Bcl2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Bcl2 0.24 0.11 4.3e-07 0.03 0.04 0.03 0 3.9e-04 7.0e-05 8.5e-04 1.7e-01
2 pVTA gene expression Bcl2 0.08 0.05 2.8e-03 0.01 0.02 0.02 0.02 5.4e-02 5.2e-03 5.4e-03 1.8e-02
3 NAcc mRNA stability Bcl2 0.16 0.09 6.1e-06 0.02 0.01 0.02 0.02 7.8e-04 8.5e-03 9.4e-04 8.0e-04
4 NAcc gene expression Bcl2 0.24 0.06 0.0e+00 0.11 0.1 0.11 0.11 3.8e-16 5.4e-15 2.3e-16 1.0e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.30.60.50.10.2
Area under the delay curve0.70.92.0-1.4-1.2-0.10.1
BMI with tail1.34.37.7-1.1-2.81.82.3
BMI without tail0.61.93.0-0.1-1.71.31.7
Body weight1.46.010.0-2.6-3.21.62.2
Weight adjusted by age2.03.04.8-0.9-1.42.22.1
Bone surface0.40.81.40.7-0.21.11.2
Bone volume0.10.20.40.60.40.20.4
Breakpoint value in progressive ratio session0.20.20.60.0-0.80.40.4
Number of licking bursts0.71.13.2-1.80.1-0.9-0.6
Context. condit. distance diff. score0.20.20.7-0.90.00.10.4
Locomotion velocity, session 10.91.01.5-0.4-1.01.21.1
Locomotion distance, session 10.70.92.9-1.7-0.2-0.6-0.4
Locomotion velocity, session 20.30.40.8-0.9-0.9-0.0-0.0
Locomotion distance, session 21.11.52.8-1.70.2-1.4-1.1
Locomotion velocity, session 30.10.10.20.50.3-0.1-0.0
Locomotion distance, session 30.50.50.60.8-0.40.70.8
Stereotopy head waving bouts, day 30.80.91.9-0.70.5-1.4-1.0
Stereotopy head waving duration, day 30.80.91.3-0.30.9-1.2-1.2
Locomotion velocity, session 70.40.51.01.00.80.50.2
Locomotion distance, session 70.00.00.1-0.10.3-0.2-0.2
Stereotopy head waving bouts, day 70.60.61.1-0.50.3-1.1-1.1
Stereotopy head waving duration, day 70.00.00.10.2-0.3-0.1-0.2
Locomotion velocity, session 81.92.33.7-0.81.9-1.5-1.6
Locomotion distance, session 80.71.01.7-1.30.7-1.1-0.8
Degree of sensitization distance0.60.61.0-0.40.6-1.0-1.0
Degree of sensitization stereotypy0.40.40.9-0.50.0-0.7-0.9
Conditioned locomotion0.60.72.3-1.5-0.40.40.2
Cocaine response after cond. corrected0.20.20.4-0.30.30.60.4
Cocaine response after cond. not corrected0.10.10.30.30.60.30.1
Cocaine response before conditioning0.81.01.51.00.8-1.2-0.9
Saline control response2.73.65.4-1.41.4-2.3-2.3
Bone: connectivity density0.20.30.80.40.90.30.5
Bone: cortical apparent density2.33.24.70.42.2-2.0-2.0
Bone: cortical area0.30.40.70.80.8-0.4-0.3
Bone: cortical porosity0.80.92.5-1.6-0.70.00.6
Bone: cortical porosity0.90.92.2-1.5-1.00.10.8
Bone: cortical thickness0.71.22.51.61.3-0.7-0.6
Bone: cortical thickness0.91.01.60.71.3-1.1-0.7
Bone: cortical tissue density2.22.94.10.22.0-1.9-2.0
Condit. Reinf. active minus inactive responses0.40.41.1-0.3-1.1-0.00.6
Condit. Reinf. active-inactive response ratio0.20.20.40.20.3-0.7-0.6
Condit. Reinf. active responses0.81.02.7-0.1-1.60.50.9
Condit. Reinf. inactive responses0.50.61.20.2-1.10.70.9
Incentive salience index mean0.40.61.7-0.2-1.30.10.7
Condit. Reinf. lever presses0.30.41.50.2-1.20.30.4
Condit. Reinf. active minus inactive responses3.95.17.50.2-2.72.62.4
Condit. Reinf. active-inactive response ratio3.94.56.4-0.9-2.52.52.1
Condit. Reinf. active responses4.76.611.3-0.2-3.42.62.9
Condit. Reinf. inactive responses1.11.42.50.7-1.40.81.6
Condit. Reinf. lever presses1.21.63.2-1.6-1.80.40.8
Condit. Reinf. lever reinforcers received3.95.510.3-0.6-3.22.22.5
Conditioned reinforcement - actives0.61.12.10.1-1.50.71.3
Conditioned reinforcement - inactives0.30.51.91.40.10.10.2
Conditioned locomotion0.20.20.40.7-0.00.10.6
Patch foraging indifference point 0 sec2.13.96.7-2.61.8-2.0-1.3
Patch foraging indifference point AUC0.10.10.30.1-0.6-0.2-0.3
Delay disc. indifference point, 0s delay1.11.23.4-1.80.2-1.0-0.5
Delay disc. indifference point, 16s delay1.82.05.8-0.6-2.40.81.1
Delay disc. indifference point, 2s delay1.21.32.7-1.60.9-1.0-1.0
Delay disc. indifference point, 24s delay0.40.40.8-0.6-0.9-0.7-0.2
Delay disc. indifference point, 4s delay2.12.26.9-2.6-0.7-1.0-0.7
Delay disc. indifference point, 8s delay0.10.10.3-0.5-0.3-0.3-0.3
Indifference point function ln k0.30.51.3-1.1-0.00.50.6
Indifference point function log k0.30.51.3-1.1-0.00.50.6
Patch foraging total patch changes 0 sec1.93.55.9-2.41.5-2.0-1.3
Patch foraging total patch changes 12 sec1.92.53.7-1.21.4-1.9-1.8
Patch foraging total patch changes 18 sec1.32.02.8-1.01.5-1.7-1.4
Patch foraging total patch changes 24 sec1.12.02.8-1.41.7-1.3-1.2
Patch foraging total patch changes 6 sec1.32.02.6-1.31.3-1.6-1.4
Patch foraging time to switch 0 sec0.10.30.50.70.4-0.3-0.7
Patch foraging water rate 0 sec0.10.30.7-0.90.6-0.20.1
Patch foraging water rate 12 sec0.10.20.3-0.50.40.50.3
Patch foraging water rate 18 sec0.10.10.30.20.50.4-0.0
Patch foraging water rate 24 sec0.71.03.6-1.9-0.60.00.2
Patch foraging water rate 6 sec0.30.51.1-0.21.0-0.6-0.7
Seeking ratio, delayed vs. immediate footshock0.00.00.00.00.20.10.2
Distance traveled before self-admin0.50.71.0-0.80.6-1.0-0.8
Distance traveled after self-admin2.02.44.0-0.62.0-1.6-1.7
Extensor digitorum longus weight0.31.03.0-0.60.3-1.7-0.9
Bone: elastic displacement0.40.51.31.20.10.60.4
Bone: elastic work1.21.62.71.41.6-0.8-1.0
Bone: endosteal estimation0.20.51.7-1.3-0.40.2-0.0
Bone: endosteal perimeter0.30.72.2-1.5-0.30.40.4
Epididymis fat weight2.17.210.91.1-2.93.32.9
Delta time in closed arm before/after self-admin0.10.10.2-0.40.0-0.20.0
Delta time in open arm before/after self-admin0.60.61.3-1.1-0.2-0.8-0.7
Diff in mean of infusions in LGA sessions0.40.51.6-0.11.3-0.2-0.5
Delay discount exponential model param0.91.02.81.71.10.20.0
Extinction: sum of active levers before priming0.70.72.31.5-0.30.60.4
Active lever presses in extinction session 60.30.30.60.80.4-0.2-0.5
Bone: final force0.00.00.1-0.10.1-0.10.2
Bone: final moment0.00.10.1-0.2-0.10.10.4
Food consumed during 24 hour testing period0.40.50.9-1.0-0.9-0.40.4
Glucose3.35.19.3-1.8-3.11.92.1
Heart weight0.20.30.7-0.6-0.80.40.3
Delay discount hyperbolic model param0.70.82.41.50.80.30.2
Intermittent access intake day 1-15 change0.71.42.8-0.0-0.41.71.6
Intermittent access intake escalation0.40.91.9-0.10.11.41.3
Intermittent access intake escalation 20.50.61.0-0.50.21.01.0
Intermitt. access day 1 inactive lever presses0.00.20.5-0.3-0.0-0.7-0.4
Intermitt. access day 15 inactive lever presses0.10.10.20.40.1-0.4-0.3
Intermitt. access escalation Index0.40.61.2-1.1-0.1-0.8-0.7
Intermittent access day 1 total infusions0.20.41.41.20.2-0.20.0
Intermittent access day 15 total infusions0.10.20.50.20.20.50.7
Intermittent access terminal intake (last 3 days)0.10.10.4-0.20.10.30.6
Intermittent access total infusions0.10.20.40.4-0.10.30.6
Intermittent access day 1 locomotion0.50.71.11.10.6-0.9-0.7
Intermittent access day 15 total locomotion0.00.00.20.00.1-0.00.4
Intermittent access total locomotion0.20.20.40.50.00.40.7
Intermittent access standard deviation0.40.81.5-0.7-0.41.01.2
Left kidney weight0.41.82.2-1.5-1.5-1.5-0.9
Right kidney weight0.52.13.7-1.6-0.9-1.9-1.0
Cocaine induced anxiety1.21.73.00.7-1.11.71.4
Post-drug Anxiety1.41.52.70.5-0.91.61.5
Baseline Anxiety0.10.10.30.20.2-0.5-0.1
Tail length0.10.61.4-1.2-0.70.40.5
Length with tail0.83.410.2-3.2-1.70.20.6
Length without tail0.82.58.6-2.9-1.1-0.10.1
Times rat made contact with spout0.50.61.6-1.30.7-0.3-0.3
Lifetime Intake0.10.10.30.60.10.10.3
Liver weight, left0.20.30.7-0.8-0.5-0.5-0.1
Liver weight, right0.20.41.0-1.0-0.2-0.6-0.1
Locomotor activity0.20.30.8-0.5-0.9-0.40.1
Locomotor testing distance0.10.10.3-0.2-0.6-0.3-0.2
Locomotor testing rearing0.10.30.60.40.1-0.7-0.7
Locomotion in novel chamber1.11.42.0-0.91.4-1.2-1.2
Locomotion in novel chamber post-restriction0.30.50.7-0.60.8-0.8-0.7
Fecal boli incidents, locomotor time 10.40.61.10.9-1.10.60.4
Change in fecal boli incidents, locomotor task0.60.62.0-0.51.40.20.2
Time >=10cm from walls, locomotor time 11.41.53.9-2.00.9-0.9-0.7
Bouts of movement, locomotor time 10.10.10.3-0.1-0.6-0.3-0.1
Total resting periods, locomotor time 10.10.10.3-0.0-0.5-0.3-0.1
Rest time, locomotor task time 11.01.21.50.9-1.01.21.2
Distance moved, locomotor task time 11.82.73.8-1.61.2-1.9-1.8
Vertical activity count, locomotor time 11.33.05.2-0.62.3-1.8-1.8
Time >=10cm from walls, locomotor time 20.81.23.2-1.21.8-0.3-0.2
Bouts of movement, locomotor time 20.20.41.30.2-1.1-0.30.1
Total resting periods, locomotor time 20.30.51.9-0.0-1.4-0.10.3
Rest time, locomotor task time 20.81.01.60.0-1.31.11.0
Distance moved, locomotor task time 21.72.02.8-1.31.2-1.7-1.4
Vertical activity count, locomotor time 20.50.71.4-0.51.2-0.8-0.7
Light reinforcement 10.71.83.9-1.2-2.00.90.9
Light reinforcement 21.21.83.10.2-0.91.81.8
Bone: marrow area0.20.41.7-1.3-0.20.1-0.1
Bone: maximum diameter0.10.10.2-0.3-0.10.40.5
Bone: maximum force0.10.30.5-0.00.7-0.6-0.5
Bone: maximum moment0.10.10.2-0.20.5-0.4-0.3
Mean time between licks in bursts0.40.92.01.41.2-0.3-0.3
Mean num. licks in bursts0.50.71.61.30.00.90.7
Cd content in liver0.20.20.5-0.70.3-0.10.4
Co content in liver1.92.24.72.21.01.31.0
Cu content in liver6.57.711.21.13.4-3.0-3.0
Fe content in liver1.21.53.82.01.1-0.5-0.8
K content in liver0.30.31.11.1-0.3-0.1-0.2
Mg content in liver0.30.30.90.90.5-0.3-0.2
Mn content in liver0.50.51.2-0.10.2-0.9-1.1
Na content in liver4.64.96.31.9-2.12.52.4
Rb content in liver1.01.22.11.41.40.4-0.8
Se content in liver1.21.45.22.30.4-0.2-0.6
Sr content in liver1.61.42.2-0.7-1.51.01.3
Zn content in liver1.31.43.2-1.20.8-1.8-0.7
Bone: minimum diameter0.00.00.10.20.3-0.0-0.1
Time in familiar zone, hab. session 10.10.10.20.20.50.4-0.3
Time in novel zone, hab. session 10.20.20.70.80.1-0.00.4
Total zone transitions, hab. session 10.40.51.5-1.2-0.7-0.2-0.2
Total locomotion distance, hab. session 10.40.61.0-1.0-0.3-0.9-0.8
Locomotion velocity, hab. session 10.71.01.8-1.3-0.3-1.0-1.0
Time in familiar zone, hab. session 20.20.20.60.20.80.3-0.0
Time in novel zone, hab. session 20.20.20.50.1-0.70.00.5
Total zone transitions, hab. session 20.60.82.9-1.70.0-0.5-0.2
Total locomotion distance, hab. session 21.52.04.7-2.20.2-1.5-1.1
Locomotion velocity, hab. session 21.62.24.3-2.10.4-1.6-1.3
Novel to familiar place preference ratio0.91.02.3-1.5-0.8-0.9-0.4
Novelty place preference0.80.81.8-1.3-0.6-1.0-0.4
Time in novel zone, NPP test0.70.71.8-1.3-0.9-0.60.0
Total zone transitions, NPP test1.11.52.4-0.3-1.11.61.5
Total locomotion distance, NPP test0.71.02.8-1.70.1-0.9-0.4
Locomotion velocity, NPP test0.60.81.8-1.30.2-1.0-0.6
Intraocular pressure0.40.61.3-0.80.1-1.1-0.6
Delta distance traveled before/after self-admin0.40.41.20.21.1-0.3-0.6
Delta ambulatory time before/after self-admin0.20.20.60.10.8-0.2-0.4
Parametrial fat weight2.55.98.30.0-2.82.72.9
Pavlov. Cond. lever latency0.40.51.41.20.60.50.2
Pavlov. Cond. magazine entry latency0.00.00.10.10.30.1-0.3
Pavlov. Cond. change in total contacts0.40.40.7-0.3-0.80.60.7
Pavlov. Cond. index score0.10.10.5-0.7-0.1-0.0-0.2
Pavlov. Cond. latency score0.10.20.6-0.8-0.3-0.1-0.1
Pavlov. Cond. lever contacts0.30.30.9-0.9-0.1-0.5-0.4
Pavlov. Cond. magazine entry number0.00.00.1-0.0-0.1-0.3-0.0
Pavlov. Cond. intertrial magazine entries0.60.71.00.5-0.81.00.9
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.6-0.30.1-0.2
Pavlov. Cond. response bias0.10.10.3-0.6-0.20.1-0.0
Pavlov. Cond. lever latency2.02.87.42.71.80.3-0.6
Pavlov. Cond. magazine entry latency1.31.55.9-2.4-0.0-0.40.3
Pavlov. Cond. change in total contacts1.72.77.4-2.7-1.6-0.10.8
Pavlov. Cond. index score2.23.010.5-3.2-1.0-0.60.3
Pavlov. Cond. latency score2.22.910.5-3.2-0.7-0.70.1
Pavlov. Cond. lever contacts2.33.28.1-2.8-1.9-0.20.9
Pavlov. Cond. magazine entry number1.21.55.32.30.80.4-0.3
Pavlov. Cond. intertrial magazine entries1.72.65.12.3-1.01.71.1
Pavlov. Cond. lever-magazine prob. diff.2.12.910.1-3.2-1.0-0.70.1
Pavlov. Cond. response bias2.02.77.5-2.7-1.6-0.20.7
Time in closed arm before self-admin0.50.71.21.11.1-0.3-0.6
Time in closed arm after self-admin0.60.61.5-0.01.2-0.7-0.6
Time in open arm before self-admin0.50.50.8-0.9-0.90.40.5
Time in open arm after self-admin0.10.10.2-0.2-0.50.30.1
Bone: periosteal estimation0.00.10.2-0.40.1-0.3-0.3
Bone: periosteal perimeter0.00.00.1-0.40.20.00.1
Bone: post-yield work0.91.32.1-0.4-1.11.41.4
Progressive ratio test 1 active lever presses0.30.41.61.3-0.3-0.00.1
Progressive ratio test 1 breakpoint0.30.41.31.1-0.3-0.00.1
Progressive ratio test 1 inactive lever presses0.50.81.60.7-0.1-1.3-1.0
Progressive ratio test 2 active lever presses0.10.10.20.5-0.2-0.10.3
Progressive ratio test 2 breakpoint0.10.10.10.4-0.1-0.20.2
Progressive ratio test 2 inactive lever presses0.71.11.51.01.2-1.1-1.0
Incentive Sensitization - Responses0.30.41.20.2-0.60.51.1
Incentive Sensitization - Breakpoint0.20.20.60.0-0.40.20.8
Sum of active levers in priming session hrs 5-60.30.31.11.10.30.20.0
Progressive ratio0.71.12.1-0.41.1-1.5-1.0
Food seeking constrained by brief footshock0.30.40.8-0.70.1-0.9-0.6
Seeking ratio, punishment vs. effort0.50.71.5-0.2-1.20.80.7
Retroperitoneal fat weight6.427.241.01.6-5.36.46.1
Reaction time number correct0.10.20.3-0.6-0.50.10.5
Reaction time mean minus median2.25.69.11.3-2.32.53.0
Reaction time mean minus median AUC1.84.58.31.3-1.72.22.9
Reaction time num false alarms0.10.20.50.30.70.1-0.1
Reaction time num false alarms AUC0.00.10.20.30.4-0.1-0.1
Reaction time trials correct on left0.10.20.3-0.6-0.50.10.5
Reaction time trials on left0.10.20.3-0.5-0.40.10.5
Reaction time mean0.91.44.72.2-0.20.60.7
Reaction time mean AUC1.11.85.12.3-0.50.91.0
Median of all reaction times0.81.13.92.00.5-0.1-0.3
Reaction time omissions0.30.41.41.20.4-0.00.2
Reaction time false alarm rate0.20.20.40.60.7-0.1-0.3
Reaction time premature initiation rate3.34.57.4-1.3-1.92.32.7
Reaction time premature initiations2.54.57.3-1.6-1.92.12.7
Std. dev. reaction times1.93.64.82.1-1.41.72.2
Reaction time trials completed0.10.20.3-0.5-0.40.10.5
Reaction time trials AUC0.10.10.3-0.6-0.3-0.00.4
Run reversals in cocaine runway, females1.21.22.20.5-1.51.21.0
Run reversals in cocaine runway, males0.10.10.2-0.3-0.1-0.4-0.4
Latency to leave start box in cocaine runway0.60.71.10.7-0.71.10.7
Latency to leave start box in cocaine runway, F0.30.30.60.1-0.70.80.5
Latency to leave start box in cocaine runway, M0.50.40.91.0-0.30.70.5
Std. dev. time between licks in bursts0.20.30.90.9-0.20.20.5
Total sessions with >9 infusions0.40.51.91.40.3-0.10.1
Short access day 1 total inactive lever presses0.10.10.10.20.3-0.3-0.4
Short access day 10 total inactive lever presses1.12.65.00.1-2.21.71.6
Short access day 1 total infusions0.10.10.20.0-0.00.40.3
Short access day 10 total infusions0.81.01.31.11.1-0.9-0.9
Short access total infusions0.20.20.80.90.2-0.1-0.1
Short access day 1 locomotion0.20.20.50.3-0.20.60.7
Short access day 10 total locomotion0.91.74.82.21.3-0.4-0.6
Short access total locomotion0.80.93.21.80.10.50.5
One hour access (0.3 mA shock)0.10.10.2-0.1-0.40.00.5
Compulsive drug intake1.61.82.9-1.5-0.3-1.7-1.5
One hour access (shock baseline)0.50.81.11.00.60.90.9
Social response proportion0.30.30.80.30.90.50.1
Social responses0.20.20.60.80.40.40.3
Social time0.20.20.40.20.60.50.5
Soleus weight0.72.04.4-1.50.3-2.1-1.1
Bone: stiffness0.10.10.3-0.5-0.0-0.40.1
Tibialis anterior weight0.41.22.2-1.1-1.50.31.2
Time to tail flick, vehicle, before self-admin0.30.30.70.00.2-0.8-0.8
Time to tail flick, vehicle, after self-admin1.11.42.0-1.30.7-1.4-1.2
Time to tail flick, test, before self-admin2.62.74.9-0.72.2-1.6-1.8
Time to tail flick, test, after self-admin0.60.61.61.30.60.60.4
Delta time to tail flick, vehicle, before/after SA0.50.41.4-1.20.3-0.5-0.3
Delta time to tail flick, test, before/after SA5.15.27.21.5-2.22.62.7
Tibia length0.51.51.8-1.1-1.31.11.3
Ambulatory time before self-admin0.20.30.4-0.40.2-0.6-0.6
Ambulatory time after self-admin1.51.73.7-0.21.9-1.2-1.3
Bone: tissue strength1.51.52.21.2-0.61.51.4
Total heroin consumption1.11.32.3-0.80.5-1.5-1.4
Bone: trabecular number0.40.61.10.51.0-0.8-0.7
Bone: trabecular spacing0.91.22.0-0.9-1.41.01.0
Bone: trabecular thickness1.82.25.80.32.4-1.4-1.0
Bone: trabecular tissue density2.74.06.4-0.71.9-2.5-2.3
Water consumed over 24 hours0.00.00.1-0.10.3-0.30.0
Number of responses in last shaping day1.11.22.1-1.51.0-1.0-0.7