Cgm4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Cgm4 0.77 0.12 0.0e+00 0.45 0.44 0.45 0.46 7.8e-46 1.6e-45 1.0e-46 7.0e-47
2 LHb gene expression Cgm4 0.85 0.4 5.6e-17 0.53 0.55 0.55 0.56 1.1e-14 1.2e-15 1.5e-15 9.3e-16
3 BLA gene expression Cgm4 0.43 0.11 0.0e+00 0.42 0.41 0.39 0.4 4.8e-24 2.8e-23 4.6e-22 8.1e-23
4 NAcc gene expression Cgm4 0.16 0.1 0.0e+00 0.18 0.16 0.16 0.17 5.6e-26 5.5e-24 4.1e-24 9.3e-26

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.20.2-0.2-0.1
Area under the delay curve0.50.80.9-0.9-0.91.00.8
BMI with tail1.03.54.32.12.1-1.7-1.6
BMI without tail0.94.85.72.42.4-2.0-2.0
Body weight2.19.110.43.23.2-2.8-2.8
Weight adjusted by age0.00.10.20.40.4-0.3-0.3
Bone surface0.61.21.21.11.1-1.1-1.1
Bone volume0.30.60.70.80.8-0.8-0.8
Breakpoint value in progressive ratio session2.13.94.4-2.1-2.11.81.8
Number of licking bursts1.44.44.62.12.1-2.1-2.0
Context. condit. distance diff. score0.00.00.00.20.2-0.1-0.1
Locomotion velocity, session 10.20.20.3-0.4-0.40.60.5
Locomotion distance, session 10.00.00.0-0.1-0.10.10.0
Locomotion velocity, session 21.82.22.41.51.6-1.4-1.4
Locomotion distance, session 20.40.60.70.90.9-0.6-0.7
Locomotion velocity, session 30.30.30.40.60.7-0.5-0.6
Locomotion distance, session 30.91.01.0-1.0-1.01.01.0
Stereotopy head waving bouts, day 31.01.21.51.11.1-1.0-1.2
Stereotopy head waving duration, day 30.80.91.30.90.9-0.9-1.2
Locomotion velocity, session 70.70.80.8-0.9-0.90.90.8
Locomotion distance, session 70.00.00.10.20.2-0.2-0.2
Stereotopy head waving bouts, day 70.70.81.10.80.8-0.8-1.1
Stereotopy head waving duration, day 70.60.81.00.80.9-0.7-1.0
Locomotion velocity, session 80.00.00.1-0.1-0.10.20.2
Locomotion distance, session 80.00.00.00.10.20.0-0.2
Degree of sensitization distance0.91.01.11.11.0-0.9-1.0
Degree of sensitization stereotypy0.70.81.10.90.9-0.8-1.0
Conditioned locomotion0.10.20.2-0.5-0.50.30.3
Cocaine response after cond. corrected0.30.40.40.70.7-0.6-0.6
Cocaine response after cond. not corrected0.91.31.41.21.2-1.0-1.1
Cocaine response before conditioning1.92.32.81.71.6-1.4-1.4
Saline control response1.52.12.21.51.5-1.4-1.4
Bone: connectivity density0.00.00.10.20.2-0.3-0.1
Bone: cortical apparent density0.00.10.1-0.3-0.30.20.1
Bone: cortical area1.93.03.31.81.8-1.7-1.7
Bone: cortical porosity0.10.10.2-0.4-0.40.30.4
Bone: cortical porosity0.00.00.00.00.0-0.1-0.0
Bone: cortical thickness0.50.91.01.01.0-0.9-0.9
Bone: cortical thickness0.91.11.31.11.2-1.1-0.9
Bone: cortical tissue density0.10.10.2-0.4-0.40.30.2
Condit. Reinf. active minus inactive responses0.80.91.21.11.1-0.8-0.6
Condit. Reinf. active-inactive response ratio0.80.81.11.11.1-0.8-0.7
Condit. Reinf. active responses0.40.50.80.90.9-0.6-0.4
Condit. Reinf. inactive responses0.10.10.2-0.3-0.30.30.4
Incentive salience index mean0.70.81.11.11.1-0.8-0.6
Condit. Reinf. lever presses0.20.40.40.70.7-0.6-0.4
Condit. Reinf. active minus inactive responses0.00.00.00.10.1-0.1-0.0
Condit. Reinf. active-inactive response ratio0.00.10.10.20.2-0.3-0.3
Condit. Reinf. active responses0.10.10.1-0.3-0.30.30.4
Condit. Reinf. inactive responses0.30.50.6-0.7-0.70.80.8
Condit. Reinf. lever presses0.10.10.20.40.4-0.3-0.3
Condit. Reinf. lever reinforcers received0.10.10.2-0.3-0.30.40.4
Conditioned reinforcement - actives1.24.64.92.22.2-2.2-2.1
Conditioned reinforcement - inactives0.92.53.71.91.9-1.1-1.2
Conditioned locomotion1.72.52.61.61.6-1.6-1.6
Patch foraging indifference point 0 sec0.10.40.60.70.7-0.5-0.6
Patch foraging indifference point AUC2.56.07.42.72.7-2.3-2.0
Delay disc. indifference point, 0s delay0.30.30.4-0.7-0.60.60.4
Delay disc. indifference point, 16s delay0.20.30.4-0.5-0.50.60.6
Delay disc. indifference point, 2s delay1.71.92.3-1.4-1.31.51.4
Delay disc. indifference point, 24s delay0.00.00.00.10.10.1-0.0
Delay disc. indifference point, 4s delay0.20.20.30.50.6-0.4-0.5
Delay disc. indifference point, 8s delay1.01.61.8-1.3-1.31.21.1
Indifference point function ln k1.13.33.7-1.8-1.81.91.7
Indifference point function log k1.13.33.7-1.8-1.81.91.7
Patch foraging total patch changes 0 sec0.20.60.70.80.9-0.6-0.7
Patch foraging total patch changes 12 sec2.12.83.82.01.9-1.5-1.3
Patch foraging total patch changes 18 sec1.33.03.71.91.9-1.5-1.5
Patch foraging total patch changes 24 sec0.41.51.81.31.3-1.1-0.9
Patch foraging total patch changes 6 sec2.13.54.42.12.1-1.7-1.6
Patch foraging time to switch 0 sec1.03.73.9-1.9-2.01.91.9
Patch foraging water rate 0 sec1.24.64.92.22.2-2.1-2.1
Patch foraging water rate 12 sec0.00.10.10.20.2-0.3-0.3
Patch foraging water rate 18 sec0.00.10.10.10.2-0.3-0.3
Patch foraging water rate 24 sec0.00.00.1-0.00.1-0.2-0.3
Patch foraging water rate 6 sec0.71.01.20.90.9-1.0-1.1
Seeking ratio, delayed vs. immediate footshock2.23.13.5-1.7-1.71.81.9
Distance traveled before self-admin0.00.00.10.10.1-0.2-0.3
Distance traveled after self-admin0.40.81.1-1.0-1.00.70.6
Extensor digitorum longus weight2.510.110.23.23.2-3.2-3.1
Bone: elastic displacement0.91.11.2-1.0-1.01.11.1
Bone: elastic work0.10.10.20.40.4-0.2-0.2
Bone: endosteal estimation0.00.00.00.00.00.10.1
Bone: endosteal perimeter0.10.10.20.40.4-0.3-0.3
Epididymis fat weight0.10.51.0-0.5-0.50.71.0
Delta time in closed arm before/after self-admin0.70.60.7-0.8-0.70.80.9
Delta time in open arm before/after self-admin0.20.20.30.50.4-0.4-0.5
Diff in mean of infusions in LGA sessions1.52.73.2-1.8-1.81.51.5
Delay discount exponential model param0.40.50.70.70.7-0.8-0.7
Extinction: sum of active levers before priming0.00.10.1-0.1-0.10.30.3
Active lever presses in extinction session 60.30.30.30.60.6-0.5-0.5
Bone: final force0.61.01.21.11.1-1.0-0.9
Bone: final moment1.01.61.81.31.3-1.2-1.2
Food consumed during 24 hour testing period3.77.47.8-2.8-2.82.62.7
Glucose0.81.21.4-1.2-1.21.01.1
Heart weight1.42.22.61.51.5-1.3-1.6
Delay discount hyperbolic model param0.30.40.60.60.6-0.8-0.6
Intermittent access intake day 1-15 change0.10.30.40.50.5-0.6-0.5
Intermittent access intake escalation0.10.50.60.70.7-0.8-0.7
Intermittent access intake escalation 20.00.00.1-0.2-0.20.10.1
Intermitt. access day 1 inactive lever presses0.10.60.91.00.9-0.5-0.8
Intermitt. access day 15 inactive lever presses0.10.30.70.80.8-0.10.2
Intermitt. access escalation Index0.10.40.5-0.6-0.60.60.7
Intermittent access day 1 total infusions1.13.44.01.92.0-1.8-1.6
Intermittent access day 15 total infusions0.61.41.71.31.3-1.2-1.0
Intermittent access terminal intake (last 3 days)0.71.21.51.21.2-1.1-1.0
Intermittent access total infusions2.22.63.01.71.7-1.6-1.4
Intermittent access day 1 locomotion0.40.71.11.01.0-0.6-0.6
Intermittent access day 15 total locomotion0.00.10.30.50.5-0.2-0.1
Intermittent access total locomotion1.61.92.51.51.6-1.2-1.1
Intermittent access standard deviation0.10.40.6-0.8-0.70.50.3
Left kidney weight3.527.830.05.55.4-5.0-5.1
Right kidney weight3.424.126.25.15.1-4.7-4.7
Cocaine induced anxiety0.00.00.0-0.2-0.20.00.0
Post-drug Anxiety0.00.00.1-0.3-0.30.10.1
Baseline Anxiety0.61.01.1-1.0-1.01.01.0
Tail length0.73.84.22.12.0-1.9-1.9
Length with tail0.83.53.81.91.9-1.8-1.8
Length without tail0.31.71.91.41.4-1.3-1.2
Times rat made contact with spout0.30.30.4-0.6-0.50.60.6
Lifetime Intake2.43.03.41.81.9-1.7-1.6
Liver weight, left3.05.15.82.42.4-2.1-2.1
Liver weight, right2.23.84.11.91.9-1.9-2.0
Locomotor activity1.82.93.21.81.8-1.5-1.7
Locomotor testing distance1.12.73.21.81.8-1.3-1.6
Locomotor testing rearing3.010.912.43.53.5-3.0-3.2
Locomotion in novel chamber1.11.51.7-1.2-1.21.11.3
Locomotion in novel chamber post-restriction0.61.82.4-1.3-1.21.51.2
Fecal boli incidents, locomotor time 10.20.40.70.70.8-0.3-0.6
Change in fecal boli incidents, locomotor task0.90.91.2-1.0-1.10.90.9
Time >=10cm from walls, locomotor time 10.00.00.10.10.20.10.2
Bouts of movement, locomotor time 13.34.34.6-2.0-2.12.12.0
Total resting periods, locomotor time 14.45.15.8-2.2-2.22.42.3
Rest time, locomotor task time 10.30.50.9-0.4-0.40.90.8
Distance moved, locomotor task time 10.41.01.70.80.8-1.3-1.1
Vertical activity count, locomotor time 10.00.30.50.40.3-0.7-0.7
Time >=10cm from walls, locomotor time 20.00.10.10.20.30.10.3
Bouts of movement, locomotor time 22.78.99.2-3.0-3.02.93.0
Total resting periods, locomotor time 22.28.89.2-3.0-2.92.93.0
Rest time, locomotor task time 20.40.60.9-0.8-0.70.90.8
Distance moved, locomotor task time 21.01.42.21.01.0-1.5-1.2
Vertical activity count, locomotor time 20.10.30.50.20.1-0.7-0.7
Light reinforcement 10.10.20.40.60.6-0.3-0.4
Light reinforcement 20.51.11.21.11.0-1.0-1.1
Bone: marrow area0.00.00.00.10.1-0.00.0
Bone: maximum diameter2.55.05.22.32.3-2.2-2.2
Bone: maximum force0.30.60.60.80.8-0.8-0.7
Bone: maximum moment0.50.91.00.91.0-1.0-0.9
Mean time between licks in bursts0.00.00.0-0.1-0.10.00.1
Mean num. licks in bursts2.36.36.5-2.6-2.52.52.4
Cd content in liver0.40.40.6-0.6-0.60.70.8
Co content in liver1.21.41.4-1.2-1.21.21.2
Cu content in liver0.60.70.70.80.8-0.9-0.9
Fe content in liver3.44.24.42.12.1-2.0-2.0
K content in liver0.40.40.50.60.7-0.6-0.6
Mg content in liver0.80.90.90.90.9-0.9-0.9
Mn content in liver1.21.31.71.01.0-1.3-1.3
Na content in liver0.00.00.0-0.1-0.0-0.1-0.1
Rb content in liver0.00.10.10.20.3-0.2-0.2
Se content in liver5.36.36.52.62.6-2.5-2.5
Sr content in liver0.10.10.10.30.3-0.3-0.3
Zn content in liver2.12.43.11.71.8-1.4-1.4
Bone: minimum diameter0.40.80.90.90.9-0.8-0.8
Time in familiar zone, hab. session 10.10.10.20.40.4-0.1-0.3
Time in novel zone, hab. session 10.70.80.90.90.8-1.0-0.8
Total zone transitions, hab. session 10.00.00.10.20.2-0.1-0.1
Total locomotion distance, hab. session 10.30.50.5-0.7-0.70.70.6
Locomotion velocity, hab. session 11.01.51.7-1.3-1.31.21.1
Time in familiar zone, hab. session 20.40.50.60.80.8-0.5-0.7
Time in novel zone, hab. session 20.40.40.5-0.7-0.70.50.6
Total zone transitions, hab. session 20.50.60.70.80.8-0.7-0.8
Total locomotion distance, hab. session 20.40.50.7-0.8-0.80.70.5
Locomotion velocity, hab. session 20.20.30.3-0.6-0.50.50.5
Novel to familiar place preference ratio0.50.70.80.90.9-0.8-0.7
Novelty place preference0.40.50.70.80.8-0.6-0.6
Time in novel zone, NPP test0.50.60.80.80.9-0.7-0.7
Total zone transitions, NPP test0.10.10.20.40.4-0.2-0.3
Total locomotion distance, NPP test0.00.00.10.20.2-0.1-0.1
Locomotion velocity, NPP test0.00.00.10.20.3-0.1-0.1
Intraocular pressure0.10.20.3-0.3-0.30.40.5
Delta distance traveled before/after self-admin0.91.01.4-1.2-1.20.90.8
Delta ambulatory time before/after self-admin0.20.30.4-0.6-0.70.30.4
Parametrial fat weight0.00.00.10.30.20.20.0
Pavlov. Cond. lever latency0.60.70.9-0.9-0.90.80.8
Pavlov. Cond. magazine entry latency0.20.30.40.60.6-0.5-0.6
Pavlov. Cond. change in total contacts0.50.60.8-0.7-0.60.70.9
Pavlov. Cond. index score0.40.50.60.70.7-0.6-0.6
Pavlov. Cond. latency score0.10.10.20.40.4-0.3-0.3
Pavlov. Cond. lever contacts0.40.50.60.70.8-0.6-0.6
Pavlov. Cond. magazine entry number0.10.20.2-0.4-0.40.30.4
Pavlov. Cond. intertrial magazine entries0.00.00.00.00.10.10.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.60.80.8-0.7-0.7
Pavlov. Cond. response bias1.31.61.81.41.4-1.2-1.2
Pavlov. Cond. lever latency0.10.20.2-0.5-0.50.30.4
Pavlov. Cond. magazine entry latency0.00.00.00.00.00.00.0
Pavlov. Cond. change in total contacts0.20.40.5-0.6-0.60.70.6
Pavlov. Cond. index score0.00.00.0-0.0-0.00.10.1
Pavlov. Cond. latency score0.00.00.1-0.2-0.20.30.2
Pavlov. Cond. lever contacts0.20.40.50.70.7-0.4-0.6
Pavlov. Cond. magazine entry number0.30.40.40.60.6-0.6-0.6
Pavlov. Cond. intertrial magazine entries0.00.00.00.10.1-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.10.10.0-0.1
Pavlov. Cond. response bias0.00.00.10.20.3-0.1-0.2
Time in closed arm before self-admin0.71.31.61.11.0-1.1-1.3
Time in closed arm after self-admin1.41.61.9-1.4-1.41.21.2
Time in open arm before self-admin0.70.81.1-0.8-0.71.01.1
Time in open arm after self-admin0.00.00.00.10.10.0-0.0
Bone: periosteal estimation0.40.91.11.01.0-0.9-0.9
Bone: periosteal perimeter0.61.31.41.21.2-1.1-1.1
Bone: post-yield work0.20.40.6-0.8-0.80.50.5
Progressive ratio test 1 active lever presses2.54.44.62.12.1-2.1-2.1
Progressive ratio test 1 breakpoint2.44.14.52.02.0-2.0-2.1
Progressive ratio test 1 inactive lever presses1.23.23.51.81.9-1.7-1.7
Progressive ratio test 2 active lever presses3.44.85.32.32.3-2.1-2.0
Progressive ratio test 2 breakpoint4.15.25.62.42.4-2.2-2.1
Progressive ratio test 2 inactive lever presses0.82.53.31.81.8-1.4-1.3
Incentive Sensitization - Responses1.23.23.81.91.9-1.7-1.5
Incentive Sensitization - Breakpoint1.43.13.71.91.9-1.7-1.5
Sum of active levers in priming session hrs 5-60.90.91.1-1.0-1.10.90.7
Progressive ratio0.92.83.7-1.6-1.51.61.9
Food seeking constrained by brief footshock3.03.84.1-2.0-1.92.01.8
Seeking ratio, punishment vs. effort0.00.00.1-0.1-0.10.2-0.2
Retroperitoneal fat weight0.00.00.00.20.10.00.0
Reaction time number correct1.34.54.82.12.1-2.2-2.2
Reaction time mean minus median0.31.61.8-1.3-1.31.21.3
Reaction time mean minus median AUC0.00.20.3-0.5-0.50.30.4
Reaction time num false alarms4.88.18.42.92.9-2.8-2.8
Reaction time num false alarms AUC3.27.47.82.82.8-2.6-2.6
Reaction time trials correct on left1.34.54.82.12.1-2.2-2.2
Reaction time trials on left1.34.64.92.12.1-2.2-2.2
Reaction time mean1.43.23.3-1.8-1.81.81.8
Reaction time mean AUC1.02.42.5-1.6-1.61.51.5
Median of all reaction times1.62.62.7-1.6-1.61.61.6
Reaction time omissions0.00.10.10.20.2-0.3-0.2
Reaction time false alarm rate0.70.91.11.01.0-0.9-0.9
Reaction time premature initiation rate0.20.30.4-0.7-0.60.50.5
Reaction time premature initiations0.10.20.20.30.3-0.5-0.5
Std. dev. reaction times0.51.61.8-1.3-1.31.21.2
Reaction time trials completed1.34.64.92.12.1-2.2-2.2
Reaction time trials AUC1.75.96.22.42.4-2.5-2.5
Run reversals in cocaine runway, females0.70.71.3-1.0-1.10.50.7
Run reversals in cocaine runway, males0.30.30.60.70.8-0.2-0.5
Latency to leave start box in cocaine runway0.10.10.2-0.5-0.50.10.0
Latency to leave start box in cocaine runway, F0.10.10.20.10.2-0.4-0.4
Latency to leave start box in cocaine runway, M0.10.10.2-0.5-0.50.30.1
Std. dev. time between licks in bursts0.10.20.30.40.4-0.6-0.6
Total sessions with >9 infusions2.83.54.32.02.1-1.8-1.6
Short access day 1 total inactive lever presses1.93.74.32.12.1-1.7-1.9
Short access day 10 total inactive lever presses0.11.01.3-1.0-1.01.10.8
Short access day 1 total infusions1.22.42.91.61.7-1.5-1.3
Short access day 10 total infusions2.84.75.92.42.4-2.0-1.8
Short access total infusions2.13.03.41.81.8-1.7-1.5
Short access day 1 locomotion2.84.65.12.22.3-2.1-2.0
Short access day 10 total locomotion0.00.10.3-0.1-0.10.40.5
Short access total locomotion0.50.81.31.11.1-0.6-0.5
One hour access (0.3 mA shock)0.10.20.20.40.4-0.4-0.5
Compulsive drug intake0.10.10.20.40.4-0.0-0.2
One hour access (shock baseline)0.51.41.61.01.1-1.3-1.3
Social response proportion0.50.70.80.80.7-0.8-0.9
Social responses0.71.01.11.01.0-0.9-0.9
Social time2.53.93.9-2.0-2.02.02.0
Soleus weight0.20.50.70.80.8-0.6-0.5
Bone: stiffness0.91.51.71.21.2-1.3-1.2
Tibialis anterior weight4.515.516.64.14.1-3.8-3.8
Time to tail flick, vehicle, before self-admin1.72.12.61.41.4-1.6-1.4
Time to tail flick, vehicle, after self-admin0.20.30.4-0.7-0.70.60.4
Time to tail flick, test, before self-admin0.60.61.0-1.0-1.00.50.5
Time to tail flick, test, after self-admin0.00.00.0-0.00.0-0.0-0.0
Delta time to tail flick, vehicle, before/after SA0.40.40.6-0.6-0.60.80.6
Delta time to tail flick, test, before/after SA1.11.41.91.41.4-1.0-0.9
Tibia length0.41.01.31.21.1-0.9-0.9
Ambulatory time before self-admin0.00.00.0-0.1-0.10.20.1
Ambulatory time after self-admin0.81.31.6-1.3-1.31.11.0
Bone: tissue strength0.40.40.5-0.7-0.70.60.4
Total heroin consumption0.00.10.10.20.1-0.2-0.4
Bone: trabecular number0.00.00.0-0.1-0.1-0.00.1
Bone: trabecular spacing0.00.00.00.10.10.0-0.1
Bone: trabecular thickness1.21.62.11.41.4-1.1-1.1
Bone: trabecular tissue density0.10.10.20.40.4-0.1-0.3
Water consumed over 24 hours0.30.70.7-0.9-0.80.80.8
Number of responses in last shaping day1.72.22.51.61.6-1.3-1.4