Coq10a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC intron excision ratio chr7_792811_793041 0.17 0.12 5.0e-03 0.1 0.05 0.06 0.07 2.0e-03 2.1e-02 1.6e-02 8.0e-03
2 OFC intron excision ratio chr7_793142_793569 0.19 0.14 3.2e-03 0.1 0.07 0.07 0.09 2.1e-03 9.6e-03 1.1e-02 4.2e-03
3 Adipose gene expression Coq10a 0.03 0.03 1.9e-03 0.02 0.01 0.01 0.01 4.6e-03 1.5e-02 1.0e-02 1.4e-02
4 Liver mRNA stability Coq10a 0.07 0.05 7.7e-08 0.04 0.06 0.06 0.05 8.8e-06 7.6e-07 5.9e-07 1.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.81.01.0-1.0-1.00.4
Area under the delay curve0.00.00.00.2-0.2-0.10.1
BMI with tail7.725.126.9-5.05.04.9-5.2
BMI without tail1.73.63.6-1.91.91.9-1.9
Body weight1.25.15.2-2.22.22.3-2.2
Weight adjusted by age0.10.10.1-0.40.40.3-0.2
Bone surface1.52.73.31.8-1.8-1.80.9
Bone volume1.22.02.61.6-1.6-1.60.7
Breakpoint value in progressive ratio session1.61.81.91.3-1.3-1.31.4
Number of licking bursts4.35.15.3-2.22.22.3-2.3
Context. condit. distance diff. score0.20.30.3-0.50.50.6-0.6
Locomotion velocity, session 10.10.10.20.4-0.4-0.40.1
Locomotion distance, session 10.70.91.21.1-1.1-1.00.6
Locomotion velocity, session 22.42.83.21.8-1.8-1.71.4
Locomotion distance, session 24.46.16.82.6-2.6-2.52.2
Locomotion velocity, session 35.05.86.22.4-2.4-2.32.5
Locomotion distance, session 30.10.10.10.3-0.3-0.20.2
Stereotopy head waving bouts, day 36.27.37.42.7-2.7-2.72.6
Stereotopy head waving duration, day 33.74.54.52.1-2.1-2.12.1
Locomotion velocity, session 70.20.20.20.4-0.4-0.40.4
Locomotion distance, session 70.20.30.4-0.60.60.6-0.4
Stereotopy head waving bouts, day 71.71.92.11.4-1.4-1.41.2
Stereotopy head waving duration, day 71.61.92.11.5-1.5-1.41.2
Locomotion velocity, session 82.93.43.92.0-2.0-1.81.6
Locomotion distance, session 80.60.81.01.0-1.0-0.90.7
Degree of sensitization distance0.60.60.6-0.80.80.7-0.8
Degree of sensitization stereotypy0.00.00.00.2-0.2-0.2-0.0
Conditioned locomotion1.82.12.5-1.61.61.4-1.2
Cocaine response after cond. corrected3.84.24.7-2.22.22.1-1.8
Cocaine response after cond. not corrected3.94.34.8-2.22.22.1-1.8
Cocaine response before conditioning0.81.01.11.0-1.0-0.90.9
Saline control response0.50.60.7-0.80.80.8-0.7
Bone: connectivity density0.30.50.60.8-0.8-0.80.3
Bone: cortical apparent density1.72.22.3-1.51.51.5-1.5
Bone: cortical area0.30.40.9-0.50.50.5-0.9
Bone: cortical porosity0.10.10.20.4-0.4-0.30.1
Bone: cortical porosity0.00.00.10.2-0.2-0.1-0.3
Bone: cortical thickness1.01.72.5-1.21.21.2-1.6
Bone: cortical thickness1.01.11.3-1.01.01.2-1.1
Bone: cortical tissue density1.31.71.7-1.31.31.3-1.3
Condit. Reinf. active minus inactive responses2.22.42.61.6-1.6-1.41.6
Condit. Reinf. active-inactive response ratio0.10.10.20.4-0.4-0.20.5
Condit. Reinf. active responses3.64.44.92.2-2.2-2.11.9
Condit. Reinf. inactive responses2.32.73.01.7-1.7-1.71.3
Incentive salience index mean2.02.42.71.6-1.6-1.51.4
Condit. Reinf. lever presses1.11.51.91.4-1.4-1.20.9
Condit. Reinf. active minus inactive responses1.11.31.81.1-1.1-1.11.3
Condit. Reinf. active-inactive response ratio0.00.10.2-0.10.1-0.10.4
Condit. Reinf. active responses1.11.51.61.2-1.2-1.21.3
Condit. Reinf. inactive responses0.60.70.80.9-0.9-0.80.7
Condit. Reinf. lever presses1.92.53.21.5-1.5-1.51.8
Condit. Reinf. lever reinforcers received0.71.01.11.0-1.0-1.01.0
Conditioned reinforcement - actives0.00.00.10.2-0.2-0.30.1
Conditioned reinforcement - inactives2.22.52.7-1.61.61.7-1.4
Conditioned locomotion2.22.72.71.7-1.7-1.61.6
Patch foraging indifference point 0 sec3.25.16.3-2.12.12.3-2.5
Patch foraging indifference point AUC0.60.60.70.8-0.8-0.80.8
Delay disc. indifference point, 0s delay0.20.20.6-0.30.30.4-0.8
Delay disc. indifference point, 16s delay0.30.30.30.5-0.5-0.60.6
Delay disc. indifference point, 2s delay0.00.00.1-0.00.00.1-0.2
Delay disc. indifference point, 24s delay0.10.10.1-0.30.30.3-0.4
Delay disc. indifference point, 4s delay0.80.91.01.0-1.0-1.00.8
Delay disc. indifference point, 8s delay0.20.20.2-0.40.40.5-0.3
Indifference point function ln k0.20.30.3-0.60.60.6-0.5
Indifference point function log k0.20.30.3-0.60.60.6-0.5
Patch foraging total patch changes 0 sec3.15.06.2-2.12.12.3-2.5
Patch foraging total patch changes 12 sec2.33.03.2-1.71.71.7-1.8
Patch foraging total patch changes 18 sec0.00.00.0-0.20.20.1-0.2
Patch foraging total patch changes 24 sec0.30.30.6-0.50.50.6-0.8
Patch foraging total patch changes 6 sec1.92.83.4-1.61.61.6-1.8
Patch foraging time to switch 0 sec0.00.10.1-0.30.30.2-0.3
Patch foraging water rate 0 sec0.91.41.6-1.11.11.3-1.2
Patch foraging water rate 12 sec1.32.02.2-1.51.51.5-1.3
Patch foraging water rate 18 sec0.40.50.7-0.70.70.9-0.3
Patch foraging water rate 24 sec3.04.24.6-2.22.22.1-1.7
Patch foraging water rate 6 sec0.00.00.20.0-0.00.00.4
Seeking ratio, delayed vs. immediate footshock1.61.81.91.4-1.4-1.41.3
Distance traveled before self-admin1.21.31.41.2-1.2-1.21.0
Distance traveled after self-admin0.30.30.40.6-0.6-0.60.3
Extensor digitorum longus weight6.625.926.7-5.25.25.1-4.9
Bone: elastic displacement0.00.00.00.0-0.0-0.10.0
Bone: elastic work0.30.40.5-0.60.60.5-0.7
Bone: endosteal estimation0.40.81.0-0.90.90.8-1.0
Bone: endosteal perimeter0.40.81.10.9-0.9-1.00.6
Epididymis fat weight0.00.10.10.3-0.3-0.30.4
Delta time in closed arm before/after self-admin2.62.52.8-1.71.71.7-1.3
Delta time in open arm before/after self-admin0.60.60.7-0.70.70.8-0.8
Diff in mean of infusions in LGA sessions1.82.02.01.4-1.4-1.41.4
Delay discount exponential model param0.00.00.0-0.20.20.2-0.1
Extinction: sum of active levers before priming1.81.82.71.3-1.3-1.21.6
Active lever presses in extinction session 61.61.61.71.3-1.3-1.31.1
Bone: final force1.42.33.5-1.41.41.4-1.9
Bone: final moment1.32.23.3-1.31.31.4-1.8
Food consumed during 24 hour testing period0.40.50.6-0.70.70.7-0.8
Glucose1.72.63.0-1.51.51.6-1.7
Heart weight0.20.20.3-0.50.50.5-0.3
Delay discount hyperbolic model param0.00.00.0-0.10.10.00.1
Intermittent access intake day 1-15 change0.10.10.10.2-0.2-0.20.3
Intermittent access intake escalation0.10.10.2-0.30.30.4-0.0
Intermittent access intake escalation 20.10.10.20.1-0.1-0.10.4
Intermitt. access day 1 inactive lever presses0.20.20.3-0.50.50.5-0.2
Intermitt. access day 15 inactive lever presses0.30.30.50.5-0.5-0.40.7
Intermitt. access escalation Index0.40.40.50.7-0.7-0.60.3
Intermittent access day 1 total infusions0.20.30.4-0.50.50.5-0.6
Intermittent access day 15 total infusions0.30.30.4-0.50.50.6-0.5
Intermittent access terminal intake (last 3 days)0.10.10.2-0.30.30.3-0.4
Intermittent access total infusions0.50.50.5-0.70.70.7-0.7
Intermittent access day 1 locomotion0.00.00.0-0.10.10.1-0.1
Intermittent access day 15 total locomotion0.10.10.20.3-0.3-0.30.4
Intermittent access total locomotion0.20.20.30.5-0.5-0.50.5
Intermittent access standard deviation0.00.00.00.0-0.00.00.2
Left kidney weight0.00.00.00.1-0.1-0.2-0.1
Right kidney weight0.30.80.90.8-0.8-0.91.0
Cocaine induced anxiety2.52.93.11.8-1.8-1.81.6
Post-drug Anxiety1.21.41.51.2-1.2-1.20.9
Baseline Anxiety0.10.10.1-0.20.20.2-0.2
Tail length4.212.615.03.4-3.4-3.43.9
Length with tail1.96.87.62.6-2.6-2.52.7
Length without tail0.00.00.0-0.00.00.0-0.2
Times rat made contact with spout1.41.61.7-1.31.31.3-1.2
Lifetime Intake0.80.91.2-0.90.90.9-1.1
Liver weight, left2.13.33.6-1.81.81.9-1.8
Liver weight, right0.91.51.7-1.21.21.2-1.3
Locomotor activity4.97.88.42.9-2.9-2.62.7
Locomotor testing distance1.83.03.21.8-1.8-1.61.7
Locomotor testing rearing0.00.00.00.0-0.00.10.1
Locomotion in novel chamber0.40.40.5-0.70.70.5-0.7
Locomotion in novel chamber post-restriction3.54.24.32.1-2.1-2.02.0
Fecal boli incidents, locomotor time 11.21.41.5-1.21.21.1-1.1
Change in fecal boli incidents, locomotor task1.41.31.51.2-1.2-1.11.1
Time >=10cm from walls, locomotor time 10.20.20.4-0.40.40.3-0.6
Bouts of movement, locomotor time 10.30.30.40.5-0.5-0.60.7
Total resting periods, locomotor time 11.01.11.21.0-1.0-1.11.1
Rest time, locomotor task time 10.60.70.80.8-0.8-0.90.9
Distance moved, locomotor task time 10.20.20.6-0.30.30.4-0.7
Vertical activity count, locomotor time 11.41.51.7-1.21.21.3-1.2
Time >=10cm from walls, locomotor time 21.81.91.9-1.41.41.3-1.4
Bouts of movement, locomotor time 20.70.70.90.9-0.9-0.90.6
Total resting periods, locomotor time 20.70.70.90.9-0.9-0.90.6
Rest time, locomotor task time 20.30.30.30.5-0.5-0.50.5
Distance moved, locomotor task time 20.20.30.3-0.50.50.5-0.5
Vertical activity count, locomotor time 22.32.52.8-1.51.51.7-1.5
Light reinforcement 13.87.07.42.6-2.6-2.62.7
Light reinforcement 21.01.41.51.2-1.2-1.21.1
Bone: marrow area0.30.70.8-0.80.80.8-0.9
Bone: maximum diameter0.61.21.31.1-1.1-1.10.9
Bone: maximum force1.83.14.0-1.71.71.6-2.0
Bone: maximum moment1.72.93.9-1.61.61.6-2.0
Mean time between licks in bursts0.40.60.70.7-0.7-0.70.8
Mean num. licks in bursts1.01.21.51.1-1.1-1.11.2
Cd content in liver0.40.40.5-0.60.60.7-0.7
Co content in liver0.70.81.00.8-0.8-0.81.0
Cu content in liver0.50.61.1-0.60.60.7-1.1
Fe content in liver0.81.01.1-1.01.01.0-0.9
K content in liver0.90.91.00.9-0.9-1.00.9
Mg content in liver0.80.81.10.9-0.9-1.00.7
Mn content in liver1.61.82.31.4-1.4-1.50.9
Na content in liver0.00.00.00.0-0.0-0.1-0.1
Rb content in liver0.20.20.5-0.40.40.3-0.7
Se content in liver0.10.10.10.2-0.2-0.40.2
Sr content in liver0.00.00.0-0.10.10.20.0
Zn content in liver0.60.71.20.7-0.7-0.71.1
Bone: minimum diameter0.00.10.2-0.20.20.2-0.4
Time in familiar zone, hab. session 14.54.24.92.0-2.0-2.02.2
Time in novel zone, hab. session 12.22.12.9-1.41.41.4-1.7
Total zone transitions, hab. session 11.11.51.71.3-1.3-1.30.9
Total locomotion distance, hab. session 13.34.75.42.3-2.3-2.21.8
Locomotion velocity, hab. session 13.24.55.12.3-2.3-2.11.8
Time in familiar zone, hab. session 23.43.54.71.7-1.7-1.82.2
Time in novel zone, hab. session 23.63.65.0-1.81.81.8-2.2
Total zone transitions, hab. session 20.00.10.20.1-0.1-0.0-0.4
Total locomotion distance, hab. session 20.81.11.31.1-1.1-1.10.8
Locomotion velocity, hab. session 21.11.51.71.3-1.3-1.20.9
Novel to familiar place preference ratio1.21.32.4-0.90.91.1-1.5
Novelty place preference0.70.71.5-0.60.60.8-1.2
Time in novel zone, NPP test1.21.22.2-0.90.91.1-1.5
Total zone transitions, NPP test0.00.10.2-0.10.10.1-0.4
Total locomotion distance, NPP test0.10.10.20.4-0.4-0.40.1
Locomotion velocity, NPP test0.30.40.50.7-0.7-0.70.4
Intraocular pressure0.10.10.30.2-0.2-0.10.6
Delta distance traveled before/after self-admin0.00.00.1-0.10.10.1-0.3
Delta ambulatory time before/after self-admin0.00.00.00.0-0.0-0.0-0.2
Parametrial fat weight0.00.00.00.1-0.1-0.10.1
Pavlov. Cond. lever latency0.40.40.6-0.80.80.7-0.4
Pavlov. Cond. magazine entry latency1.31.72.01.3-1.3-1.31.4
Pavlov. Cond. change in total contacts0.10.10.2-0.20.20.4-0.5
Pavlov. Cond. index score0.81.01.21.1-1.1-1.00.9
Pavlov. Cond. latency score1.11.31.61.2-1.2-1.11.0
Pavlov. Cond. lever contacts0.40.50.60.8-0.8-0.70.4
Pavlov. Cond. magazine entry number0.50.70.7-0.80.80.8-0.9
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.00.00.20.0
Pavlov. Cond. lever-magazine prob. diff.1.01.21.41.2-1.2-1.11.0
Pavlov. Cond. response bias0.91.11.11.1-1.1-1.01.0
Pavlov. Cond. lever latency1.62.22.5-1.51.51.5-1.6
Pavlov. Cond. magazine entry latency2.63.03.11.7-1.7-1.71.7
Pavlov. Cond. change in total contacts0.60.80.90.9-0.9-0.91.0
Pavlov. Cond. index score1.92.52.61.6-1.6-1.61.6
Pavlov. Cond. latency score2.43.03.01.7-1.7-1.71.7
Pavlov. Cond. lever contacts1.11.51.71.2-1.2-1.21.3
Pavlov. Cond. magazine entry number2.32.82.9-1.71.71.7-1.6
Pavlov. Cond. intertrial magazine entries1.21.61.8-1.31.31.3-1.0
Pavlov. Cond. lever-magazine prob. diff.2.12.72.71.6-1.6-1.61.6
Pavlov. Cond. response bias1.72.42.71.5-1.5-1.51.6
Time in closed arm before self-admin0.00.00.10.2-0.2-0.2-0.2
Time in closed arm after self-admin0.40.40.4-0.60.60.6-0.6
Time in open arm before self-admin0.00.00.00.2-0.2-0.10.2
Time in open arm after self-admin1.21.31.4-1.11.11.2-1.1
Bone: periosteal estimation0.40.81.3-0.80.80.7-1.1
Bone: periosteal perimeter0.10.20.30.4-0.4-0.50.0
Bone: post-yield work0.30.40.5-0.70.70.7-0.6
Progressive ratio test 1 active lever presses1.51.61.7-1.21.21.3-1.3
Progressive ratio test 1 breakpoint1.51.61.6-1.21.21.3-1.3
Progressive ratio test 1 inactive lever presses0.00.00.0-0.00.00.1-0.1
Progressive ratio test 2 active lever presses0.50.60.6-0.70.70.7-0.8
Progressive ratio test 2 breakpoint0.00.00.1-0.10.10.2-0.3
Progressive ratio test 2 inactive lever presses0.10.10.3-0.30.30.4-0.5
Incentive Sensitization - Responses0.10.10.10.2-0.2-0.30.3
Incentive Sensitization - Breakpoint0.20.20.20.4-0.4-0.40.4
Sum of active levers in priming session hrs 5-60.30.30.40.6-0.6-0.50.4
Progressive ratio1.51.71.9-1.31.31.4-1.3
Food seeking constrained by brief footshock1.82.22.41.6-1.6-1.41.5
Seeking ratio, punishment vs. effort2.63.13.21.8-1.8-1.71.8
Retroperitoneal fat weight2.68.79.3-3.03.03.1-2.8
Reaction time number correct1.52.12.3-1.51.51.5-1.3
Reaction time mean minus median1.92.53.31.5-1.5-1.51.8
Reaction time mean minus median AUC2.93.83.92.0-2.0-2.01.9
Reaction time num false alarms0.60.91.1-0.80.81.0-1.1
Reaction time num false alarms AUC0.91.21.5-1.01.01.2-1.1
Reaction time trials correct on left1.52.12.3-1.51.51.5-1.3
Reaction time trials on left1.42.02.1-1.51.51.4-1.3
Reaction time mean1.62.22.41.4-1.4-1.61.5
Reaction time mean AUC0.81.01.21.0-1.0-1.11.0
Median of all reaction times0.81.11.31.0-1.0-1.11.0
Reaction time omissions0.00.00.00.0-0.0-0.1-0.1
Reaction time false alarm rate0.00.10.1-0.10.10.3-0.4
Reaction time premature initiation rate0.81.11.71.0-1.0-0.91.3
Reaction time premature initiations0.10.10.40.1-0.1-0.00.6
Std. dev. reaction times1.21.61.91.2-1.2-1.31.4
Reaction time trials completed1.42.02.1-1.51.51.4-1.3
Reaction time trials AUC1.72.42.6-1.61.61.6-1.4
Run reversals in cocaine runway, females2.42.32.41.6-1.6-1.61.4
Run reversals in cocaine runway, males3.02.93.11.8-1.8-1.71.6
Latency to leave start box in cocaine runway0.10.20.20.4-0.4-0.50.1
Latency to leave start box in cocaine runway, F0.20.20.30.6-0.6-0.60.0
Latency to leave start box in cocaine runway, M0.10.10.2-0.50.50.3-0.1
Std. dev. time between licks in bursts0.81.01.21.1-1.1-1.00.7
Total sessions with >9 infusions0.00.00.10.0-0.0-0.0-0.4
Short access day 1 total inactive lever presses0.00.00.0-0.10.10.1-0.2
Short access day 10 total inactive lever presses0.30.30.3-0.60.60.5-0.4
Short access day 1 total infusions0.20.20.6-0.30.30.4-0.8
Short access day 10 total infusions0.70.81.0-0.90.90.9-1.0
Short access total infusions0.80.91.6-0.80.80.9-1.3
Short access day 1 locomotion0.10.10.20.4-0.4-0.40.3
Short access day 10 total locomotion0.50.61.00.6-0.6-0.81.0
Short access total locomotion0.20.20.20.4-0.4-0.40.4
One hour access (0.3 mA shock)0.50.60.7-0.80.80.6-0.7
Compulsive drug intake0.20.20.2-0.40.40.3-0.5
One hour access (shock baseline)0.30.40.4-0.70.70.6-0.5
Social response proportion1.41.51.61.2-1.2-1.31.1
Social responses11.114.314.63.7-3.7-3.83.8
Social time1.31.71.9-1.41.41.2-1.1
Soleus weight6.418.718.8-4.34.34.3-4.3
Bone: stiffness3.55.56.7-2.22.22.3-2.6
Tibialis anterior weight1.24.14.4-2.12.12.1-1.8
Time to tail flick, vehicle, before self-admin2.62.63.01.7-1.7-1.71.4
Time to tail flick, vehicle, after self-admin0.00.00.20.1-0.1-0.10.4
Time to tail flick, test, before self-admin1.91.92.01.4-1.4-1.31.3
Time to tail flick, test, after self-admin0.40.40.50.7-0.7-0.70.6
Delta time to tail flick, vehicle, before/after SA1.71.72.0-1.41.41.4-1.1
Delta time to tail flick, test, before/after SA0.00.00.0-0.10.1-0.00.1
Tibia length0.92.63.41.6-1.6-1.51.8
Ambulatory time before self-admin0.30.30.40.6-0.6-0.60.5
Ambulatory time after self-admin0.10.10.10.3-0.3-0.30.0
Bone: tissue strength3.83.74.0-1.91.91.8-2.0
Total heroin consumption3.03.53.61.9-1.9-1.91.8
Bone: trabecular number1.62.52.71.6-1.6-1.71.3
Bone: trabecular spacing1.41.82.1-1.41.41.5-1.0
Bone: trabecular thickness0.80.91.21.1-1.1-1.10.4
Bone: trabecular tissue density7.310.310.6-3.23.23.3-3.2
Water consumed over 24 hours0.30.40.9-0.50.50.5-1.0
Number of responses in last shaping day0.70.70.80.9-0.9-0.80.9