Btnl3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression Btnl3 0.23 0.11 9.3e-04 0.09 0.03 0.09 0.12 3.2e-03 7.6e-02 4.1e-03 8.4e-04
2 Brain gene expression Btnl3 0.28 0.1 0.0e+00 0.24 0.24 0.24 0.26 3.5e-22 3.3e-22 5.7e-22 8.7e-24
3 pVTA gene expression Btnl3 0.59 0.1 0.0e+00 0.49 0.49 0.52 0.52 2.8e-44 7.0e-45 5.9e-48 4.9e-48
4 IL gene expression Btnl3 0.63 0.13 1.1e-08 0.2 0.15 0.22 0.16 1.8e-05 2.0e-04 5.6e-06 1.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.40.71.71.30.90.4-0.0
Area under the delay curve0.00.10.10.3-0.00.2-0.4
BMI with tail2.37.910.7-3.2-2.7-3.31.9
BMI without tail1.57.78.7-2.9-2.9-2.82.5
Body weight2.912.716.2-4.0-3.9-3.92.0
Weight adjusted by age0.41.22.0-1.3-1.4-1.1-0.0
Bone surface0.10.30.80.40.30.1-0.9
Bone volume0.00.00.10.30.1-0.2-0.1
Breakpoint value in progressive ratio session0.10.30.30.40.60.5-0.5
Number of licking bursts0.31.01.80.31.31.1-1.0
Context. condit. distance diff. score5.36.58.02.62.82.3-2.3
Locomotion velocity, session 13.13.54.02.01.71.9-1.9
Locomotion distance, session 10.60.81.51.21.00.8-0.1
Locomotion velocity, session 20.80.91.11.01.01.0-0.8
Locomotion distance, session 20.70.91.41.01.20.8-0.9
Locomotion velocity, session 30.30.41.4-0.2-0.2-0.11.2
Locomotion distance, session 31.21.42.51.61.31.2-0.0
Stereotopy head waving bouts, day 30.30.40.9-1.0-0.4-0.2-0.5
Stereotopy head waving duration, day 30.30.41.2-1.1-0.5-0.1-0.3
Locomotion velocity, session 72.83.14.92.22.01.4-1.3
Locomotion distance, session 73.94.98.22.92.42.1-1.2
Stereotopy head waving bouts, day 70.20.20.4-0.30.10.70.4
Stereotopy head waving duration, day 70.30.30.8-0.9-0.40.10.6
Locomotion velocity, session 83.84.57.51.62.02.0-2.7
Locomotion distance, session 84.46.48.62.72.92.1-2.4
Degree of sensitization distance0.60.71.70.50.60.5-1.3
Degree of sensitization stereotypy0.30.41.00.30.51.00.3
Conditioned locomotion0.60.81.3-1.1-0.8-1.0-0.3
Cocaine response after cond. corrected0.10.10.2-0.40.3-0.5-0.3
Cocaine response after cond. not corrected0.20.30.8-0.9-0.2-0.4-0.4
Cocaine response before conditioning0.80.92.0-1.2-1.4-0.40.2
Saline control response4.25.88.0-2.3-2.8-2.22.3
Bone: connectivity density0.30.51.11.00.70.2-0.6
Bone: cortical apparent density1.62.63.7-1.6-1.8-1.90.9
Bone: cortical area0.10.10.30.0-0.6-0.40.1
Bone: cortical porosity1.21.32.51.30.91.6-0.1
Bone: cortical porosity1.61.83.21.51.21.8-0.6
Bone: cortical thickness1.11.82.4-0.6-1.5-1.41.6
Bone: cortical thickness2.32.83.7-1.6-1.9-1.91.2
Bone: cortical tissue density1.52.43.4-1.6-1.7-1.80.7
Condit. Reinf. active minus inactive responses1.31.52.31.51.11.4-0.8
Condit. Reinf. active-inactive response ratio0.10.10.40.1-0.3-0.10.6
Condit. Reinf. active responses0.91.12.41.50.91.0-0.5
Condit. Reinf. inactive responses0.60.72.11.50.80.50.0
Incentive salience index mean2.93.74.72.21.91.9-1.8
Condit. Reinf. lever presses3.24.85.72.32.31.8-2.4
Condit. Reinf. active minus inactive responses0.10.10.4-0.1-0.6-0.20.3
Condit. Reinf. active-inactive response ratio0.00.10.2-0.0-0.4-0.0-0.3
Condit. Reinf. active responses0.00.10.10.1-0.3-0.00.4
Condit. Reinf. inactive responses0.20.30.6-0.5-0.5-0.50.8
Condit. Reinf. lever presses0.60.81.81.30.70.90.1
Condit. Reinf. lever reinforcers received0.00.10.10.4-0.10.30.2
Conditioned reinforcement - actives0.00.00.10.40.0-0.20.1
Conditioned reinforcement - inactives0.00.00.0-0.20.10.0-0.0
Conditioned locomotion0.20.30.60.80.30.3-0.6
Patch foraging indifference point 0 sec0.92.73.7-1.6-1.9-1.71.2
Patch foraging indifference point AUC0.00.00.10.1-0.10.3-0.3
Delay disc. indifference point, 0s delay0.60.61.20.60.80.6-1.1
Delay disc. indifference point, 16s delay0.10.10.2-0.0-0.4-0.20.3
Delay disc. indifference point, 2s delay0.60.61.30.50.50.8-1.1
Delay disc. indifference point, 24s delay0.00.00.1-0.0-0.40.10.0
Delay disc. indifference point, 4s delay0.20.20.4-0.7-0.6-0.3-0.1
Delay disc. indifference point, 8s delay0.20.30.60.80.20.4-0.5
Indifference point function ln k0.30.81.10.60.81.0-1.0
Indifference point function log k0.30.81.10.60.81.0-1.0
Patch foraging total patch changes 0 sec1.02.94.0-1.7-2.0-1.81.3
Patch foraging total patch changes 12 sec1.41.82.8-1.4-1.7-1.40.8
Patch foraging total patch changes 18 sec1.43.34.3-1.7-1.8-2.11.7
Patch foraging total patch changes 24 sec0.20.51.3-0.0-0.6-0.71.1
Patch foraging total patch changes 6 sec1.32.22.9-1.4-1.7-1.41.3
Patch foraging time to switch 0 sec0.52.13.3-1.4-1.2-1.81.3
Patch foraging water rate 0 sec0.10.20.5-0.7-0.5-0.3-0.1
Patch foraging water rate 12 sec0.00.10.5-0.2-0.0-0.20.7
Patch foraging water rate 18 sec0.20.50.8-0.9-0.6-0.60.7
Patch foraging water rate 24 sec0.40.61.0-0.7-0.6-0.71.0
Patch foraging water rate 6 sec0.30.50.9-0.7-0.5-0.50.9
Seeking ratio, delayed vs. immediate footshock1.31.93.2-0.9-1.8-1.01.6
Distance traveled before self-admin0.10.30.9-0.2-0.4-0.90.1
Distance traveled after self-admin0.91.52.2-1.5-1.3-1.20.8
Extensor digitorum longus weight0.00.10.20.10.30.1-0.5
Bone: elastic displacement0.20.20.40.70.20.50.3
Bone: elastic work0.00.00.10.0-0.4-0.1-0.2
Bone: endosteal estimation0.41.02.1-1.4-0.7-0.4-1.2
Bone: endosteal perimeter0.20.61.90.20.50.5-1.4
Epididymis fat weight4.422.327.4-4.2-4.5-5.24.9
Delta time in closed arm before/after self-admin0.20.20.4-0.3-0.2-0.5-0.6
Delta time in open arm before/after self-admin0.00.10.1-0.2-0.30.00.3
Diff in mean of infusions in LGA sessions0.71.22.01.41.30.8-0.7
Delay discount exponential model param0.00.10.1-0.30.0-0.30.3
Extinction: sum of active levers before priming0.71.12.10.81.00.9-1.4
Active lever presses in extinction session 60.20.20.60.80.40.2-0.3
Bone: final force2.94.76.1-2.2-2.4-2.51.4
Bone: final moment2.13.44.4-1.9-2.0-2.11.3
Food consumed during 24 hour testing period0.40.81.7-1.3-0.7-0.9-0.2
Glucose2.74.35.01.72.22.2-2.1
Heart weight0.30.51.4-0.4-1.2-0.40.2
Delay discount hyperbolic model param0.10.10.1-0.3-0.0-0.40.3
Intermittent access intake day 1-15 change0.00.20.5-0.7-0.2-0.10.5
Intermittent access intake escalation0.10.61.1-0.8-0.6-0.41.1
Intermittent access intake escalation 20.10.10.2-0.30.30.4-0.2
Intermitt. access day 1 inactive lever presses0.00.60.9-0.90.70.3-0.9
Intermitt. access day 15 inactive lever presses0.00.20.5-0.7-0.4-0.4-0.1
Intermitt. access escalation Index0.31.01.51.21.10.9-0.8
Intermittent access day 1 total infusions1.02.94.52.11.71.6-1.4
Intermittent access day 15 total infusions0.10.20.40.60.50.60.1
Intermittent access terminal intake (last 3 days)0.10.20.40.60.30.5-0.1
Intermittent access total infusions0.50.50.91.00.70.8-0.3
Intermittent access day 1 locomotion0.10.20.80.90.2-0.1-0.0
Intermittent access day 15 total locomotion0.20.81.3-0.5-1.2-1.10.7
Intermittent access total locomotion0.20.20.40.0-0.6-0.60.5
Intermittent access standard deviation0.63.04.8-2.2-1.7-1.61.3
Left kidney weight1.612.515.6-3.5-3.9-3.82.8
Right kidney weight1.812.815.5-3.6-3.9-3.92.8
Cocaine induced anxiety0.00.10.2-0.10.2-0.1-0.4
Post-drug Anxiety0.10.20.3-0.4-0.4-0.60.2
Baseline Anxiety0.10.10.2-0.3-0.4-0.3-0.0
Tail length0.21.12.0-1.4-1.4-0.60.4
Length with tail0.62.84.6-2.1-2.1-1.50.1
Length without tail1.15.89.4-3.1-2.5-2.8-0.0
Times rat made contact with spout0.40.41.20.50.30.51.1
Lifetime Intake0.40.61.11.10.70.7-0.3
Liver weight, left0.30.51.4-1.2-0.5-0.7-0.2
Liver weight, right0.61.14.2-0.20.20.2-2.1
Locomotor activity0.40.60.9-1.0-0.6-0.21.0
Locomotor testing distance0.20.40.8-0.9-0.4-0.30.6
Locomotor testing rearing0.20.81.6-1.3-0.8-0.80.3
Locomotion in novel chamber0.20.20.5-0.7-0.3-0.30.5
Locomotion in novel chamber post-restriction0.61.72.6-1.0-1.6-1.50.9
Fecal boli incidents, locomotor time 10.10.20.30.30.50.1-0.6
Change in fecal boli incidents, locomotor task0.30.30.7-0.8-0.4-0.1-0.7
Time >=10cm from walls, locomotor time 11.51.92.8-1.7-1.4-1.7-0.3
Bouts of movement, locomotor time 10.10.20.30.50.30.30.5
Total resting periods, locomotor time 10.20.20.50.70.40.40.2
Rest time, locomotor task time 10.20.40.60.50.70.8-0.4
Distance moved, locomotor task time 10.30.91.2-1.0-1.1-0.90.5
Vertical activity count, locomotor time 10.32.22.9-1.3-1.7-1.61.2
Time >=10cm from walls, locomotor time 20.20.60.8-0.9-0.8-0.8-0.6
Bouts of movement, locomotor time 20.00.10.10.10.00.40.4
Total resting periods, locomotor time 20.10.40.80.70.40.9-0.1
Rest time, locomotor task time 20.40.71.20.41.00.6-1.1
Distance moved, locomotor task time 21.11.52.0-1.1-1.4-1.30.9
Vertical activity count, locomotor time 20.51.11.6-0.9-1.3-1.30.6
Light reinforcement 10.52.54.2-2.1-1.1-1.61.4
Light reinforcement 20.41.02.5-1.6-0.6-1.00.5
Bone: marrow area0.51.22.6-1.6-0.9-0.5-1.1
Bone: maximum diameter0.71.42.40.91.01.1-1.6
Bone: maximum force1.02.03.1-1.4-1.6-1.70.4
Bone: maximum moment0.61.11.8-1.1-1.2-1.30.3
Mean time between licks in bursts0.63.55.21.71.71.7-2.3
Mean num. licks in bursts0.41.12.5-0.1-1.1-0.81.6
Cd content in liver0.20.20.5-0.4-0.1-0.70.4
Co content in liver2.52.93.2-1.7-1.8-1.81.5
Cu content in liver0.60.72.20.70.20.31.5
Fe content in liver1.11.41.9-1.2-1.0-1.21.4
K content in liver0.50.40.80.80.90.60.2
Mg content in liver1.71.92.71.31.61.4-1.1
Mn content in liver1.61.83.00.81.51.1-1.7
Na content in liver0.30.41.5-0.0-0.20.01.2
Rb content in liver0.10.10.20.30.50.1-0.1
Se content in liver2.63.15.21.51.82.3-1.2
Sr content in liver0.10.10.2-0.5-0.1-0.1-0.0
Zn content in liver0.20.20.30.20.50.3-0.6
Bone: minimum diameter0.10.20.90.30.10.1-0.9
Time in familiar zone, hab. session 10.50.61.21.10.30.41.0
Time in novel zone, hab. session 10.50.61.7-1.3-0.4-0.4-0.6
Total zone transitions, hab. session 10.20.30.60.60.80.6-0.1
Total locomotion distance, hab. session 10.20.30.60.80.60.5-0.1
Locomotion velocity, hab. session 10.10.20.50.70.40.40.0
Time in familiar zone, hab. session 21.11.22.7-0.6-0.9-1.01.6
Time in novel zone, hab. session 20.30.30.8-0.10.40.6-0.9
Total zone transitions, hab. session 20.10.10.3-0.1-0.0-0.50.6
Total locomotion distance, hab. session 20.20.20.50.50.70.10.2
Locomotion velocity, hab. session 20.40.61.11.01.10.4-0.1
Novel to familiar place preference ratio0.30.40.60.20.70.8-0.5
Novelty place preference0.30.40.70.20.70.8-0.6
Time in novel zone, NPP test0.30.30.60.10.60.8-0.5
Total zone transitions, NPP test1.11.72.81.41.71.1-0.8
Total locomotion distance, NPP test0.81.12.01.21.40.7-0.6
Locomotion velocity, NPP test1.11.52.81.51.70.9-0.6
Intraocular pressure0.30.51.10.5-0.6-0.61.1
Delta distance traveled before/after self-admin0.50.61.1-1.1-0.9-0.00.7
Delta ambulatory time before/after self-admin0.20.40.8-0.9-0.70.00.5
Parametrial fat weight2.86.78.8-3.0-2.4-2.82.1
Pavlov. Cond. lever latency8.010.110.7-3.3-3.2-3.23.0
Pavlov. Cond. magazine entry latency3.74.76.12.22.12.5-1.8
Pavlov. Cond. change in total contacts2.02.22.81.71.31.6-1.3
Pavlov. Cond. index score6.48.29.03.02.92.9-2.6
Pavlov. Cond. latency score6.88.69.63.12.93.0-2.7
Pavlov. Cond. lever contacts6.47.88.22.82.92.6-2.9
Pavlov. Cond. magazine entry number2.53.24.0-1.9-1.8-2.01.4
Pavlov. Cond. intertrial magazine entries0.70.81.0-0.8-0.8-1.00.9
Pavlov. Cond. lever-magazine prob. diff.6.48.08.83.02.82.9-2.6
Pavlov. Cond. response bias4.35.46.02.32.42.4-2.1
Pavlov. Cond. lever latency0.20.30.8-0.5-0.1-0.3-0.9
Pavlov. Cond. magazine entry latency0.50.80.90.81.00.9-0.8
Pavlov. Cond. change in total contacts0.10.20.30.60.00.40.4
Pavlov. Cond. index score0.20.40.70.80.60.7-0.0
Pavlov. Cond. latency score0.10.20.40.60.40.50.2
Pavlov. Cond. lever contacts0.20.20.90.3-0.00.20.9
Pavlov. Cond. magazine entry number0.10.10.2-0.4-0.4-0.30.2
Pavlov. Cond. intertrial magazine entries0.30.60.70.80.70.9-0.8
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.80.50.60.0
Pavlov. Cond. response bias0.30.40.80.90.60.70.2
Time in closed arm before self-admin0.10.10.3-0.60.10.3-0.1
Time in closed arm after self-admin0.00.00.10.20.20.0-0.2
Time in open arm before self-admin1.11.31.91.21.11.4-0.9
Time in open arm after self-admin0.20.20.60.10.30.7-0.5
Bone: periosteal estimation0.30.81.3-1.1-1.0-0.7-0.5
Bone: periosteal perimeter0.00.10.30.1-0.00.2-0.6
Bone: post-yield work0.30.51.9-0.10.40.1-1.4
Progressive ratio test 1 active lever presses0.20.40.50.70.70.6-0.6
Progressive ratio test 1 breakpoint0.20.40.50.60.70.6-0.6
Progressive ratio test 1 inactive lever presses0.20.40.7-0.7-0.4-0.80.6
Progressive ratio test 2 active lever presses0.20.20.50.50.70.5-0.2
Progressive ratio test 2 breakpoint0.20.30.40.50.70.5-0.2
Progressive ratio test 2 inactive lever presses0.51.62.20.81.41.2-1.5
Incentive Sensitization - Responses0.10.20.40.30.60.6-0.2
Incentive Sensitization - Breakpoint0.10.10.30.20.50.5-0.1
Sum of active levers in priming session hrs 5-60.60.50.80.80.70.9-0.4
Progressive ratio2.88.310.1-3.0-3.2-2.92.5
Food seeking constrained by brief footshock0.00.10.1-0.2-0.30.00.3
Seeking ratio, punishment vs. effort2.55.56.62.32.62.5-2.0
Retroperitoneal fat weight0.10.61.2-0.9-0.6-1.10.4
Reaction time number correct0.82.74.0-2.0-1.7-1.71.2
Reaction time mean minus median0.53.56.62.61.91.9-0.5
Reaction time mean minus median AUC0.85.09.13.02.32.2-1.0
Reaction time num false alarms0.10.10.20.40.20.4-0.4
Reaction time num false alarms AUC0.00.10.10.3-0.00.3-0.2
Reaction time trials correct on left0.82.74.0-2.0-1.7-1.71.2
Reaction time trials on left0.82.63.7-1.9-1.6-1.61.1
Reaction time mean1.83.94.92.22.11.8-1.9
Reaction time mean AUC1.63.95.22.32.01.7-1.8
Median of all reaction times1.72.63.61.61.61.3-1.9
Reaction time omissions1.11.72.71.71.51.1-0.9
Reaction time false alarm rate1.11.62.31.51.01.4-1.0
Reaction time premature initiation rate0.20.41.1-1.0-0.5-0.4-0.0
Reaction time premature initiations0.82.34.5-2.1-1.5-1.40.6
Std. dev. reaction times1.44.67.22.72.22.2-1.2
Reaction time trials completed0.82.63.7-1.9-1.6-1.61.1
Reaction time trials AUC0.82.74.0-2.0-1.6-1.71.2
Run reversals in cocaine runway, females0.10.10.3-0.3-0.2-0.40.5
Run reversals in cocaine runway, males1.01.11.60.71.31.1-1.0
Latency to leave start box in cocaine runway0.71.02.10.61.00.8-1.4
Latency to leave start box in cocaine runway, F0.60.81.30.80.80.7-1.2
Latency to leave start box in cocaine runway, M0.20.20.5-0.30.20.0-0.7
Std. dev. time between licks in bursts1.22.34.91.11.11.3-2.2
Total sessions with >9 infusions0.50.71.81.40.50.7-0.3
Short access day 1 total inactive lever presses0.91.92.81.11.31.3-1.7
Short access day 10 total inactive lever presses0.00.10.4-0.60.3-0.10.2
Short access day 1 total infusions1.01.92.51.61.21.4-1.3
Short access day 10 total infusions0.30.51.71.30.50.5-0.1
Short access total infusions1.01.43.11.81.01.0-0.7
Short access day 1 locomotion0.71.22.31.51.00.8-0.8
Short access day 10 total locomotion0.20.71.0-1.0-1.0-0.9-0.1
Short access total locomotion0.10.20.60.50.0-0.0-0.8
One hour access (0.3 mA shock)0.70.81.70.81.31.0-0.1
Compulsive drug intake0.40.61.2-0.11.00.4-1.1
One hour access (shock baseline)0.10.30.40.60.20.30.7
Social response proportion0.20.30.9-0.5-0.2-0.0-0.9
Social responses0.10.10.2-0.4-0.4-0.20.3
Social time0.81.31.81.01.31.0-1.3
Soleus weight0.72.06.00.21.10.8-2.5
Bone: stiffness1.12.03.0-1.4-1.5-1.70.8
Tibialis anterior weight0.30.91.2-0.8-1.0-1.11.0
Time to tail flick, vehicle, before self-admin0.50.61.00.3-0.5-1.01.0
Time to tail flick, vehicle, after self-admin0.51.01.71.30.81.0-0.7
Time to tail flick, test, before self-admin0.50.62.0-0.4-0.4-0.31.4
Time to tail flick, test, after self-admin0.90.91.60.81.21.3-0.2
Delta time to tail flick, vehicle, before/after SA1.71.82.71.31.41.6-1.0
Delta time to tail flick, test, before/after SA0.20.30.50.50.70.3-0.5
Tibia length0.71.84.1-2.0-1.1-1.1-0.8
Ambulatory time before self-admin0.00.10.10.30.1-0.3-0.1
Ambulatory time after self-admin0.30.50.7-0.8-0.8-0.60.4
Bone: tissue strength0.10.10.1-0.2-0.2-0.30.1
Total heroin consumption0.00.00.1-0.10.10.10.3
Bone: trabecular number0.40.81.81.31.00.40.3
Bone: trabecular spacing0.71.01.9-1.4-1.3-0.70.0
Bone: trabecular thickness0.10.10.30.60.4-0.10.2
Bone: trabecular tissue density0.10.20.4-0.10.30.6-0.3
Water consumed over 24 hours0.10.10.3-0.00.40.4-0.5
Number of responses in last shaping day1.01.33.30.40.61.2-1.8