion in novel chamber2.63.27.52.7-2.20.7-0.4
Locomotion in novel chamber post-restriction1.51.84.02.0-1.70.6-0.1
Fecal boli incidents, locomotor time 10.10.10.30.20.00.1-0.5
Change in fecal boli incidents, locomotor task0.30.30.8-0.3-0.20.30.9
Time >=10cm from walls, locomotor time 12.02.02.90.9-1.71.51.4
Bouts of movement, locomotor time 10.70.81.4-1.11.2-0.8-0.3
Total resting periods, locomotor time 10.40.50.8-0.90.9-0.5-0.2
Rest time, locomotor task time 10.70.81.91.4-0.7-0.1-0.8
Distance moved, locomotor task time 10.50.61.3-0.5-0.30.71.2
Vertical activity count, locomotor time 10.60.61.51.2-1.00.10.0
Time >=10cm from walls, locomotor time 20.10.10.30.0-0.20.60.1
Bouts of movement, locomotor time 20.20.20.5-0.70.6-0.20.2
Total resting periods, locomotor time 20.10.10.2-0.50.30.10.4
Rest time, locomotor task time 21.41.63.11.8-1.60.70.2
Distance moved, locomotor task time 20.70.81.5-1.21.2-0.5-0.3
Vertical activity count, locomotor time 21.11.21.90.10.9-1.4-1.4
Light reinforcement 10.00.10.10.4-0.2-0.3-0.2
Light reinforcement 20.71.02.01.4-0.90.5-0.9
Bone: marrow area2.14.68.41.3-2.22.91.9
Bone: maximum diameter0.10.10.3-0.10.40.2-0.5
Bone: maximum force1.42.55.8-2.41.30.81.3
Bone: maximum moment1.32.25.0-2.21.20.81.3
Mean time between licks in bursts0.50.81.5-1.21.1-0.7-0.1
Mean num. licks in bursts0.20.20.40.3-0.50.10.6
Cd content in liver0.80.92.41.6-0.8-0.4-0.7
Co content in liver0.70.91.51.2-0.3-0.9-1.1
Cu content in liver0.20.20.4-0.60.30.60.2
Fe content in liver0.20.20.3-0.30.5-0.5-0.6
K content in liver1.21.22.2-1.50.50.81.4
Mg content in liver2.32.35.1-0.6-0.91.82.3
Mn content in liver1.31.52.8-1.71.5-1.0-0.0
Na content in liver1.01.11.6-1.01.3-0.5-1.2
Rb content in liver1.92.33.51.2-1.91.41.6
Se content in liver0.20.20.60.2-0.40.20.8
Sr content in liver3.33.14.3-1.62.1-1.7-1.6
Zn content in liver0.50.51.3-1.10.80.10.4
Bone: minimum diameter2.75.19.01.0-2.13.02.4
Time in familiar zone, hab. session 10.50.40.70.4-0.70.80.6
Time in novel zone, hab. session 10.40.41.00.30.1-1.0-0.7
Total zone transitions, hab. session 10.30.41.1-1.00.70.20.3
Total locomotion distance, hab. session 10.71.02.20.7-1.01.50.6
Locomotion velocity, hab. session 10.40.51.50.2-0.51.20.6
Time in familiar zone, hab. session 20.50.51.5-0.10.5-1.2-0.4
Time in novel zone, hab. session 20.50.51.2-0.2-0.41.10.8
Total zone transitions, hab. session 22.32.96.9-1.7-0.11.42.6
Total locomotion distance, hab. session 21.62.13.8-0.2-1.02.01.9
Locomotion velocity, hab. session 21.72.34.50.1-1.22.11.8
Novel to familiar place preference ratio0.30.30.8-0.90.50.30.1
Novelty place preference0.10.10.3-0.50.10.40.2
Time in novel zone, NPP test0.10.10.2-0.40.00.30.2
Total zone transitions, NPP test1.11.63.8-2.01.00.51.2
Total locomotion distance, NPP test0.60.82.0-0.3-0.41.41.0
Locomotion velocity, NPP test0.50.72.0-0.3-0.31.40.8
Intraocular pressure1.11.52.41.6-0.4-1.2-1.4
Delta distance traveled before/after self-admin0.10.10.30.20.1-0.6-0.1
Delta ambulatory time before/after self-admin0.10.10.50.00.2-0.7-0.1
Parametrial fat weight3.26.29.22.2-2.83.01.7
Pavlov. Cond. lever latency0.10.10.30.5-0.2-0.4-0.3
Pavlov. Cond. magazine entry latency0.70.91.9-0.4-0.51.41.1
Pavlov. Cond. change in total contacts0.40.41.50.0-0.41.20.2
Pavlov. Cond. index score0.00.10.1-0.20.10.4-0.2
Pavlov. Cond. latency score0.10.10.3-0.2-0.10.60.1
Pavlov. Cond. lever contacts0.00.00.1-0.1-0.10.30.1
Pavlov. Cond. magazine entry number0.10.10.30.3-0.3-0.00.6
Pavlov. Cond. intertrial magazine entries0.30.30.80.9-0.2-0.4-0.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.50.20.5-0.0
Pavlov. Cond. response bias0.00.10.2-0.10.10.1-0.4
Pavlov. Cond. lever latency0.20.20.50.7-0.60.20.1
Pavlov. Cond. magazine entry latency1.71.95.3-2.31.4-0.00.7
Pavlov. Cond. change in total contacts0.60.82.0-1.40.80.50.4
Pavlov. Cond. index score0.91.13.1-1.81.20.10.3
Pavlov. Cond. latency score0.70.92.4-1.51.00.30.3
Pavlov. Cond. lever contacts0.40.60.8-0.70.9-0.9-0.7
Pavlov. Cond. magazine entry number2.83.49.13.0-2.10.2-0.6
Pavlov. Cond. intertrial magazine entries0.60.81.91.4-1.10.3-0.3
Pavlov. Cond. lever-magazine prob. diff.1.11.43.9-2.01.30.00.4
Pavlov. Cond. response bias0.81.12.4-1.61.2-0.6-0.2
Time in closed arm before self-admin0.10.10.4-0.1-0.20.70.1
Time in closed arm after self-admin0.10.10.20.0-0.10.20.4
Time in open arm before self-admin0.10.20.30.4-0.5-0.10.5
Time in open arm after self-admin0.30.30.50.50.0-0.7-0.7
Bone: periosteal estimation0.30.61.80.3-0.51.30.5
Bone: periosteal perimeter0.10.20.6-0.2-0.10.80.6
Bone: post-yield work6.08.217.7-0.7-1.74.23.5
Progressive ratio test 1 active lever presses1.51.63.31.8-1.70.10.3
Progressive ratio test 1 breakpoint1.31.33.01.7-1.5-0.10.1
Progressive ratio test 1 inactive lever presses0.80.81.61.1-1.30.30.6
Progressive ratio test 2 active lever presses2.42.65.22.3-2.20.40.4
Progressive ratio test 2 breakpoint2.63.07.12.7-2.20.1-0.0
Progressive ratio test 2 inactive lever presses5.56.411.63.4-3.41.20.9
Incentive Sensitization - Responses0.30.30.60.7-0.80.20.4
Incentive Sensitization - Breakpoint0.40.40.80.9-0.90.30.3
Sum of active levers in priming session hrs 5-63.02.94.9-0.71.9-1.6-2.2
Progressive ratio2.12.44.2-1.80.11.52.1
Food seeking constrained by brief footshock0.20.30.5-0.60.7-0.6-0.1
Seeking ratio, punishment vs. effort1.21.42.21.5-0.2-1.2-1.4
Retroperitoneal fat weight3.712.320.44.5-4.42.91.0
Reaction time number correct0.81.12.1-0.61.1-1.5-0.9
Reaction time mean minus median1.21.63.6-1.91.6-0.5-0.2
Reaction time mean minus median AUC1.11.52.3-1.41.5-1.0-0.8
Reaction time num false alarms0.10.20.40.40.1-0.3-0.6
Reaction time num false alarms AUC0.20.30.5-0.30.7-0.6-0.6
Reaction time trials correct on left0.81.12.1-0.61.1-1.5-0.9
Reaction time trials on left0.91.32.5-0.71.2-1.6-1.0
Reaction time mean0.00.10.2-0.00.00.1-0.4
Reaction time mean AUC0.10.10.20.0-0.10.4-0.3
Median of all reaction times0.10.20.30.4-0.50.5-0.2
Reaction time omissions0.81.11.7-1.31.3-0.8-0.6
Reaction time false alarm rate0.00.10.10.3-0.10.2-0.3
Reaction time premature initiation rate2.12.84.4-2.12.0-1.5-0.7
Reaction time premature initiations4.05.68.1-2.62.8-2.4-1.3
Std. dev. reaction times0.30.50.8-0.90.8-0.4-0.5
Reaction time trials completed0.91.32.5-0.71.2-1.6-1.0
Reaction time trials AUC0.71.01.9-0.51.0-1.4-0.8
Run reversals in cocaine runway, females1.31.32.6-1.0-0.21.21.6
Run reversals in cocaine runway, males1.81.73.70.70.6-1.5-1.9
Latency to leave start box in cocaine runway0.70.81.50.0-0.71.21.0
Latency to leave start box in cocaine runway, F0.40.41.0-0.1-0.51.00.7
Latency to leave start box in cocaine runway, M0.00.00.10.1-0.10.20.1
Std. dev. time between licks in bursts0.20.20.4-0.00.5-0.6-0.6
Total sessions with >9 infusions1.61.73.11.2-1.81.01.2
Short access day 1 total inactive lever presses2.52.74.92.1-2.21.00.7
Short access day 10 total inactive lever presses1.61.84.32.1-1.70.40.1
Short access day 1 total infusions3.94.26.81.5-2.61.92.0
Short access day 10 total infusions3.94.37.70.8-2.41.82.8
Short access total infusions2.22.53.90.9-2.01.31.9
Short access day 1 locomotion2.72.95.01.4-2.21.21.8
Short access day 10 total locomotion2.42.74.11.1-2.01.31.9
Short access total locomotion2.22.33.50.9-1.91.31.8
One hour access (0.3 mA shock)5.26.113.83.7-3.20.40.4
Compulsive drug intake2.32.34.0-1.82.0-1.3-0.5
One hour access (shock baseline)5.26.013.13.6-3.20.80.2
Social response proportion0.50.51.2-1.10.7-0.40.4
Social responses0.40.51.1-0.60.8-1.1-0.1
Social time0.50.60.9-0.70.9-0.9-0.4
Soleus weight2.47.015.13.9-3.01.9-0.0
Bone: stiffness1.21.94.2-2.10.91.01.3
Tibialis anterior weight7.024.139.9-6.16.3-3.8-2.1
Time to tail flick, vehicle, before self-admin0.30.30.6-0.80.20.30.7
Time to tail flick, vehicle, after self-admin0.91.02.3-1.50.60.21.1
Time to tail flick, test, before self-admin1.81.83.60.4-1.41.21.9
Time to tail flick, test, after self-admin0.10.10.2-0.10.2-0.4-0.3
Delta time to tail flick, vehicle, before/after SA0.30.30.7-0.80.40.00.7
Delta time to tail flick, test, before/after SA3.63.35.1-0.71.9-2.0-2.3
Tibia length0.72.03.7-1.21.9-0.7-1.6
Ambulatory time before self-admin0.10.10.2-0.40.40.2-0.2
Ambulatory time after self-admin0.30.40.70.4-0.60.80.5
Bone: tissue strength0.10.10.2-0.1-0.10.40.4
Total heroin consumption2.83.37.5-2.72.3-0.5-0.1
Bone: trabecular number0.71.13.2-0.8-0.30.61.8
Bone: trabecular spacing0.00.10.10.3-0.10.2-0.3
Bone: trabecular thickness0.91.11.60.7-1.30.91.2
Bone: trabecular tissue density1.92.66.42.5-1.71.0-0.6
Water consumed over 24 hours0.70.91.4-1.10.9-1.2-0.0
Number of responses in last shaping day0.50.51.31.1-0.7-0.5-0.3