Ccdc8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Ccdc8 0.09 0.08 2.5e-05 0.03 0.04 0.03 0.03 1.2e-03 3.9e-04 1.6e-03 1.8e-03
2 Adipose gene expression Ccdc8 0.06 0.04 2.5e-06 0.04 0.04 0.04 0.04 1.5e-05 1.1e-05 3.3e-05 3.4e-05
3 Brain gene expression Ccdc8 0.16 0.21 7.1e-09 0.09 0.09 0.08 0.09 1.3e-08 1.9e-08 4.1e-08 1.5e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.1-0.3-0.3-0.2
Area under the delay curve0.70.80.80.90.90.9
BMI with tail1.13.94.0-2.0-2.0-2.0
BMI without tail1.85.45.6-2.4-2.3-2.3
Body weight2.29.59.5-3.1-3.1-3.1
Weight adjusted by age0.10.10.2-0.3-0.3-0.4
Bone surface0.61.11.2-1.1-1.1-1.0
Bone volume0.30.60.6-0.8-0.8-0.8
Breakpoint value in progressive ratio session3.34.04.12.02.02.0
Number of licking bursts2.64.24.2-2.1-2.1-2.0
Context. condit. distance diff. score0.00.00.0-0.2-0.2-0.2
Locomotion velocity, session 10.20.20.30.50.50.4
Locomotion distance, session 10.00.00.00.20.10.1
Locomotion velocity, session 21.92.22.2-1.5-1.5-1.5
Locomotion distance, session 20.50.70.8-0.8-0.8-0.9
Locomotion velocity, session 30.30.40.4-0.6-0.6-0.7
Locomotion distance, session 30.80.80.90.90.90.9
Stereotopy head waving bouts, day 30.91.11.2-1.0-1.0-1.1
Stereotopy head waving duration, day 30.60.70.8-0.8-0.8-0.9
Locomotion velocity, session 70.60.70.70.80.80.8
Locomotion distance, session 70.00.00.1-0.2-0.2-0.2
Stereotopy head waving bouts, day 70.60.60.7-0.8-0.8-0.8
Stereotopy head waving duration, day 70.50.60.7-0.8-0.8-0.8
Locomotion velocity, session 80.00.00.00.10.10.1
Locomotion distance, session 80.00.00.0-0.1-0.1-0.2
Degree of sensitization distance0.90.91.0-0.9-0.9-1.0
Degree of sensitization stereotypy0.70.70.7-0.8-0.9-0.9
Conditioned locomotion0.20.20.20.40.40.5
Cocaine response after cond. corrected0.30.40.4-0.6-0.6-0.6
Cocaine response after cond. not corrected1.11.31.3-1.1-1.1-1.1
Cocaine response before conditioning2.02.42.4-1.5-1.5-1.5
Saline control response1.51.92.0-1.4-1.4-1.4
Bone: connectivity density0.00.10.1-0.3-0.3-0.2
Bone: cortical apparent density0.00.10.10.20.20.3
Bone: cortical area2.03.03.1-1.7-1.7-1.8
Bone: cortical porosity0.10.10.10.40.40.4
Bone: cortical porosity0.00.00.0-0.1-0.1-0.1
Bone: cortical thickness0.60.90.9-1.0-1.0-1.0
Bone: cortical thickness1.01.21.2-1.1-1.1-1.1
Bone: cortical tissue density0.10.10.10.30.30.4
Condit. Reinf. active minus inactive responses0.91.01.1-1.0-1.0-1.0
Condit. Reinf. active-inactive response ratio0.90.91.0-0.9-1.0-1.0
Condit. Reinf. active responses0.60.70.7-0.8-0.8-0.8
Condit. Reinf. inactive responses0.10.10.10.30.30.3
Incentive salience index mean0.81.01.0-1.0-1.0-1.0
Condit. Reinf. lever presses0.30.40.4-0.6-0.6-0.6
Condit. Reinf. active minus inactive responses0.00.00.0-0.1-0.1-0.1
Condit. Reinf. active-inactive response ratio0.10.10.1-0.3-0.3-0.2
Condit. Reinf. active responses0.10.10.10.30.30.3
Condit. Reinf. inactive responses0.40.50.50.70.70.7
Condit. Reinf. lever presses0.10.10.1-0.4-0.4-0.3
Condit. Reinf. lever reinforcers received0.10.10.10.30.30.3
Conditioned reinforcement - actives2.54.44.7-2.0-2.1-2.2
Conditioned reinforcement - inactives2.23.23.4-1.7-1.8-1.8
Conditioned locomotion1.72.22.5-1.4-1.4-1.6
Patch foraging indifference point 0 sec0.20.50.5-0.7-0.7-0.7
Patch foraging indifference point AUC4.56.46.7-2.5-2.5-2.6
Delay disc. indifference point, 0s delay0.30.40.40.60.60.6
Delay disc. indifference point, 16s delay0.30.30.30.50.50.5
Delay disc. indifference point, 2s delay1.51.71.81.41.31.2
Delay disc. indifference point, 24s delay0.00.00.0-0.0-0.1-0.0
Delay disc. indifference point, 4s delay0.20.20.3-0.4-0.4-0.5
Delay disc. indifference point, 8s delay1.41.61.71.31.31.3
Indifference point function ln k1.93.33.31.81.81.8
Indifference point function log k1.93.33.31.81.81.8
Patch foraging total patch changes 0 sec0.30.60.6-0.8-0.8-0.8
Patch foraging total patch changes 12 sec2.53.33.5-1.8-1.8-1.9
Patch foraging total patch changes 18 sec2.03.13.2-1.8-1.8-1.8
Patch foraging total patch changes 24 sec1.11.82.0-1.3-1.3-1.4
Patch foraging total patch changes 6 sec2.53.84.0-1.9-1.9-2.0
Patch foraging time to switch 0 sec1.73.53.71.91.91.8
Patch foraging water rate 0 sec2.14.44.6-2.2-2.2-2.0
Patch foraging water rate 12 sec0.00.10.1-0.3-0.3-0.2
Patch foraging water rate 18 sec0.00.00.1-0.2-0.2-0.2
Patch foraging water rate 24 sec0.00.00.0-0.2-0.10.1
Patch foraging water rate 6 sec0.71.01.0-1.0-1.0-0.9
Seeking ratio, delayed vs. immediate footshock2.32.83.01.61.61.7
Distance traveled before self-admin0.00.00.0-0.0-0.0-0.1
Distance traveled after self-admin0.81.01.01.01.01.0
Extensor digitorum longus weight2.49.49.5-3.1-3.1-3.1
Bone: elastic displacement0.80.90.91.01.00.9
Bone: elastic work0.10.10.2-0.4-0.4-0.4
Bone: endosteal estimation0.00.00.0-0.0-0.0-0.0
Bone: endosteal perimeter0.10.20.2-0.4-0.4-0.4
Epididymis fat weight0.10.30.40.50.50.6
Delta time in closed arm before/after self-admin0.60.50.50.70.70.7
Delta time in open arm before/after self-admin0.20.20.3-0.4-0.4-0.5
Diff in mean of infusions in LGA sessions2.32.82.91.71.71.7
Delay discount exponential model param0.50.50.6-0.7-0.7-0.7
Extinction: sum of active levers before priming0.00.00.00.10.10.1
Active lever presses in extinction session 60.40.40.4-0.6-0.6-0.7
Bone: final force0.71.11.1-1.0-1.0-1.0
Bone: final moment1.01.61.6-1.3-1.3-1.3
Food consumed during 24 hour testing period5.17.07.12.72.62.6
Glucose0.71.11.21.01.01.1
Heart weight1.32.02.1-1.4-1.4-1.4
Delay discount hyperbolic model param0.40.40.4-0.7-0.6-0.6
Intermittent access intake day 1-15 change0.20.40.5-0.6-0.6-0.7
Intermittent access intake escalation0.30.60.7-0.7-0.7-0.9
Intermittent access intake escalation 20.00.00.00.20.20.1
Intermitt. access day 1 inactive lever presses0.10.50.5-0.7-0.7-0.7
Intermitt. access day 15 inactive lever presses0.20.50.7-0.6-0.6-0.8
Intermitt. access escalation Index0.40.50.60.70.70.8
Intermittent access day 1 total infusions2.64.14.5-2.1-2.1-1.9
Intermittent access day 15 total infusions1.31.92.0-1.4-1.4-1.4
Intermittent access terminal intake (last 3 days)1.31.71.7-1.3-1.3-1.3
Intermittent access total infusions2.73.23.4-1.8-1.8-1.7
Intermittent access day 1 locomotion0.81.01.1-1.0-1.0-1.0
Intermittent access day 15 total locomotion0.20.30.4-0.6-0.6-0.5
Intermittent access total locomotion2.02.42.4-1.5-1.5-1.6
Intermittent access standard deviation0.10.30.30.50.60.5
Left kidney weight5.927.327.7-5.3-5.2-5.2
Right kidney weight5.324.024.3-4.9-4.9-4.9
Cocaine induced anxiety0.00.00.00.10.20.2
Post-drug Anxiety0.10.10.10.20.20.3
Baseline Anxiety0.80.91.01.01.00.9
Tail length1.04.04.1-2.0-2.0-2.0
Length with tail0.83.53.7-1.9-1.8-1.9
Length without tail0.51.61.8-1.2-1.2-1.3
Times rat made contact with spout0.30.30.30.60.60.5
Lifetime Intake3.13.73.9-2.0-1.9-1.9
Liver weight, left3.05.05.4-2.2-2.2-2.3
Liver weight, right2.23.83.9-2.0-1.9-1.9
Locomotor activity1.72.62.8-1.7-1.7-1.5
Locomotor testing distance1.32.32.5-1.5-1.6-1.5
Locomotor testing rearing4.99.910.1-3.2-3.2-3.1
Locomotion in novel chamber1.01.31.31.11.11.1
Locomotion in novel chamber post-restriction0.91.41.51.21.21.1
Fecal boli incidents, locomotor time 10.30.40.5-0.6-0.6-0.7
Change in fecal boli incidents, locomotor task0.90.91.10.90.91.0
Time >=10cm from walls, locomotor time 10.00.00.00.10.0-0.1
Bouts of movement, locomotor time 13.54.04.12.02.01.9
Total resting periods, locomotor time 14.04.44.62.12.12.0
Rest time, locomotor task time 10.10.20.20.50.50.2
Distance moved, locomotor task time 10.40.60.8-0.9-0.9-0.6
Vertical activity count, locomotor time 10.10.10.2-0.4-0.4-0.2
Time >=10cm from walls, locomotor time 20.00.00.1-0.1-0.1-0.2
Bouts of movement, locomotor time 25.18.28.32.92.92.8
Total resting periods, locomotor time 24.47.88.02.82.82.7
Rest time, locomotor task time 20.30.40.50.70.70.5
Distance moved, locomotor task time 20.91.01.2-1.1-1.1-0.8
Vertical activity count, locomotor time 20.00.10.1-0.3-0.3-0.1
Light reinforcement 10.10.30.4-0.4-0.5-0.6
Light reinforcement 20.71.11.3-1.0-1.0-1.1
Bone: marrow area0.00.00.0-0.1-0.1-0.1
Bone: maximum diameter2.64.84.9-2.2-2.2-2.2
Bone: maximum force0.30.60.7-0.8-0.8-0.8
Bone: maximum moment0.50.91.0-1.0-1.0-0.9
Mean time between licks in bursts0.00.00.00.00.00.1
Mean num. licks in bursts3.86.06.12.52.52.4
Cd content in liver0.30.40.40.60.60.5
Co content in liver1.11.21.31.11.11.1
Cu content in liver0.50.60.6-0.8-0.7-0.7
Fe content in liver3.54.24.3-2.1-2.1-2.0
K content in liver0.30.30.4-0.6-0.6-0.5
Mg content in liver0.70.70.8-0.9-0.9-0.8
Mn content in liver0.91.01.2-1.1-1.0-0.9
Na content in liver0.00.00.00.00.00.1
Rb content in liver0.00.00.0-0.2-0.2-0.2
Se content in liver5.16.06.1-2.5-2.5-2.4
Sr content in liver0.10.10.1-0.3-0.3-0.3
Zn content in liver2.12.32.5-1.5-1.5-1.6
Bone: minimum diameter0.40.80.8-0.9-0.9-0.9
Time in familiar zone, hab. session 10.10.10.2-0.3-0.3-0.4
Time in novel zone, hab. session 10.70.70.7-0.9-0.8-0.8
Total zone transitions, hab. session 10.00.00.1-0.2-0.2-0.3
Total locomotion distance, hab. session 10.30.50.50.70.70.7
Locomotion velocity, hab. session 11.11.51.71.31.31.2
Time in familiar zone, hab. session 20.50.50.5-0.7-0.7-0.7
Time in novel zone, hab. session 20.40.40.40.70.70.7
Total zone transitions, hab. session 20.40.50.6-0.7-0.7-0.8
Total locomotion distance, hab. session 20.50.60.70.80.80.8
Locomotion velocity, hab. session 20.20.30.30.60.60.5
Novel to familiar place preference ratio0.60.70.7-0.8-0.8-0.8
Novelty place preference0.50.50.6-0.7-0.7-0.8
Time in novel zone, NPP test0.60.60.7-0.8-0.8-0.8
Total zone transitions, NPP test0.10.10.1-0.3-0.4-0.4
Total locomotion distance, NPP test0.00.00.0-0.1-0.2-0.2
Locomotion velocity, NPP test0.00.00.1-0.2-0.2-0.2
Intraocular pressure0.10.10.10.30.30.2
Delta distance traveled before/after self-admin1.01.01.11.01.01.1
Delta ambulatory time before/after self-admin0.20.30.30.50.50.6
Parametrial fat weight0.00.00.1-0.2-0.2-0.2
Pavlov. Cond. lever latency0.60.70.80.80.90.9
Pavlov. Cond. magazine entry latency0.20.30.3-0.5-0.6-0.5
Pavlov. Cond. change in total contacts0.40.40.40.70.60.6
Pavlov. Cond. index score0.40.50.5-0.7-0.7-0.7
Pavlov. Cond. latency score0.10.10.1-0.4-0.4-0.4
Pavlov. Cond. lever contacts0.40.50.5-0.7-0.7-0.7
Pavlov. Cond. magazine entry number0.10.10.10.40.40.4
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.0-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.7-0.7-0.8
Pavlov. Cond. response bias1.31.61.6-1.2-1.3-1.3
Pavlov. Cond. lever latency0.10.20.20.40.40.4
Pavlov. Cond. magazine entry latency0.00.00.0-0.0-0.0-0.0
Pavlov. Cond. change in total contacts0.20.40.40.60.60.6
Pavlov. Cond. index score0.00.00.00.10.10.0
Pavlov. Cond. latency score0.00.00.00.20.20.2
Pavlov. Cond. lever contacts0.30.40.4-0.6-0.6-0.6
Pavlov. Cond. magazine entry number0.30.30.3-0.6-0.6-0.6
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.1-0.1-0.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.1-0.1-0.1
Pavlov. Cond. response bias0.00.00.1-0.2-0.2-0.2
Time in closed arm before self-admin0.60.80.8-0.9-0.9-0.9
Time in closed arm after self-admin1.71.92.01.31.31.4
Time in open arm before self-admin0.50.50.60.70.70.8
Time in open arm after self-admin0.00.00.0-0.1-0.1-0.1
Bone: periosteal estimation0.51.01.0-1.0-1.0-1.0
Bone: periosteal perimeter0.71.31.3-1.1-1.1-1.1
Bone: post-yield work0.30.40.50.60.60.7
Progressive ratio test 1 active lever presses4.15.05.3-2.3-2.2-2.2
Progressive ratio test 1 breakpoint3.74.64.8-2.2-2.1-2.1
Progressive ratio test 1 inactive lever presses2.53.73.9-2.0-1.9-1.8
Progressive ratio test 2 active lever presses4.45.15.3-2.3-2.3-2.3
Progressive ratio test 2 breakpoint4.85.55.6-2.3-2.3-2.4
Progressive ratio test 2 inactive lever presses1.82.93.1-1.6-1.7-1.8
Incentive Sensitization - Responses2.33.33.5-1.8-1.8-1.9
Incentive Sensitization - Breakpoint2.43.13.4-1.7-1.7-1.8
Sum of active levers in priming session hrs 5-61.00.90.91.01.00.9
Progressive ratio1.32.02.11.41.41.4
Food seeking constrained by brief footshock3.03.74.02.02.01.8
Seeking ratio, punishment vs. effort0.00.10.10.30.20.2
Retroperitoneal fat weight0.00.10.1-0.3-0.3-0.2
Reaction time number correct2.24.24.3-2.1-2.0-2.1
Reaction time mean minus median0.61.41.51.21.21.1
Reaction time mean minus median AUC0.10.20.20.50.50.3
Reaction time num false alarms5.47.67.7-2.8-2.8-2.7
Reaction time num false alarms AUC4.57.17.1-2.7-2.7-2.7
Reaction time trials correct on left2.24.24.3-2.1-2.0-2.1
Reaction time trials on left2.34.34.3-2.1-2.1-2.1
Reaction time mean1.82.93.01.71.71.6
Reaction time mean AUC1.42.22.31.51.51.4
Median of all reaction times1.72.32.41.51.51.5
Reaction time omissions0.00.10.1-0.2-0.2-0.3
Reaction time false alarm rate0.70.90.9-1.0-1.0-0.9
Reaction time premature initiation rate0.30.40.40.60.60.7
Reaction time premature initiations0.10.10.1-0.3-0.3-0.3
Std. dev. reaction times0.81.41.51.21.21.1
Reaction time trials completed2.34.34.3-2.1-2.1-2.1
Reaction time trials AUC2.95.65.7-2.4-2.3-2.4
Run reversals in cocaine runway, females0.60.60.70.80.80.7
Run reversals in cocaine runway, males0.40.40.5-0.6-0.6-0.7
Latency to leave start box in cocaine runway0.10.20.20.30.30.5
Latency to leave start box in cocaine runway, F0.10.10.1-0.3-0.3-0.1
Latency to leave start box in cocaine runway, M0.20.20.20.40.40.5
Std. dev. time between licks in bursts0.10.20.2-0.5-0.4-0.4
Total sessions with >9 infusions3.74.44.6-2.2-2.1-2.1
Short access day 1 total inactive lever presses2.83.73.7-1.9-1.9-1.9
Short access day 10 total inactive lever presses0.51.21.21.11.11.1
Short access day 1 total infusions2.22.93.1-1.8-1.7-1.7
Short access day 10 total infusions4.45.65.8-2.4-2.4-2.3
Short access total infusions2.93.73.9-2.0-1.9-1.8
Short access day 1 locomotion4.25.25.7-2.4-2.3-2.2
Short access day 10 total locomotion0.00.00.00.20.20.0
Short access total locomotion1.01.11.3-1.0-1.0-1.1
One hour access (0.3 mA shock)0.20.20.3-0.5-0.4-0.6
Compulsive drug intake0.00.10.1-0.2-0.2-0.3
One hour access (shock baseline)1.11.61.8-1.3-1.3-1.2
Social response proportion0.50.60.8-0.7-0.7-0.9
Social responses0.81.01.2-0.9-0.9-1.1
Social time2.63.63.71.91.91.8
Soleus weight0.20.60.6-0.7-0.8-0.8
Bone: stiffness0.91.51.6-1.3-1.2-1.2
Tibialis anterior weight4.414.814.8-3.8-3.8-3.9
Time to tail flick, vehicle, before self-admin1.81.82.1-1.4-1.4-1.2
Time to tail flick, vehicle, after self-admin0.30.40.40.60.60.6
Time to tail flick, test, before self-admin0.60.60.80.70.80.9
Time to tail flick, test, after self-admin0.00.00.0-0.0-0.00.0
Delta time to tail flick, vehicle, before/after SA0.30.30.40.60.60.4
Delta time to tail flick, test, before/after SA1.21.31.5-1.1-1.1-1.2
Tibia length0.41.11.1-1.0-1.0-1.0
Ambulatory time before self-admin0.00.10.10.20.20.2
Ambulatory time after self-admin1.31.51.61.21.21.3
Bone: tissue strength0.40.40.40.60.60.7
Total heroin consumption0.00.00.0-0.2-0.2-0.2
Bone: trabecular number0.00.00.0-0.1-0.00.0
Bone: trabecular spacing0.00.00.00.00.0-0.1
Bone: trabecular thickness1.41.82.0-1.3-1.3-1.4
Bone: trabecular tissue density0.10.10.1-0.3-0.3-0.4
Water consumed over 24 hours0.50.70.70.80.80.8
Number of responses in last shaping day2.02.12.5-1.4-1.4-1.6