Crtc3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL mRNA stability Crtc3 0.03 0.02 7.3e-03 0 0.01 0.01 0 1.9e-01 3.7e-02 2.9e-02 9.6e-02
2 Adipose gene expression Crtc3 0.04 0.03 7.2e-03 -0 0 0 -0 8.5e-01 1.8e-01 8.8e-02 6.8e-01
3 pVTA gene expression Crtc3 0.11 0.06 3.2e-03 0.05 0.04 0.03 0.04 4.5e-03 6.2e-03 1.7e-02 1.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.73.5-1.9-1.20.4
Area under the delay curve0.70.72.10.31.40.3
BMI with tail1.85.711.13.3-1.5-2.0
BMI without tail0.51.02.01.41.00.4
Body weight0.51.93.31.80.1-1.6
Weight adjusted by age0.20.20.5-0.7-0.30.3
Bone surface1.62.86.2-2.5-0.01.5
Bone volume1.42.45.5-2.3-0.41.2
Breakpoint value in progressive ratio session0.30.40.80.90.5-0.1
Number of licking bursts0.70.81.8-1.30.30.8
Context. condit. distance diff. score0.10.20.4-0.6-0.10.4
Locomotion velocity, session 10.60.71.10.71.0-0.6
Locomotion distance, session 10.50.61.80.31.30.1
Locomotion velocity, session 20.30.30.80.50.9-0.2
Locomotion distance, session 20.30.41.0-0.31.00.3
Locomotion velocity, session 32.83.24.8-1.12.21.9
Locomotion distance, session 34.75.18.2-1.62.92.1
Stereotopy head waving bouts, day 30.80.91.9-1.4-0.8-0.4
Stereotopy head waving duration, day 30.30.30.5-0.2-0.70.7
Locomotion velocity, session 71.31.54.20.22.00.4
Locomotion distance, session 70.60.71.2-0.41.10.9
Stereotopy head waving bouts, day 70.91.02.8-1.7-0.20.5
Stereotopy head waving duration, day 70.30.40.6-0.70.40.7
Locomotion velocity, session 80.80.92.61.60.3-0.2
Locomotion distance, session 80.40.61.3-0.51.10.5
Degree of sensitization distance1.11.22.50.8-1.6-0.6
Degree of sensitization stereotypy0.10.10.3-0.50.10.1
Conditioned locomotion0.60.81.2-0.3-1.0-1.1
Cocaine response after cond. corrected0.81.01.60.7-0.8-1.3
Cocaine response after cond. not corrected0.60.71.00.9-0.4-1.0
Cocaine response before conditioning0.60.71.0-0.51.00.9
Saline control response4.05.313.5-0.23.71.5
Bone: connectivity density1.01.63.5-1.9-1.20.1
Bone: cortical apparent density2.33.04.52.1-0.3-2.1
Bone: cortical area1.62.44.9-2.21.20.9
Bone: cortical porosity0.80.82.2-0.2-1.50.5
Bone: cortical porosity0.70.81.8-0.3-1.30.7
Bone: cortical thickness0.30.40.7-0.90.7-0.2
Bone: cortical thickness0.91.01.9-0.1-1.0-1.4
Bone: cortical tissue density2.33.14.62.1-0.4-2.1
Condit. Reinf. active minus inactive responses0.70.81.20.51.1-1.0
Condit. Reinf. active-inactive response ratio1.61.72.5-1.61.31.0
Condit. Reinf. active responses0.70.91.80.90.3-1.3
Condit. Reinf. inactive responses1.01.21.51.2-0.9-1.2
Incentive salience index mean1.92.32.71.41.6-1.5
Condit. Reinf. lever presses3.54.76.82.61.8-1.9
Condit. Reinf. active minus inactive responses0.91.12.11.5-0.5-1.0
Condit. Reinf. active-inactive response ratio1.92.02.31.5-1.4-1.3
Condit. Reinf. active responses0.50.71.11.01.0-0.2
Condit. Reinf. inactive responses3.44.210.8-0.53.31.3
Condit. Reinf. lever presses1.21.72.60.31.61.5
Condit. Reinf. lever reinforcers received0.71.02.00.91.4-0.2
Conditioned reinforcement - actives0.10.10.20.1-0.4-0.3
Conditioned reinforcement - inactives0.70.82.2-1.50.20.5
Conditioned locomotion0.20.20.50.1-0.7-0.2
Patch foraging indifference point 0 sec0.71.21.6-0.91.31.1
Patch foraging indifference point AUC1.41.62.8-1.7-0.21.4
Delay disc. indifference point, 0s delay0.20.20.50.2-0.1-0.7
Delay disc. indifference point, 16s delay0.70.71.1-0.61.10.7
Delay disc. indifference point, 2s delay0.50.50.8-0.10.90.9
Delay disc. indifference point, 24s delay0.20.20.4-0.40.60.2
Delay disc. indifference point, 4s delay2.32.57.00.52.60.4
Delay disc. indifference point, 8s delay0.50.50.70.90.8-0.2
Indifference point function ln k0.20.30.70.90.0-0.3
Indifference point function log k0.20.30.70.90.0-0.3
Patch foraging total patch changes 0 sec1.01.62.2-1.21.11.5
Patch foraging total patch changes 12 sec2.33.07.3-2.7-0.01.3
Patch foraging total patch changes 18 sec2.43.16.4-2.50.71.5
Patch foraging total patch changes 24 sec1.82.22.7-1.61.11.6
Patch foraging total patch changes 6 sec1.01.51.8-1.21.21.3
Patch foraging time to switch 0 sec0.71.02.0-1.40.70.7
Patch foraging water rate 0 sec1.01.52.21.5-1.3-0.8
Patch foraging water rate 12 sec4.36.616.04.00.5-1.9
Patch foraging water rate 18 sec1.72.36.02.5-0.4-0.9
Patch foraging water rate 24 sec2.13.04.62.2-1.1-1.7
Patch foraging water rate 6 sec2.63.87.42.7-0.2-2.0
Seeking ratio, delayed vs. immediate footshock2.93.38.50.9-0.8-2.9
Distance traveled before self-admin1.01.12.70.61.6-0.3
Distance traveled after self-admin2.22.55.7-1.12.40.7
Extensor digitorum longus weight0.20.61.71.30.2-0.3
Bone: elastic displacement3.94.48.71.9-0.8-3.0
Bone: elastic work0.71.02.30.70.4-1.5
Bone: endosteal estimation3.06.613.2-3.6-0.32.6
Bone: endosteal perimeter1.63.37.0-2.6-0.71.6
Epididymis fat weight2.55.89.43.1-0.4-2.8
Delta time in closed arm before/after self-admin1.71.74.50.7-2.1-0.2
Delta time in open arm before/after self-admin0.30.30.70.80.4-0.4
Diff in mean of infusions in LGA sessions2.52.74.7-1.32.21.4
Delay discount exponential model param0.91.02.7-0.3-1.7-0.3
Extinction: sum of active levers before priming1.11.11.71.3-0.8-1.0
Active lever presses in extinction session 61.61.62.71.6-0.1-1.5
Bone: final force0.71.22.7-1.60.30.9
Bone: final moment0.61.02.4-1.50.20.7
Food consumed during 24 hour testing period1.21.42.3-1.40.21.5
Glucose0.20.30.40.6-0.6-0.4
Heart weight0.70.91.61.3-0.5-0.9
Delay discount hyperbolic model param1.11.23.3-0.2-1.8-0.5
Intermittent access intake day 1-15 change0.40.40.6-0.50.80.5
Intermittent access intake escalation0.10.10.2-0.40.20.3
Intermittent access intake escalation 20.70.71.4-1.20.50.7
Intermitt. access day 1 inactive lever presses1.51.62.71.60.4-1.4
Intermitt. access day 15 inactive lever presses0.10.10.3-0.1-0.1-0.5
Intermitt. access escalation Index0.30.30.80.10.9-0.0
Intermittent access day 1 total infusions0.00.00.1-0.2-0.0-0.3
Intermittent access day 15 total infusions0.10.10.20.00.2-0.4
Intermittent access terminal intake (last 3 days)0.20.20.3-0.50.6-0.1
Intermittent access total infusions0.10.10.3-0.00.2-0.5
Intermittent access day 1 locomotion0.20.20.40.00.4-0.6
Intermittent access day 15 total locomotion0.40.40.80.30.5-0.9
Intermittent access total locomotion0.20.20.6-0.8-0.1-0.1
Intermittent access standard deviation2.32.44.8-2.20.51.5
Left kidney weight1.02.75.80.7-2.4-1.3
Right kidney weight0.30.71.30.7-1.1-0.6
Cocaine induced anxiety0.20.20.4-0.4-0.40.6
Post-drug Anxiety0.10.10.10.3-0.4-0.1
Baseline Anxiety2.12.33.51.70.5-1.9
Tail length1.44.27.6-1.82.81.3
Length with tail0.41.32.9-1.01.7-0.2
Length without tail0.41.02.30.5-0.6-1.5
Times rat made contact with spout1.41.62.81.7-0.7-1.2
Lifetime Intake0.10.10.40.20.1-0.6
Liver weight, left2.13.34.11.7-2.0-1.7
Liver weight, right0.71.12.50.9-0.2-1.6
Locomotor activity0.40.71.60.2-0.51.3
Locomotor testing distance0.50.82.11.5-0.60.2
Locomotor testing rearing0.50.82.00.21.40.5
Locomotion in novel chamber0.30.41.0-0.11.00.5
Locomotion in novel chamber post-restriction0.40.50.8-0.4-0.90.8
Fecal boli incidents, locomotor time 11.21.32.4-0.2-1.5-1.2
Change in fecal boli incidents, locomotor task0.20.20.5-0.10.40.7
Time >=10cm from walls, locomotor time 11.31.32.71.70.3-1.1
Bouts of movement, locomotor time 10.10.10.10.10.4-0.2
Total resting periods, locomotor time 10.10.10.10.10.4-0.3
Rest time, locomotor task time 10.70.71.3-1.20.90.1
Distance moved, locomotor task time 10.50.61.11.0-0.8-0.1
Vertical activity count, locomotor time 10.20.20.5-0.1-0.50.7
Time >=10cm from walls, locomotor time 20.50.51.40.11.20.3
Bouts of movement, locomotor time 22.83.06.1-2.5-0.71.6
Total resting periods, locomotor time 23.33.57.4-2.7-1.01.5
Rest time, locomotor task time 20.91.11.4-1.1-1.2-0.7
Distance moved, locomotor task time 20.60.71.5-0.11.20.8
Vertical activity count, locomotor time 20.40.41.0-0.20.31.0
Light reinforcement 13.15.714.7-3.8-0.11.5
Light reinforcement 21.11.54.0-2.0-0.50.3
Bone: marrow area3.16.813.4-3.7-0.32.6
Bone: maximum diameter2.95.310.0-3.20.92.3
Bone: maximum force0.81.43.1-1.70.11.0
Bone: maximum moment0.61.02.4-1.6-0.00.8
Mean time between licks in bursts1.21.72.7-1.3-1.6-0.8
Mean num. licks in bursts3.44.07.02.7-1.2-1.9
Cd content in liver1.92.04.4-0.4-2.1-1.2
Co content in liver0.70.91.20.5-1.1-1.1
Cu content in liver0.40.51.00.71.0-0.0
Fe content in liver0.40.50.8-0.90.50.6
K content in liver3.23.24.1-1.51.82.0
Mg content in liver2.92.94.9-1.41.42.2
Mn content in liver0.40.41.10.4-0.1-1.0
Na content in liver5.05.37.7-2.11.92.8
Rb content in liver0.30.40.50.30.70.7
Se content in liver0.10.10.3-0.5-0.0-0.1
Sr content in liver0.30.30.8-0.10.20.9
Zn content in liver1.71.92.9-1.50.51.7
Bone: minimum diameter2.75.012.1-3.5-0.81.5
Time in familiar zone, hab. session 10.20.20.50.0-0.00.7
Time in novel zone, hab. session 10.30.30.80.20.2-0.9
Total zone transitions, hab. session 13.44.813.80.33.70.7
Total locomotion distance, hab. session 11.01.41.8-1.01.2-1.4
Locomotion velocity, hab. session 10.91.32.1-0.81.1-1.4
Time in familiar zone, hab. session 20.60.61.3-1.1-0.50.6
Time in novel zone, hab. session 20.30.30.50.70.5-0.4
Total zone transitions, hab. session 22.83.69.30.13.11.3
Total locomotion distance, hab. session 20.81.12.4-1.50.8-0.6
Locomotion velocity, hab. session 20.71.01.7-1.30.8-0.7
Novel to familiar place preference ratio0.70.71.3-1.1-0.11.0
Novelty place preference0.50.50.8-0.9-0.40.8
Time in novel zone, NPP test0.30.30.5-0.6-0.40.7
Total zone transitions, NPP test0.81.23.00.71.7-0.1
Total locomotion distance, NPP test1.31.74.2-0.9-0.4-2.0
Locomotion velocity, NPP test1.21.83.5-1.2-0.5-1.9
Intraocular pressure0.10.10.10.4-0.3-0.0
Delta distance traveled before/after self-admin2.93.15.2-2.30.61.9
Delta ambulatory time before/after self-admin1.31.42.8-1.70.11.2
Parametrial fat weight3.26.211.03.30.1-2.7
Pavlov. Cond. lever latency1.92.43.5-1.5-1.91.3
Pavlov. Cond. magazine entry latency2.02.63.31.11.8-1.8
Pavlov. Cond. change in total contacts2.32.55.00.61.5-2.2
Pavlov. Cond. index score2.43.13.71.61.9-1.8
Pavlov. Cond. latency score2.53.24.51.62.1-1.6
Pavlov. Cond. lever contacts1.61.83.01.11.7-1.1
Pavlov. Cond. magazine entry number2.43.03.4-1.6-1.81.7
Pavlov. Cond. intertrial magazine entries0.10.10.20.20.30.4
Pavlov. Cond. lever-magazine prob. diff.2.73.44.21.71.7-2.0
Pavlov. Cond. response bias1.31.63.10.91.0-1.8
Pavlov. Cond. lever latency1.92.66.6-1.1-2.6-0.3
Pavlov. Cond. magazine entry latency2.32.64.72.21.5-0.9
Pavlov. Cond. change in total contacts2.53.48.01.52.8-0.3
Pavlov. Cond. index score2.83.67.51.82.7-0.2
Pavlov. Cond. latency score2.63.27.11.62.7-0.1
Pavlov. Cond. lever contacts2.83.810.01.03.20.6
Pavlov. Cond. magazine entry number1.61.93.7-1.9-1.40.3
Pavlov. Cond. intertrial magazine entries0.50.60.9-0.90.70.7
Pavlov. Cond. lever-magazine prob. diff.2.63.37.21.72.7-0.2
Pavlov. Cond. response bias2.93.99.91.43.10.1
Time in closed arm before self-admin1.31.52.3-1.41.50.3
Time in closed arm after self-admin0.20.20.5-0.7-0.40.2
Time in open arm before self-admin0.91.01.90.9-1.4-0.5
Time in open arm after self-admin1.82.04.62.1-0.6-1.0
Bone: periosteal estimation3.06.213.2-3.60.62.2
Bone: periosteal perimeter1.42.35.3-2.30.41.2
Bone: post-yield work2.12.84.4-1.90.72.1
Progressive ratio test 1 active lever presses0.10.10.4-0.2-0.6-0.0
Progressive ratio test 1 breakpoint0.10.10.1-0.3-0.40.1
Progressive ratio test 1 inactive lever presses2.12.33.01.41.3-1.7
Progressive ratio test 2 active lever presses0.20.30.8-0.90.10.0
Progressive ratio test 2 breakpoint0.40.41.2-1.10.40.2
Progressive ratio test 2 inactive lever presses0.20.20.5-0.10.5-0.7
Incentive Sensitization - Responses0.80.81.2-1.01.10.1
Incentive Sensitization - Breakpoint0.80.81.2-1.01.10.1
Sum of active levers in priming session hrs 5-60.50.51.00.0-1.0-0.6
Progressive ratio0.20.20.5-0.20.7-0.1
Food seeking constrained by brief footshock0.40.51.60.11.3-0.1
Seeking ratio, punishment vs. effort0.00.00.00.2-0.10.0
Retroperitoneal fat weight5.217.132.65.7-0.1-4.3
Reaction time number correct0.50.82.3-0.1-1.5-0.2
Reaction time mean minus median1.01.32.4-0.51.51.1
Reaction time mean minus median AUC0.30.30.50.20.70.7
Reaction time num false alarms2.43.27.0-2.7-1.60.5
Reaction time num false alarms AUC2.73.77.3-2.7-1.70.9
Reaction time trials correct on left0.50.82.3-0.1-1.5-0.2
Reaction time trials on left0.60.82.3-0.1-1.5-0.2
Reaction time mean0.30.41.00.51.0-0.1
Reaction time mean AUC0.50.61.10.81.0-0.3
Median of all reaction times0.20.30.50.60.7-0.5
Reaction time omissions0.10.10.3-0.6-0.10.3
Reaction time false alarm rate1.01.53.3-1.8-0.90.6
Reaction time premature initiation rate1.21.64.6-0.12.10.5
Reaction time premature initiations0.20.30.80.00.90.2
Std. dev. reaction times1.11.63.70.11.91.0
Reaction time trials completed0.60.82.3-0.1-1.5-0.2
Reaction time trials AUC0.71.02.8-0.0-1.7-0.4
Run reversals in cocaine runway, females1.11.01.5-1.11.20.7
Run reversals in cocaine runway, males3.03.05.72.4-0.4-1.7
Latency to leave start box in cocaine runway4.75.19.8-3.11.41.9
Latency to leave start box in cocaine runway, F3.84.19.0-3.00.81.6
Latency to leave start box in cocaine runway, M1.21.11.6-1.30.71.1
Std. dev. time between licks in bursts2.53.05.6-2.40.11.8
Total sessions with >9 infusions0.00.00.1-0.3-0.1-0.2
Short access day 1 total inactive lever presses0.80.91.71.00.4-1.3
Short access day 10 total inactive lever presses1.51.62.71.60.5-1.4
Short access day 1 total infusions0.00.00.00.10.0-0.0
Short access day 10 total infusions0.10.20.5-0.10.7-0.1
Short access total infusions0.10.10.3-0.20.5-0.1
Short access day 1 locomotion0.60.61.0-1.00.90.1
Short access day 10 total locomotion1.21.32.4-1.60.01.3
Short access total locomotion1.71.84.0-2.00.21.2
One hour access (0.3 mA shock)0.10.10.2-0.2-0.3-0.5
Compulsive drug intake0.70.70.90.9-0.5-0.9
One hour access (shock baseline)0.20.30.6-0.80.30.4
Social response proportion1.11.11.81.4-1.2-0.4
Social responses1.01.22.3-0.3-1.51.1
Social time3.04.06.8-2.1-0.82.6
Soleus weight1.13.44.92.21.5-1.7
Bone: stiffness0.61.02.2-1.5-0.10.8
Tibialis anterior weight0.51.73.61.90.7-0.9
Time to tail flick, vehicle, before self-admin0.80.81.70.9-0.0-1.3
Time to tail flick, vehicle, after self-admin3.23.44.1-1.91.52.0
Time to tail flick, test, before self-admin4.44.36.2-2.50.82.5
Time to tail flick, test, after self-admin0.20.20.30.0-0.5-0.5
Delta time to tail flick, vehicle, before/after SA6.26.110.2-2.41.53.2
Delta time to tail flick, test, before/after SA2.22.02.71.1-1.4-1.6
Tibia length2.36.411.2-2.80.43.4
Ambulatory time before self-admin2.32.33.51.91.4-1.2
Ambulatory time after self-admin1.61.85.2-0.12.30.2
Bone: tissue strength0.60.61.70.30.11.3
Total heroin consumption0.30.40.80.9-0.3-0.4
Bone: trabecular number2.43.86.9-2.6-1.91.0
Bone: trabecular spacing0.91.12.31.51.0-0.3
Bone: trabecular thickness0.30.30.9-1.0-0.1-0.2
Bone: trabecular tissue density0.81.11.6-0.71.31.1
Water consumed over 24 hours0.60.71.41.2-0.6-0.6
Number of responses in last shaping day0.30.40.5-0.7-0.70.3