Capn11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Capn11 0.19 0.07 0.0e+00 0.18 0.18 0.18 0.18 1.6e-19 2.8e-19 2.2e-19 1.2e-19
2 Liver alternative polyA XM_063267563.1 0.08 0.04 2.6e-09 0.09 0.07 0.08 0.08 4.5e-10 1.8e-08 5.2e-09 3.2e-09
3 Liver alternative polyA XM_063267563.1 0.09 0.04 3.2e-09 0.08 0.07 0.06 0.07 2.4e-09 1.8e-08 9.6e-07 2.6e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.12.02.01.4-1.4-1.4
Area under the delay curve1.21.41.51.2-1.2-1.2
BMI with tail4.214.516.4-4.13.73.7
BMI without tail6.018.220.2-4.54.14.1
Body weight2.711.812.8-3.63.43.4
Weight adjusted by age0.10.10.10.3-0.3-0.3
Bone surface5.19.29.43.0-3.1-3.1
Bone volume3.86.97.02.6-2.6-2.6
Breakpoint value in progressive ratio session1.41.71.81.2-1.3-1.3
Number of licking bursts0.20.30.4-0.60.50.5
Context. condit. distance diff. score2.12.62.6-1.61.61.6
Locomotion velocity, session 10.40.40.50.7-0.6-0.6
Locomotion distance, session 10.00.00.0-0.10.20.2
Locomotion velocity, session 22.93.43.5-1.81.91.9
Locomotion distance, session 20.20.20.2-0.50.50.5
Locomotion velocity, session 30.10.10.1-0.30.20.2
Locomotion distance, session 30.10.10.10.2-0.3-0.3
Stereotopy head waving bouts, day 30.00.00.0-0.20.10.1
Stereotopy head waving duration, day 30.40.40.5-0.70.60.6
Locomotion velocity, session 71.21.31.31.1-1.2-1.2
Locomotion distance, session 70.10.10.10.3-0.3-0.3
Stereotopy head waving bouts, day 70.50.60.6-0.80.70.7
Stereotopy head waving duration, day 70.00.00.0-0.20.20.2
Locomotion velocity, session 80.80.91.01.0-1.0-1.0
Locomotion distance, session 80.81.11.1-1.11.11.1
Degree of sensitization distance0.00.00.0-0.20.20.2
Degree of sensitization stereotypy0.10.10.1-0.40.30.3
Conditioned locomotion1.01.21.31.0-1.1-1.1
Cocaine response after cond. corrected0.20.20.20.5-0.5-0.5
Cocaine response after cond. not corrected0.40.50.60.8-0.6-0.6
Cocaine response before conditioning0.81.01.31.1-0.9-0.9
Saline control response0.50.60.80.9-0.8-0.8
Bone: connectivity density1.52.32.31.5-1.5-1.5
Bone: cortical apparent density0.10.10.20.5-0.3-0.3
Bone: cortical area0.30.50.50.7-0.7-0.7
Bone: cortical porosity0.91.01.1-1.10.90.9
Bone: cortical porosity0.80.91.1-1.00.90.9
Bone: cortical thickness0.10.20.2-0.40.50.5
Bone: cortical thickness0.20.20.20.5-0.5-0.5
Bone: cortical tissue density0.10.20.30.6-0.4-0.4
Condit. Reinf. active minus inactive responses1.41.61.61.2-1.3-1.3
Condit. Reinf. active-inactive response ratio0.50.50.50.7-0.7-0.7
Condit. Reinf. active responses0.70.80.80.9-0.9-0.9
Condit. Reinf. inactive responses0.10.20.2-0.40.40.4
Incentive salience index mean0.40.50.50.7-0.7-0.7
Condit. Reinf. lever presses0.30.40.4-0.60.60.6
Condit. Reinf. active minus inactive responses0.20.30.30.6-0.5-0.5
Condit. Reinf. active-inactive response ratio0.00.00.10.3-0.2-0.2
Condit. Reinf. active responses0.50.70.80.9-0.8-0.8
Condit. Reinf. inactive responses0.30.40.50.7-0.6-0.6
Condit. Reinf. lever presses0.00.00.00.1-0.1-0.1
Condit. Reinf. lever reinforcers received0.40.60.70.8-0.7-0.7
Conditioned reinforcement - actives0.00.10.10.4-0.2-0.2
Conditioned reinforcement - inactives0.50.70.9-0.60.90.9
Conditioned locomotion0.00.00.00.00.20.2
Patch foraging indifference point 0 sec0.71.31.5-1.01.21.2
Patch foraging indifference point AUC0.00.00.0-0.10.00.0
Delay disc. indifference point, 0s delay2.42.62.81.7-1.6-1.6
Delay disc. indifference point, 16s delay1.01.11.21.1-1.1-1.1
Delay disc. indifference point, 2s delay0.40.40.60.8-0.6-0.6
Delay disc. indifference point, 24s delay0.10.10.1-0.20.40.4
Delay disc. indifference point, 4s delay0.10.10.20.4-0.3-0.3
Delay disc. indifference point, 8s delay2.73.23.21.8-1.8-1.8
Indifference point function ln k0.30.50.6-0.70.80.8
Indifference point function log k0.30.50.6-0.70.80.8
Patch foraging total patch changes 0 sec0.91.71.9-1.11.41.4
Patch foraging total patch changes 12 sec1.01.31.4-1.21.11.1
Patch foraging total patch changes 18 sec0.10.10.30.5-0.3-0.3
Patch foraging total patch changes 24 sec0.60.91.0-1.01.01.0
Patch foraging total patch changes 6 sec1.42.22.2-1.51.51.5
Patch foraging time to switch 0 sec1.73.53.61.8-1.9-1.9
Patch foraging water rate 0 sec0.61.21.2-1.01.11.1
Patch foraging water rate 12 sec2.14.34.3-2.12.12.1
Patch foraging water rate 18 sec1.32.12.2-1.51.41.4
Patch foraging water rate 24 sec2.94.04.2-1.92.02.0
Patch foraging water rate 6 sec0.00.00.0-0.10.10.1
Seeking ratio, delayed vs. immediate footshock0.10.10.10.2-0.3-0.3
Distance traveled before self-admin2.43.13.2-1.71.81.8
Distance traveled after self-admin0.00.00.0-0.10.20.2
Extensor digitorum longus weight0.20.70.9-1.00.80.8
Bone: elastic displacement0.00.00.1-0.20.20.2
Bone: elastic work0.30.40.5-0.70.60.6
Bone: endosteal estimation2.14.54.62.1-2.1-2.1
Bone: endosteal perimeter2.14.44.52.1-2.1-2.1
Epididymis fat weight6.622.624.9-5.04.64.6
Delta time in closed arm before/after self-admin0.40.30.4-0.70.50.5
Delta time in open arm before/after self-admin0.10.10.10.4-0.3-0.3
Diff in mean of infusions in LGA sessions0.00.00.00.1-0.2-0.2
Delay discount exponential model param1.01.11.2-1.11.01.0
Extinction: sum of active levers before priming0.91.01.11.0-1.0-1.0
Active lever presses in extinction session 60.10.10.2-0.40.20.2
Bone: final force0.00.00.0-0.00.10.1
Bone: final moment0.00.00.0-0.00.10.1
Food consumed during 24 hour testing period0.00.00.00.10.20.2
Glucose3.55.65.6-2.32.42.4
Heart weight0.50.80.9-1.00.90.9
Delay discount hyperbolic model param1.11.21.3-1.11.11.1
Intermittent access intake day 1-15 change0.30.70.80.9-0.8-0.8
Intermittent access intake escalation0.40.81.11.0-0.8-0.8
Intermittent access intake escalation 21.92.22.61.6-1.4-1.4
Intermitt. access day 1 inactive lever presses0.20.70.7-0.80.80.8
Intermitt. access day 15 inactive lever presses0.40.70.8-0.90.80.8
Intermitt. access escalation Index0.10.20.2-0.40.50.5
Intermittent access day 1 total infusions0.40.60.6-0.70.80.8
Intermittent access day 15 total infusions0.00.00.00.20.10.1
Intermittent access terminal intake (last 3 days)0.10.10.20.4-0.2-0.2
Intermittent access total infusions0.00.00.00.10.10.1
Intermittent access day 1 locomotion1.31.61.8-1.31.21.2
Intermittent access day 15 total locomotion0.00.00.0-0.20.20.2
Intermittent access total locomotion0.00.10.1-0.20.20.2
Intermittent access standard deviation0.51.01.31.1-0.9-0.9
Left kidney weight1.04.54.5-2.12.12.1
Right kidney weight1.35.95.9-2.42.42.4
Cocaine induced anxiety0.00.00.0-0.00.20.2
Post-drug Anxiety0.20.20.30.6-0.4-0.4
Baseline Anxiety2.02.32.51.4-1.6-1.6
Tail length0.72.82.8-1.61.71.7
Length with tail0.31.21.3-1.01.11.1
Length without tail0.30.90.9-0.91.01.0
Times rat made contact with spout1.11.21.4-1.01.21.2
Lifetime Intake0.10.10.10.4-0.2-0.2
Liver weight, left0.30.50.7-0.50.80.8
Liver weight, right1.01.71.9-1.21.41.4
Locomotor activity0.81.31.4-1.21.11.1
Locomotor testing distance1.01.71.9-1.41.31.3
Locomotor testing rearing0.40.91.1-1.00.90.9
Locomotion in novel chamber0.00.10.1-0.0-0.3-0.3
Locomotion in novel chamber post-restriction3.25.25.42.2-2.3-2.3
Fecal boli incidents, locomotor time 10.10.10.10.3-0.2-0.2
Change in fecal boli incidents, locomotor task0.50.50.50.6-0.7-0.7
Time >=10cm from walls, locomotor time 10.00.00.0-0.0-0.0-0.0
Bouts of movement, locomotor time 10.10.10.2-0.50.30.3
Total resting periods, locomotor time 10.10.10.1-0.40.20.2
Rest time, locomotor task time 10.30.40.50.5-0.7-0.7
Distance moved, locomotor task time 10.81.21.3-0.91.11.1
Vertical activity count, locomotor time 10.20.40.5-0.50.70.7
Time >=10cm from walls, locomotor time 20.00.00.1-0.30.10.1
Bouts of movement, locomotor time 20.30.40.5-0.60.70.7
Total resting periods, locomotor time 20.20.30.4-0.50.60.6
Rest time, locomotor task time 20.20.20.30.5-0.5-0.5
Distance moved, locomotor task time 20.00.00.0-0.0-0.0-0.0
Vertical activity count, locomotor time 20.70.90.91.0-1.0-1.0
Light reinforcement 10.00.10.1-0.30.30.3
Light reinforcement 20.20.20.3-0.50.50.5
Bone: marrow area2.14.64.72.2-2.1-2.1
Bone: maximum diameter1.63.13.11.7-1.8-1.8
Bone: maximum force0.00.00.00.1-0.1-0.1
Bone: maximum moment0.00.00.00.0-0.0-0.0
Mean time between licks in bursts0.61.51.51.2-1.2-1.2
Mean num. licks in bursts0.00.00.00.10.10.1
Cd content in liver1.01.11.11.0-1.1-1.1
Co content in liver0.50.60.6-0.80.80.8
Cu content in liver0.50.60.70.7-0.8-0.8
Fe content in liver0.81.01.0-1.01.01.0
K content in liver0.20.20.20.5-0.5-0.5
Mg content in liver0.10.10.2-0.40.40.4
Mn content in liver0.10.10.20.4-0.3-0.3
Na content in liver0.70.70.9-0.90.80.8
Rb content in liver2.42.82.91.7-1.7-1.7
Se content in liver0.10.10.1-0.30.20.2
Sr content in liver0.00.00.0-0.10.10.1
Zn content in liver0.20.20.20.4-0.5-0.5
Bone: minimum diameter1.83.43.51.9-1.8-1.8
Time in familiar zone, hab. session 12.72.62.7-1.61.61.6
Time in novel zone, hab. session 11.71.71.91.4-1.3-1.3
Total zone transitions, hab. session 11.11.51.6-1.21.31.3
Total locomotion distance, hab. session 11.31.92.0-1.31.41.4
Locomotion velocity, hab. session 10.91.31.4-1.11.21.2
Time in familiar zone, hab. session 20.00.00.0-0.10.20.2
Time in novel zone, hab. session 20.20.20.2-0.40.40.4
Total zone transitions, hab. session 20.10.10.1-0.30.30.3
Total locomotion distance, hab. session 20.30.30.4-0.60.60.6
Locomotion velocity, hab. session 20.00.10.1-0.20.30.3
Novel to familiar place preference ratio0.10.10.1-0.20.30.3
Novelty place preference0.20.20.2-0.40.40.4
Time in novel zone, NPP test0.30.30.4-0.50.60.6
Total zone transitions, NPP test0.81.11.2-1.01.11.1
Total locomotion distance, NPP test0.81.01.1-0.91.01.0
Locomotion velocity, NPP test0.60.80.9-0.80.90.9
Intraocular pressure0.00.00.0-0.1-0.1-0.1
Delta distance traveled before/after self-admin0.80.91.11.0-0.9-0.9
Delta ambulatory time before/after self-admin1.31.61.91.4-1.2-1.2
Parametrial fat weight6.114.414.9-3.93.83.8
Pavlov. Cond. lever latency0.30.40.40.6-0.6-0.6
Pavlov. Cond. magazine entry latency0.20.30.30.5-0.5-0.5
Pavlov. Cond. change in total contacts0.10.10.1-0.30.30.3
Pavlov. Cond. index score0.00.00.0-0.10.20.2
Pavlov. Cond. latency score0.00.00.00.00.00.0
Pavlov. Cond. lever contacts0.70.90.9-0.90.90.9
Pavlov. Cond. magazine entry number0.00.00.0-0.0-0.0-0.0
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.30.20.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.20.20.2
Pavlov. Cond. response bias0.30.30.3-0.60.60.6
Pavlov. Cond. lever latency0.10.10.10.2-0.3-0.3
Pavlov. Cond. magazine entry latency0.70.80.8-0.90.90.9
Pavlov. Cond. change in total contacts0.61.01.1-0.91.11.1
Pavlov. Cond. index score0.81.11.1-1.01.11.1
Pavlov. Cond. latency score0.91.21.3-1.11.11.1
Pavlov. Cond. lever contacts0.20.30.3-0.40.50.5
Pavlov. Cond. magazine entry number0.20.30.30.5-0.5-0.5
Pavlov. Cond. intertrial magazine entries0.10.20.20.3-0.5-0.5
Pavlov. Cond. lever-magazine prob. diff.1.11.41.5-1.11.21.2
Pavlov. Cond. response bias0.00.00.00.00.10.1
Time in closed arm before self-admin0.10.10.2-0.30.40.4
Time in closed arm after self-admin3.13.43.4-1.81.81.8
Time in open arm before self-admin0.30.30.4-0.70.50.5
Time in open arm after self-admin0.00.00.00.2-0.2-0.2
Bone: periosteal estimation1.73.63.61.9-1.9-1.9
Bone: periosteal perimeter0.61.11.11.0-1.0-1.0
Bone: post-yield work0.10.10.1-0.40.30.3
Progressive ratio test 1 active lever presses0.81.01.1-1.01.01.0
Progressive ratio test 1 breakpoint0.60.80.8-0.90.90.9
Progressive ratio test 1 inactive lever presses1.01.51.6-1.11.31.3
Progressive ratio test 2 active lever presses1.61.81.9-1.31.41.4
Progressive ratio test 2 breakpoint2.02.32.3-1.51.51.5
Progressive ratio test 2 inactive lever presses0.50.91.0-0.81.01.0
Incentive Sensitization - Responses2.94.14.2-1.92.02.0
Incentive Sensitization - Breakpoint2.93.83.9-1.92.02.0
Sum of active levers in priming session hrs 5-67.26.76.72.6-2.6-2.6
Progressive ratio0.40.60.60.8-0.7-0.7
Food seeking constrained by brief footshock0.60.70.80.9-0.8-0.8
Seeking ratio, punishment vs. effort0.10.10.10.3-0.3-0.3
Retroperitoneal fat weight3.916.818.2-4.34.04.0
Reaction time number correct0.10.20.20.4-0.4-0.4
Reaction time mean minus median0.00.00.00.00.00.0
Reaction time mean minus median AUC0.10.20.20.4-0.4-0.4
Reaction time num false alarms0.00.00.00.1-0.0-0.0
Reaction time num false alarms AUC0.00.00.1-0.10.20.2
Reaction time trials correct on left0.10.20.20.4-0.4-0.4
Reaction time trials on left0.10.10.10.3-0.4-0.4
Reaction time mean0.60.91.0-0.91.01.0
Reaction time mean AUC0.40.70.7-0.80.90.9
Median of all reaction times0.91.31.3-1.11.11.1
Reaction time omissions0.71.01.1-1.01.01.0
Reaction time false alarm rate0.10.10.1-0.20.30.3
Reaction time premature initiation rate0.30.40.5-0.70.60.6
Reaction time premature initiations0.10.20.3-0.60.40.4
Std. dev. reaction times0.20.50.5-0.70.70.7
Reaction time trials completed0.10.10.10.3-0.4-0.4
Reaction time trials AUC0.00.10.10.2-0.2-0.2
Run reversals in cocaine runway, females0.40.40.60.8-0.6-0.6
Run reversals in cocaine runway, males0.60.60.6-0.80.80.8
Latency to leave start box in cocaine runway0.70.81.0-0.71.01.0
Latency to leave start box in cocaine runway, F0.20.20.3-0.20.50.5
Latency to leave start box in cocaine runway, M1.91.81.8-1.31.31.3
Std. dev. time between licks in bursts0.91.21.31.1-1.1-1.1
Total sessions with >9 infusions0.10.10.10.4-0.2-0.2
Short access day 1 total inactive lever presses0.50.70.8-0.70.90.9
Short access day 10 total inactive lever presses0.71.81.8-1.31.41.4
Short access day 1 total infusions0.20.30.4-0.50.60.6
Short access day 10 total infusions0.20.20.20.5-0.4-0.4
Short access total infusions0.20.30.40.6-0.5-0.5
Short access day 1 locomotion0.00.00.00.2-0.1-0.1
Short access day 10 total locomotion0.00.00.0-0.1-0.1-0.1
Short access total locomotion0.10.10.10.2-0.3-0.3
One hour access (0.3 mA shock)0.00.00.00.1-0.1-0.1
Compulsive drug intake0.00.00.10.1-0.2-0.2
One hour access (shock baseline)0.00.00.10.00.30.3
Social response proportion0.20.20.30.6-0.3-0.3
Social responses0.10.10.10.2-0.3-0.3
Social time0.00.00.0-0.10.10.1
Soleus weight0.10.30.5-0.70.50.5
Bone: stiffness0.00.00.0-0.00.10.1
Tibialis anterior weight0.51.61.8-1.31.21.2
Time to tail flick, vehicle, before self-admin0.20.20.20.3-0.5-0.5
Time to tail flick, vehicle, after self-admin0.71.01.11.1-0.9-0.9
Time to tail flick, test, before self-admin4.04.24.42.1-2.0-2.0
Time to tail flick, test, after self-admin0.00.00.00.1-0.1-0.1
Delta time to tail flick, vehicle, before/after SA0.30.20.30.6-0.4-0.4
Delta time to tail flick, test, before/after SA4.34.54.6-2.12.12.1
Tibia length0.10.30.3-0.40.60.6
Ambulatory time before self-admin4.26.36.4-2.52.52.5
Ambulatory time after self-admin0.91.11.2-1.01.11.1
Bone: tissue strength0.70.80.9-1.00.80.8
Total heroin consumption0.20.30.30.5-0.5-0.5
Bone: trabecular number1.22.02.01.4-1.4-1.4
Bone: trabecular spacing1.82.32.5-1.41.61.6
Bone: trabecular thickness6.78.48.52.9-2.9-2.9
Bone: trabecular tissue density0.00.00.00.10.00.0
Water consumed over 24 hours1.11.51.6-1.11.31.3
Number of responses in last shaping day0.30.40.4-0.50.70.7