Ccny

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Ccny 0.12 0.08 5.9e-04 0.02 0.02 0.02 0.02 6.2e-03 4.3e-03 4.3e-03 1.6e-02
2 Adipose mRNA stability Ccny 0.02 0.02 9.2e-03 0 0.01 0 0.01 8.1e-02 2.6e-02 9.1e-02 4.3e-02
3 PL gene expression Ccny 0.08 0.07 2.2e-05 0.05 0.04 0.05 0.04 6.4e-06 2.9e-05 9.0e-06 2.4e-05
4 NAcc gene expression Ccny 0.11 0.07 4.9e-06 0.03 0.03 0.03 0.04 8.3e-06 9.2e-06 7.2e-06 3.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.30.8-0.9-0.1-0.2-0.3
Area under the delay curve0.81.03.6-1.9-0.3-0.4-0.4
BMI with tail0.10.51.31.10.50.60.3
BMI without tail1.34.012.6-3.5-1.1-1.2-1.0
Body weight1.25.18.60.4-2.9-2.6-2.2
Weight adjusted by age6.810.337.7-6.1-0.8-1.4-0.9
Bone surface2.03.64.81.4-1.9-2.0-2.2
Bone volume1.11.92.60.3-1.5-1.6-1.6
Breakpoint value in progressive ratio session0.60.72.41.50.20.50.3
Number of licking bursts0.40.62.5-1.60.20.20.3
Context. condit. distance diff. score0.70.91.10.91.11.10.8
Locomotion velocity, session 10.90.92.01.41.00.80.4
Locomotion distance, session 14.65.910.6-3.32.12.02.1
Locomotion velocity, session 20.20.20.60.80.2-0.1-0.4
Locomotion distance, session 23.14.312.0-3.51.41.31.3
Locomotion velocity, session 30.20.20.60.10.80.60.1
Locomotion distance, session 30.50.52.01.40.20.1-0.4
Stereotopy head waving bouts, day 31.72.02.80.6-1.7-1.6-1.4
Stereotopy head waving duration, day 31.92.23.31.8-1.4-1.4-1.4
Locomotion velocity, session 70.70.72.0-1.40.60.60.6
Locomotion distance, session 70.91.11.4-0.81.21.21.0
Stereotopy head waving bouts, day 71.61.82.31.0-1.3-1.4-1.5
Stereotopy head waving duration, day 71.11.31.90.7-1.2-1.3-1.4
Locomotion velocity, session 80.91.03.41.80.70.50.0
Locomotion distance, session 81.92.83.5-1.91.71.61.5
Degree of sensitization distance1.41.43.6-1.90.70.81.0
Degree of sensitization stereotypy1.41.52.10.9-1.3-1.3-1.4
Conditioned locomotion0.80.93.51.9-0.1-0.00.1
Cocaine response after cond. corrected1.11.34.52.10.50.50.4
Cocaine response after cond. not corrected0.60.72.71.6-0.1-0.1-0.1
Cocaine response before conditioning1.21.42.8-1.7-1.1-1.1-0.8
Saline control response0.50.71.0-0.0-1.0-1.0-0.9
Bone: connectivity density0.20.30.60.2-0.4-0.5-0.8
Bone: cortical apparent density0.91.34.9-2.2-0.3-0.20.2
Bone: cortical area0.00.00.1-0.00.30.20.2
Bone: cortical porosity2.52.74.52.1-1.4-1.4-1.5
Bone: cortical porosity1.92.03.61.9-1.3-1.2-1.2
Bone: cortical thickness0.40.70.9-0.51.00.90.8
Bone: cortical thickness0.00.00.1-0.2-0.0-0.1-0.3
Bone: cortical tissue density0.91.24.8-2.2-0.4-0.30.1
Condit. Reinf. active minus inactive responses1.31.42.50.2-1.2-1.3-1.6
Condit. Reinf. active-inactive response ratio1.01.12.21.5-0.8-0.7-1.0
Condit. Reinf. active responses2.53.24.70.1-1.9-2.1-2.2
Condit. Reinf. inactive responses1.21.42.00.5-1.3-1.4-1.3
Incentive salience index mean1.72.03.0-0.0-1.6-1.6-1.7
Condit. Reinf. lever presses0.91.32.1-0.2-1.4-1.3-1.1
Condit. Reinf. active minus inactive responses1.41.83.11.8-0.9-1.1-1.5
Condit. Reinf. active-inactive response ratio1.31.54.32.1-0.4-0.6-1.1
Condit. Reinf. active responses1.72.43.31.1-1.5-1.7-1.8
Condit. Reinf. inactive responses1.11.42.0-0.5-1.4-1.4-1.2
Condit. Reinf. lever presses0.50.71.7-1.30.80.60.4
Condit. Reinf. lever reinforcers received1.01.41.90.9-1.1-1.3-1.4
Conditioned reinforcement - actives2.84.817.34.2-0.7-0.8-0.7
Conditioned reinforcement - inactives1.92.89.93.10.50.90.1
Conditioned locomotion4.86.221.04.60.91.31.2
Patch foraging indifference point 0 sec0.61.11.5-1.20.80.91.2
Patch foraging indifference point AUC5.17.428.9-5.4-0.3-0.5-0.5
Delay disc. indifference point, 0s delay0.30.30.7-0.8-0.4-0.5-0.3
Delay disc. indifference point, 16s delay3.53.913.8-3.7-0.5-1.0-0.7
Delay disc. indifference point, 2s delay0.20.20.7-0.80.30.0-0.2
Delay disc. indifference point, 24s delay4.44.919.4-4.4-0.2-0.4-0.3
Delay disc. indifference point, 4s delay3.33.413.63.70.10.10.2
Delay disc. indifference point, 8s delay0.30.30.6-0.1-0.7-0.5-0.8
Indifference point function ln k5.59.536.16.00.81.00.6
Indifference point function log k5.59.536.16.00.81.00.6
Patch foraging total patch changes 0 sec0.61.11.8-1.00.91.01.3
Patch foraging total patch changes 12 sec9.512.348.6-7.00.40.20.5
Patch foraging total patch changes 18 sec1.62.48.1-2.80.50.60.9
Patch foraging total patch changes 24 sec2.03.413.4-3.7-0.1-0.30.1
Patch foraging total patch changes 6 sec4.56.825.4-5.00.80.60.9
Patch foraging time to switch 0 sec0.61.32.20.0-1.4-1.5-1.0
Patch foraging water rate 0 sec0.10.20.3-0.00.50.60.4
Patch foraging water rate 12 sec5.712.046.0-6.80.90.60.9
Patch foraging water rate 18 sec1.11.75.52.3-0.6-0.4-0.8
Patch foraging water rate 24 sec1.01.31.71.30.91.11.3
Patch foraging water rate 6 sec5.88.433.45.80.20.50.3
Seeking ratio, delayed vs. immediate footshock4.25.216.44.1-0.9-1.1-1.5
Distance traveled before self-admin3.54.716.5-4.1-0.4-1.1-0.9
Distance traveled after self-admin7.69.437.0-6.10.4-0.50.2
Extensor digitorum longus weight0.52.12.41.4-1.4-1.4-1.6
Bone: elastic displacement0.30.41.4-1.2-0.00.10.3
Bone: elastic work0.70.91.30.11.11.10.9
Bone: endosteal estimation1.02.22.80.8-1.7-1.7-1.6
Bone: endosteal perimeter0.40.91.2-0.5-1.1-1.1-1.0
Epididymis fat weight5.017.152.5-7.2-2.6-2.4-1.8
Delta time in closed arm before/after self-admin35.032.6124.2-11.1-0.9-1.5-1.8
Delta time in open arm before/after self-admin3.33.38.93.01.01.31.3
Diff in mean of infusions in LGA sessions0.60.71.60.40.90.51.2
Delay discount exponential model param0.30.30.91.00.30.30.3
Extinction: sum of active levers before priming11.512.648.3-7.0-0.6-1.0-0.9
Active lever presses in extinction session 611.811.847.0-6.90.1-0.30.1
Bone: final force1.62.64.1-2.01.51.51.4
Bone: final moment1.42.24.2-2.11.31.21.2
Food consumed during 24 hour testing period4.66.312.3-3.52.22.11.9
Glucose0.20.30.6-0.80.50.40.6
Heart weight0.60.92.4-1.60.90.40.2
Delay discount hyperbolic model param0.00.00.10.20.10.20.3
Intermittent access intake day 1-15 change0.91.97.1-2.70.60.30.3
Intermittent access intake escalation0.20.41.0-1.00.60.30.3
Intermittent access intake escalation 27.88.935.25.90.30.30.3
Intermitt. access day 1 inactive lever presses2.49.315.6-4.02.62.82.6
Intermitt. access day 15 inactive lever presses0.51.02.1-1.40.90.90.6
Intermitt. access escalation Index0.60.93.31.80.00.10.4
Intermittent access day 1 total infusions0.71.14.12.00.0-0.0-0.4
Intermittent access day 15 total infusions0.50.72.7-1.60.4-0.0-0.3
Intermittent access terminal intake (last 3 days)0.20.30.6-0.5-0.3-0.4-0.8
Intermittent access total infusions1.51.87.02.70.0-0.1-0.5
Intermittent access day 1 locomotion3.34.213.8-3.71.21.00.6
Intermittent access day 15 total locomotion6.311.444.3-6.70.90.60.2
Intermittent access total locomotion0.91.01.5-1.11.21.00.6
Intermittent access standard deviation5.611.744.86.70.50.90.9
Left kidney weight0.83.810.23.2-1.4-1.1-1.4
Right kidney weight2.09.234.35.9-1.0-0.7-1.0
Cocaine induced anxiety2.53.614.13.7-0.50.1-0.3
Post-drug Anxiety1.41.52.71.1-1.7-1.0-1.1
Baseline Anxiety5.46.324.7-5.0-0.5-0.5-0.2
Tail length3.112.016.7-2.1-4.1-4.0-3.3
Length with tail3.515.424.00.9-4.9-4.7-3.8
Length without tail2.89.224.04.9-2.4-2.0-1.7
Times rat made contact with spout0.00.00.10.10.30.20.2
Lifetime Intake3.34.015.84.0-0.0-0.1-0.5
Liver weight, left1.62.78.02.8-1.0-1.0-0.8
Liver weight, right0.40.72.91.70.10.00.1
Locomotor activity4.77.426.9-5.21.00.90.9
Locomotor testing distance7.914.356.6-7.50.50.20.3
Locomotor testing rearing0.00.00.10.30.20.10.1
Locomotion in novel chamber1.51.97.42.70.60.20.1
Locomotion in novel chamber post-restriction1.11.76.72.60.40.2-0.2
Fecal boli incidents, locomotor time 10.71.03.81.90.20.1-0.4
Change in fecal boli incidents, locomotor task11.311.142.6-6.50.80.51.0
Time >=10cm from walls, locomotor time 12.93.112.2-3.5-0.0-0.1-0.2
Bouts of movement, locomotor time 19.610.937.46.1-1.7-1.2-1.3
Total resting periods, locomotor time 16.67.324.44.9-1.5-1.1-1.2
Rest time, locomotor task time 11.31.63.1-1.8-1.0-1.0-1.1
Distance moved, locomotor task time 12.03.08.62.91.10.91.2
Vertical activity count, locomotor time 10.10.20.30.50.60.40.4
Time >=10cm from walls, locomotor time 22.33.48.8-3.01.11.41.2
Bouts of movement, locomotor time 27.712.335.76.0-2.4-1.8-2.0
Total resting periods, locomotor time 27.012.335.76.0-2.5-1.9-2.0
Rest time, locomotor task time 21.41.82.5-1.1-1.4-1.6-1.2
Distance moved, locomotor task time 26.67.927.95.30.91.21.1
Vertical activity count, locomotor time 24.35.923.04.80.30.7-0.0
Light reinforcement 17.518.370.28.40.61.21.1
Light reinforcement 210.816.664.68.00.71.00.4
Bone: marrow area1.02.33.00.8-1.7-1.7-1.6
Bone: maximum diameter0.61.11.30.9-1.1-1.1-1.2
Bone: maximum force0.81.41.8-0.91.31.31.1
Bone: maximum moment0.61.01.2-1.01.11.10.9
Mean time between licks in bursts0.81.92.4-0.8-1.6-1.5-1.5
Mean num. licks in bursts0.50.83.01.7-0.2-0.2-0.3
Cd content in liver3.03.33.9-1.71.81.82.0
Co content in liver1.61.92.2-1.11.41.51.5
Cu content in liver1.31.52.10.4-1.5-1.4-1.3
Fe content in liver2.22.73.70.7-1.9-1.9-1.7
K content in liver1.51.42.10.1-1.5-1.4-1.2
Mg content in liver2.42.53.20.8-1.8-1.8-1.7
Mn content in liver3.63.94.71.6-2.0-2.1-2.2
Na content in liver0.10.20.6-0.8-0.1-0.10.1
Rb content in liver0.40.50.50.6-0.7-0.7-0.7
Se content in liver3.23.74.91.0-2.2-2.2-2.1
Sr content in liver0.10.00.10.40.20.1-0.0
Zn content in liver0.50.60.90.2-0.9-0.9-0.8
Bone: minimum diameter0.00.00.0-0.1-0.1-0.10.1
Time in familiar zone, hab. session 11.51.51.61.2-1.1-1.3-1.2
Time in novel zone, hab. session 10.90.91.3-0.11.11.21.1
Total zone transitions, hab. session 13.14.35.7-2.42.02.01.9
Total locomotion distance, hab. session 11.01.45.5-2.3-0.00.00.2
Locomotion velocity, hab. session 11.01.45.5-2.3-0.1-0.00.2
Time in familiar zone, hab. session 20.40.50.8-0.20.90.80.7
Time in novel zone, hab. session 20.00.00.1-0.1-0.1-0.1-0.2
Total zone transitions, hab. session 22.53.25.3-2.31.51.51.6
Total locomotion distance, hab. session 20.60.81.8-1.3-0.9-0.8-0.5
Locomotion velocity, hab. session 20.91.22.6-1.6-1.0-0.9-0.6
Novel to familiar place preference ratio1.71.86.5-2.60.40.40.7
Novelty place preference1.11.24.2-2.10.30.30.6
Time in novel zone, NPP test0.80.93.2-1.80.20.30.5
Total zone transitions, NPP test0.81.13.3-1.80.60.60.7
Total locomotion distance, NPP test1.52.15.7-2.4-1.1-1.0-0.7
Locomotion velocity, NPP test1.62.37.3-2.7-0.9-0.8-0.5
Intraocular pressure1.31.82.7-1.61.00.91.7
Delta distance traveled before/after self-admin6.16.520.84.61.21.21.5
Delta ambulatory time before/after self-admin3.13.89.83.11.21.11.7
Parametrial fat weight0.61.41.8-1.3-1.3-1.0-1.0
Pavlov. Cond. lever latency2.22.83.0-1.51.71.71.7
Pavlov. Cond. magazine entry latency1.41.82.8-0.7-1.7-1.6-1.2
Pavlov. Cond. change in total contacts2.52.64.0-0.3-2.0-1.9-1.6
Pavlov. Cond. index score1.21.62.30.4-1.5-1.4-1.3
Pavlov. Cond. latency score1.62.12.90.6-1.7-1.6-1.5
Pavlov. Cond. lever contacts1.62.02.31.2-1.5-1.5-1.4
Pavlov. Cond. magazine entry number1.01.31.71.11.31.20.8
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.40.50.20.0
Pavlov. Cond. lever-magazine prob. diff.1.01.21.90.1-1.4-1.3-1.1
Pavlov. Cond. response bias1.11.42.3-0.2-1.5-1.4-1.1
Pavlov. Cond. lever latency0.40.61.00.7-1.0-0.8-0.5
Pavlov. Cond. magazine entry latency0.81.03.2-1.80.50.50.6
Pavlov. Cond. change in total contacts0.10.20.3-0.30.40.40.5
Pavlov. Cond. index score0.40.61.9-1.40.40.30.2
Pavlov. Cond. latency score0.40.62.1-1.40.40.20.2
Pavlov. Cond. lever contacts0.71.01.8-0.51.31.20.8
Pavlov. Cond. magazine entry number0.30.40.40.6-0.5-0.5-0.7
Pavlov. Cond. intertrial magazine entries0.81.24.02.0-0.3-0.3-0.8
Pavlov. Cond. lever-magazine prob. diff.0.20.31.1-1.00.30.20.2
Pavlov. Cond. response bias1.21.72.1-1.51.41.31.0
Time in closed arm before self-admin3.64.69.23.01.61.42.1
Time in closed arm after self-admin15.216.263.7-8.0-0.0-1.1-0.1
Time in open arm before self-admin7.38.029.7-5.5-0.7-0.9-1.0
Time in open arm after self-admin2.42.69.63.10.20.90.1
Bone: periosteal estimation0.71.41.70.9-1.2-1.3-1.3
Bone: periosteal perimeter0.20.40.50.1-0.7-0.7-0.7
Bone: post-yield work0.00.00.0-0.20.20.1-0.0
Progressive ratio test 1 active lever presses5.36.525.85.1-0.1-0.1-0.5
Progressive ratio test 1 breakpoint4.85.923.54.8-0.0-0.0-0.4
Progressive ratio test 1 inactive lever presses1.21.83.41.91.11.40.8
Progressive ratio test 2 active lever presses5.26.120.24.5-1.2-0.9-1.4
Progressive ratio test 2 breakpoint5.96.823.64.9-1.1-0.8-1.3
Progressive ratio test 2 inactive lever presses1.62.510.13.20.00.3-0.1
Incentive Sensitization - Responses3.14.312.43.5-1.5-1.1-1.3
Incentive Sensitization - Breakpoint3.14.011.53.4-1.4-1.0-1.2
Sum of active levers in priming session hrs 5-61.51.42.2-1.50.91.40.9
Progressive ratio4.97.829.95.50.60.80.3
Food seeking constrained by brief footshock1.61.94.10.6-2.0-1.4-1.1
Seeking ratio, punishment vs. effort2.33.36.7-2.6-1.8-1.5-0.9
Retroperitoneal fat weight0.31.32.8-0.8-1.7-1.0-0.7
Reaction time number correct2.24.215.33.90.50.80.6
Reaction time mean minus median0.10.30.90.9-0.5-0.30.4
Reaction time mean minus median AUC0.20.40.9-1.0-0.6-0.5-0.1
Reaction time num false alarms2.23.16.02.51.51.61.3
Reaction time num false alarms AUC2.03.16.92.61.31.51.3
Reaction time trials correct on left2.24.215.33.90.50.80.6
Reaction time trials on left2.85.320.04.50.50.80.6
Reaction time mean1.01.62.9-0.51.11.41.7
Reaction time mean AUC0.50.81.60.30.61.01.3
Median of all reaction times1.82.53.5-1.01.51.81.9
Reaction time omissions0.30.50.91.0-0.8-0.4-0.5
Reaction time false alarm rate0.30.50.7-0.00.80.80.7
Reaction time premature initiation rate1.01.41.7-1.3-1.3-1.3-0.8
Reaction time premature initiations0.61.13.21.8-0.8-0.6-0.4
Std. dev. reaction times0.30.51.3-0.70.20.51.1
Reaction time trials completed2.85.320.04.50.50.80.6
Reaction time trials AUC3.05.721.34.60.60.90.7
Run reversals in cocaine runway, females2.22.22.9-1.0-1.7-1.6-1.6
Run reversals in cocaine runway, males1.11.14.22.00.10.30.3
Latency to leave start box in cocaine runway4.44.919.44.4-0.00.5-0.4
Latency to leave start box in cocaine runway, F0.10.10.30.2-0.30.1-0.5
Latency to leave start box in cocaine runway, M11.510.841.66.40.61.00.2
Std. dev. time between licks in bursts0.81.11.60.8-1.3-1.1-1.0
Total sessions with >9 infusions5.97.128.05.30.50.40.2
Short access day 1 total inactive lever presses4.35.612.1-3.51.92.01.6
Short access day 10 total inactive lever presses11.427.7103.510.20.91.81.9
Short access day 1 total infusions19.826.3105.010.2-0.2-0.0-0.2
Short access day 10 total infusions0.40.51.91.40.30.2-0.1
Short access total infusions6.98.834.65.9-0.3-0.3-0.5
Short access day 1 locomotion3.84.717.04.10.80.80.6
Short access day 10 total locomotion0.91.62.91.71.01.11.2
Short access total locomotion1.11.42.1-1.51.21.10.8
One hour access (0.3 mA shock)2.42.89.63.10.60.80.7
Compulsive drug intake1.41.72.8-0.5-1.5-1.7-1.3
One hour access (shock baseline)1.31.95.4-2.30.91.00.7
Social response proportion0.20.31.11.0-0.10.0-0.1
Social responses1.41.87.0-2.6-0.1-0.2-0.1
Social time1.11.42.20.81.51.41.0
Soleus weight0.20.72.01.40.50.50.4
Bone: stiffness0.71.22.5-1.60.80.80.9
Tibialis anterior weight0.10.50.80.10.90.80.6
Time to tail flick, vehicle, before self-admin26.427.4105.2-10.3-0.7-1.8-0.8
Time to tail flick, vehicle, after self-admin3.04.014.73.8-0.5-0.9-0.6
Time to tail flick, test, before self-admin1.21.32.1-1.4-1.0-1.4-0.2
Time to tail flick, test, after self-admin8.58.925.0-5.0-1.8-2.3-1.5
Delta time to tail flick, vehicle, before/after SA17.816.965.18.10.91.20.7
Delta time to tail flick, test, before/after SA1.51.54.6-2.2-0.6-0.4-1.0
Tibia length1.23.34.30.7-2.0-2.1-2.1
Ambulatory time before self-admin4.46.625.6-5.1-0.1-0.9-0.5
Ambulatory time after self-admin4.45.220.3-4.50.3-0.60.1
Bone: tissue strength1.21.21.5-0.91.11.11.2
Total heroin consumption7.38.633.5-5.80.60.20.6
Bone: trabecular number0.00.00.00.20.0-0.1-0.2
Bone: trabecular spacing0.30.41.0-1.00.20.30.5
Bone: trabecular thickness0.50.61.1-1.1-0.7-0.7-0.6
Bone: trabecular tissue density0.50.71.71.30.30.60.8
Water consumed over 24 hours2.33.19.9-3.10.90.90.9
Number of responses in last shaping day6.36.926.9-5.20.70.20.1