Baz2a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Baz2a 0.11 0.07 9.2e-06 0.09 0.09 0.08 0.08 1.4e-05 1.4e-05 4.7e-05 6.5e-05
2 PL gene expression Baz2a 0.04 0.03 7.5e-05 0.05 0.04 0.04 0.04 8.3e-06 2.7e-05 1.9e-05 1.2e-05
3 NAcc isoform ratio XM_039078960.1 0.02 0.02 4.3e-03 0.02 0.01 0.03 0.01 2.6e-03 1.0e-02 4.1e-04 1.3e-02
4 Brain gene expression Baz2a 0.06 0.04 1.5e-03 0.03 0.03 0.03 0.03 8.2e-04 1.3e-03 1.1e-03 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.37.3-0.9-0.90.3-2.7
Area under the delay curve0.10.10.2-0.1-0.3-0.3-0.4
BMI with tail5.919.128.55.35.3-4.40.7
BMI without tail1.12.22.91.71.7-1.60.8
Body weight0.73.14.32.12.1-1.90.4
Weight adjusted by age0.10.10.50.30.1-0.10.7
Bone surface2.95.215.1-1.6-1.60.7-3.9
Bone volume3.05.015.2-1.5-1.50.5-3.9
Breakpoint value in progressive ratio session1.82.03.1-1.6-1.51.80.2
Number of licking bursts3.64.26.02.42.5-1.81.4
Context. condit. distance diff. score0.10.20.30.30.5-0.60.2
Locomotion velocity, session 10.70.81.9-0.6-0.80.1-1.4
Locomotion distance, session 11.01.33.3-1.0-0.90.5-1.8
Locomotion velocity, session 22.93.44.5-2.0-2.01.1-2.1
Locomotion distance, session 23.34.75.4-2.3-2.31.9-2.1
Locomotion velocity, session 33.84.46.5-2.5-2.62.2-0.2
Locomotion distance, session 30.10.10.1-0.3-0.20.30.3
Stereotopy head waving bouts, day 34.14.86.8-2.5-2.62.3-1.0
Stereotopy head waving duration, day 32.63.14.5-2.0-2.11.8-0.7
Locomotion velocity, session 70.10.20.4-0.3-0.20.3-0.6
Locomotion distance, session 70.40.50.80.50.9-0.30.9
Stereotopy head waving bouts, day 71.41.62.0-1.3-1.40.9-1.4
Stereotopy head waving duration, day 71.72.02.7-1.5-1.60.9-1.6
Locomotion velocity, session 83.03.64.4-2.1-2.11.3-2.1
Locomotion distance, session 80.40.61.0-1.0-0.80.7-0.7
Degree of sensitization distance0.50.50.90.71.0-0.7-0.0
Degree of sensitization stereotypy0.20.30.9-0.2-0.2-0.1-1.0
Conditioned locomotion1.72.02.81.41.5-1.01.7
Cocaine response after cond. corrected2.83.13.81.91.9-1.51.7
Cocaine response after cond. not corrected3.13.44.12.02.0-1.51.8
Cocaine response before conditioning0.50.60.9-0.9-0.80.8-0.6
Saline control response0.20.30.40.40.6-0.60.5
Bone: connectivity density0.81.34.1-0.7-0.70.3-2.0
Bone: cortical apparent density0.71.01.51.21.0-1.20.3
Bone: cortical area0.60.92.30.50.6-0.8-1.5
Bone: cortical porosity0.20.20.6-0.2-0.00.1-0.8
Bone: cortical porosity0.30.31.3-0.00.1-0.2-1.1
Bone: cortical thickness0.81.31.61.31.3-1.3-0.6
Bone: cortical thickness0.81.01.41.21.1-0.90.7
Bone: cortical tissue density0.50.71.11.00.7-1.00.3
Condit. Reinf. active minus inactive responses1.31.52.3-1.5-1.41.2-0.4
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.10.30.5
Condit. Reinf. active responses2.53.14.1-2.0-2.01.6-1.3
Condit. Reinf. inactive responses1.82.22.6-1.5-1.61.2-1.5
Incentive salience index mean1.51.82.3-1.5-1.51.1-1.1
Condit. Reinf. lever presses1.52.14.1-1.3-1.50.6-2.0
Condit. Reinf. active minus inactive responses0.91.11.4-1.0-1.01.20.8
Condit. Reinf. active-inactive response ratio0.70.72.6-0.0-0.10.51.6
Condit. Reinf. active responses0.60.81.2-1.0-1.01.10.0
Condit. Reinf. inactive responses0.40.50.7-0.7-0.60.6-0.8
Condit. Reinf. lever presses1.31.72.7-1.4-1.41.60.6
Condit. Reinf. lever reinforcers received0.40.50.9-0.7-0.80.90.3
Conditioned reinforcement - actives0.20.20.6-0.0-0.20.1-0.8
Conditioned reinforcement - inactives1.51.62.11.51.2-1.31.2
Conditioned locomotion1.01.21.9-1.0-1.31.4-0.6
Patch foraging indifference point 0 sec2.64.26.22.52.4-2.2-0.2
Patch foraging indifference point AUC0.30.30.6-0.7-0.60.80.1
Delay disc. indifference point, 0s delay1.11.22.70.60.4-1.3-1.6
Delay disc. indifference point, 16s delay0.20.20.4-0.6-0.6-0.1-0.2
Delay disc. indifference point, 2s delay0.30.30.70.20.20.7-0.8
Delay disc. indifference point, 24s delay0.30.30.70.50.4-0.8-0.1
Delay disc. indifference point, 4s delay0.70.71.3-0.7-0.70.7-1.1
Delay disc. indifference point, 8s delay0.40.40.80.40.1-0.90.7
Indifference point function ln k0.10.20.20.40.5-0.50.1
Indifference point function log k0.10.20.20.40.5-0.50.1
Patch foraging total patch changes 0 sec2.64.36.62.62.4-2.1-0.1
Patch foraging total patch changes 12 sec2.12.74.22.11.9-1.41.0
Patch foraging total patch changes 18 sec0.00.00.10.20.2-0.10.0
Patch foraging total patch changes 24 sec0.30.40.50.70.6-0.7-0.3
Patch foraging total patch changes 6 sec1.52.33.51.91.8-1.60.1
Patch foraging time to switch 0 sec0.10.20.50.0-0.1-0.4-0.7
Patch foraging water rate 0 sec0.81.31.71.21.3-0.91.1
Patch foraging water rate 12 sec1.21.92.61.61.5-1.11.2
Patch foraging water rate 18 sec1.11.54.80.70.8-0.32.2
Patch foraging water rate 24 sec3.14.47.92.21.7-1.32.8
Patch foraging water rate 6 sec0.40.62.1-0.30.10.31.4
Seeking ratio, delayed vs. immediate footshock1.41.62.1-1.3-1.41.2-1.0
Distance traveled before self-admin0.60.61.4-0.8-0.61.2-0.5
Distance traveled after self-admin0.30.30.9-0.2-0.40.9-0.4
Extensor digitorum longus weight3.915.220.04.44.5-4.12.2
Bone: elastic displacement0.00.00.10.20.10.0-0.3
Bone: elastic work0.40.50.60.80.8-0.6-0.7
Bone: endosteal estimation0.40.91.00.91.0-1.0-0.8
Bone: endosteal perimeter0.40.82.2-0.7-0.60.5-1.5
Epididymis fat weight0.00.10.10.10.10.30.4
Delta time in closed arm before/after self-admin3.02.95.11.91.6-0.52.3
Delta time in open arm before/after self-admin0.80.71.40.61.1-1.2-0.3
Diff in mean of infusions in LGA sessions1.11.21.7-1.3-1.31.2-0.0
Delay discount exponential model param0.10.10.10.20.30.10.4
Extinction: sum of active levers before priming1.51.52.3-1.4-0.81.51.1
Active lever presses in extinction session 60.60.61.1-1.1-0.80.4-0.5
Bone: final force1.42.32.71.61.6-1.7-1.2
Bone: final moment1.42.22.71.61.6-1.6-1.2
Food consumed during 24 hour testing period0.50.61.10.91.1-0.60.0
Glucose1.31.92.81.71.7-1.40.3
Heart weight0.10.10.2-0.10.2-0.20.5
Delay discount hyperbolic model param0.00.10.2-0.00.10.10.4
Intermittent access intake day 1-15 change0.10.10.10.3-0.20.20.2
Intermittent access intake escalation0.60.61.60.80.4-0.11.2
Intermittent access intake escalation 20.30.31.00.0-0.10.31.0
Intermitt. access day 1 inactive lever presses0.50.51.60.30.4-0.21.3
Intermitt. access day 15 inactive lever presses0.40.40.6-0.4-0.80.60.8
Intermitt. access escalation Index1.11.01.8-1.2-0.70.3-1.3
Intermittent access day 1 total infusions0.10.20.20.50.5-0.4-0.2
Intermittent access day 15 total infusions0.40.41.01.00.6-0.40.4
Intermittent access terminal intake (last 3 days)0.10.10.20.50.2-0.3-0.4
Intermittent access total infusions0.40.40.90.90.7-0.60.1
Intermittent access day 1 locomotion0.00.00.00.00.1-0.10.2
Intermittent access day 15 total locomotion0.20.20.5-0.1-0.70.40.2
Intermittent access total locomotion0.10.20.4-0.2-0.70.4-0.2
Intermittent access standard deviation0.10.10.20.50.10.10.4
Left kidney weight0.30.82.6-0.6-0.5-0.2-1.6
Right kidney weight0.41.11.5-1.2-1.20.6-0.9
Cocaine induced anxiety2.02.33.1-1.6-1.81.3-1.4
Post-drug Anxiety1.61.73.7-1.2-1.20.7-1.9
Baseline Anxiety0.10.10.20.00.2-0.20.4
Tail length3.310.015.1-3.9-3.83.30.4
Length with tail1.55.68.8-3.0-2.92.3-0.5
Length without tail0.10.31.10.1-0.0-0.2-1.0
Times rat made contact with spout1.11.31.81.31.4-0.90.8
Lifetime Intake0.70.81.41.20.9-0.9-0.3
Liver weight, left1.72.84.22.02.0-1.60.9
Liver weight, right0.40.71.50.90.8-1.2-0.0
Locomotor activity4.36.810.6-3.2-3.32.1-1.3
Locomotor testing distance1.62.74.3-1.9-2.11.3-0.9
Locomotor testing rearing0.00.10.2-0.2-0.30.00.5
Locomotion in novel chamber0.30.30.80.70.90.20.1
Locomotion in novel chamber post-restriction2.02.43.9-1.8-1.52.0-0.3
Fecal boli incidents, locomotor time 10.91.01.70.91.3-0.41.2
Change in fecal boli incidents, locomotor task1.41.32.2-0.9-1.40.4-1.5
Time >=10cm from walls, locomotor time 10.50.51.10.60.6-0.6-1.0
Bouts of movement, locomotor time 10.30.30.5-0.7-0.70.20.2
Total resting periods, locomotor time 10.91.01.7-1.3-1.30.8-0.1
Rest time, locomotor task time 10.60.71.3-1.0-1.10.6-0.5
Distance moved, locomotor task time 10.50.51.10.50.6-0.7-1.0
Vertical activity count, locomotor time 11.31.42.11.41.1-1.40.4
Time >=10cm from walls, locomotor time 21.61.73.51.41.9-0.90.7
Bouts of movement, locomotor time 20.70.71.4-0.9-0.8-0.1-1.2
Total resting periods, locomotor time 20.90.91.8-1.0-0.9-0.1-1.3
Rest time, locomotor task time 20.50.60.9-0.8-0.80.4-1.0
Distance moved, locomotor task time 20.50.60.90.61.0-0.61.0
Vertical activity count, locomotor time 22.42.63.11.51.8-1.71.5
Light reinforcement 12.54.66.5-2.5-2.52.2-0.8
Light reinforcement 20.50.60.8-0.9-0.90.9-0.3
Bone: marrow area0.40.80.90.81.0-0.9-0.8
Bone: maximum diameter0.91.73.4-1.3-1.20.7-1.8
Bone: maximum force1.52.63.41.71.9-1.8-1.0
Bone: maximum moment1.52.63.41.71.8-1.7-1.0
Mean time between licks in bursts0.20.30.7-0.4-0.40.80.6
Mean num. licks in bursts0.81.01.4-1.2-1.20.9-0.6
Cd content in liver0.60.71.21.01.1-0.50.1
Co content in liver0.91.01.4-1.2-1.11.00.7
Cu content in liver0.70.81.60.60.7-0.8-1.3
Fe content in liver0.70.81.31.11.1-0.70.7
K content in liver0.90.91.3-1.1-0.80.7-1.1
Mg content in liver0.90.92.1-0.9-0.70.6-1.4
Mn content in liver2.32.67.7-1.1-1.00.7-2.8
Na content in liver0.20.20.7-0.20.0-0.1-0.8
Rb content in liver0.50.71.60.60.4-0.7-1.3
Se content in liver0.10.10.2-0.4-0.20.3-0.2
Sr content in liver0.50.51.80.20.00.11.3
Zn content in liver1.41.63.1-1.1-0.81.11.8
Bone: minimum diameter0.20.41.5-0.00.2-0.4-1.2
Time in familiar zone, hab. session 12.52.43.9-1.8-1.52.00.3
Time in novel zone, hab. session 11.71.62.51.21.1-1.6-1.2
Total zone transitions, hab. session 11.01.42.6-1.1-1.10.9-1.6
Total locomotion distance, hab. session 13.04.36.3-2.0-2.21.5-2.5
Locomotion velocity, hab. session 12.73.94.7-2.0-2.21.6-2.0
Time in familiar zone, hab. session 22.62.63.6-1.8-1.71.90.8
Time in novel zone, hab. session 22.72.73.81.81.7-1.9-1.0
Total zone transitions, hab. session 20.70.93.3-0.1-0.2-0.4-1.8
Total locomotion distance, hab. session 21.11.52.1-1.2-1.40.7-1.4
Locomotion velocity, hab. session 21.52.03.2-1.3-1.50.8-1.8
Novel to familiar place preference ratio1.41.51.81.11.0-1.3-1.3
Novelty place preference1.01.01.60.90.8-1.1-1.3
Time in novel zone, NPP test1.31.31.61.11.0-1.3-1.2
Total zone transitions, NPP test0.20.30.80.30.2-0.3-0.9
Total locomotion distance, NPP test0.40.61.8-0.3-0.60.1-1.4
Locomotion velocity, NPP test0.50.71.7-0.6-0.90.3-1.3
Intraocular pressure0.40.61.6-0.4-0.20.61.3
Delta distance traveled before/after self-admin0.10.10.30.0-0.20.6-0.1
Delta ambulatory time before/after self-admin0.10.20.40.0-0.30.4-0.6
Parametrial fat weight0.00.10.10.10.30.20.3
Pavlov. Cond. lever latency0.70.91.70.71.0-0.31.3
Pavlov. Cond. magazine entry latency1.01.31.9-1.3-1.41.20.1
Pavlov. Cond. change in total contacts0.10.10.20.40.3-0.4-0.2
Pavlov. Cond. index score0.81.01.5-1.1-1.20.7-0.9
Pavlov. Cond. latency score1.21.52.1-1.3-1.50.7-1.3
Pavlov. Cond. lever contacts0.91.02.6-0.8-1.00.2-1.6
Pavlov. Cond. magazine entry number0.40.50.80.90.9-0.60.2
Pavlov. Cond. intertrial magazine entries0.20.31.00.20.20.11.0
Pavlov. Cond. lever-magazine prob. diff.0.91.11.5-1.2-1.20.8-0.9
Pavlov. Cond. response bias0.60.81.3-1.1-1.00.8-0.3
Pavlov. Cond. lever latency1.11.52.21.51.4-1.40.2
Pavlov. Cond. magazine entry latency1.71.93.0-1.7-1.61.4-0.5
Pavlov. Cond. change in total contacts0.30.40.7-0.9-0.70.80.0
Pavlov. Cond. index score1.21.62.5-1.6-1.41.4-0.2
Pavlov. Cond. latency score1.51.92.9-1.7-1.51.5-0.4
Pavlov. Cond. lever contacts0.71.01.5-1.2-1.11.20.2
Pavlov. Cond. magazine entry number1.41.82.71.71.5-1.40.5
Pavlov. Cond. intertrial magazine entries0.50.70.90.80.7-1.00.9
Pavlov. Cond. lever-magazine prob. diff.1.41.72.8-1.7-1.41.4-0.3
Pavlov. Cond. response bias1.21.62.3-1.5-1.41.40.2
Time in closed arm before self-admin0.60.71.6-0.4-0.30.9-1.3
Time in closed arm after self-admin0.40.41.20.70.21.1-0.0
Time in open arm before self-admin0.50.61.90.40.1-1.40.5
Time in open arm after self-admin3.53.89.51.41.9-3.10.7
Bone: periosteal estimation0.61.32.70.70.9-1.1-1.6
Bone: periosteal perimeter0.50.83.1-0.3-0.30.0-1.8
Bone: post-yield work0.10.20.50.30.4-0.70.1
Progressive ratio test 1 active lever presses0.90.91.31.01.1-1.10.3
Progressive ratio test 1 breakpoint0.90.91.41.01.1-1.20.2
Progressive ratio test 1 inactive lever presses0.10.10.1-0.3-0.2-0.2-0.3
Progressive ratio test 2 active lever presses0.30.30.50.60.4-0.7-0.1
Progressive ratio test 2 breakpoint0.10.10.40.0-0.2-0.3-0.6
Progressive ratio test 2 inactive lever presses0.20.20.30.50.1-0.4-0.5
Incentive Sensitization - Responses0.10.10.3-0.3-0.50.2-0.1
Incentive Sensitization - Breakpoint0.20.20.4-0.4-0.70.3-0.4
Sum of active levers in priming session hrs 5-60.50.52.0-0.30.21.40.1
Progressive ratio0.91.11.51.21.2-1.00.6
Food seeking constrained by brief footshock0.91.11.5-1.2-1.21.2-0.1
Seeking ratio, punishment vs. effort1.41.82.6-1.6-1.61.4-0.3
Retroperitoneal fat weight1.65.27.12.52.7-2.60.9
Reaction time number correct1.72.43.61.91.8-1.11.3
Reaction time mean minus median2.22.95.3-2.2-2.31.2-0.4
Reaction time mean minus median AUC3.54.57.6-2.3-2.81.4-1.7
Reaction time num false alarms0.50.71.01.00.8-0.90.5
Reaction time num false alarms AUC0.71.01.21.11.0-1.00.9
Reaction time trials correct on left1.72.43.61.91.8-1.11.3
Reaction time trials on left1.62.23.41.91.7-1.01.2
Reaction time mean1.82.54.1-2.0-1.71.3-1.2
Reaction time mean AUC1.11.52.4-1.6-1.30.8-1.1
Median of all reaction times1.01.32.1-1.4-1.10.9-1.1
Reaction time omissions0.10.10.2-0.1-0.2-0.0-0.5
Reaction time false alarm rate0.00.00.10.00.0-0.4-0.1
Reaction time premature initiation rate1.01.31.9-1.4-1.11.11.0
Reaction time premature initiations0.60.82.9-0.3-0.10.51.7
Std. dev. reaction times1.52.13.4-1.8-1.81.0-0.8
Reaction time trials completed1.62.23.41.91.7-1.01.2
Reaction time trials AUC2.02.84.12.02.0-1.11.4
Run reversals in cocaine runway, females1.41.42.2-1.1-1.51.2-0.8
Run reversals in cocaine runway, males2.42.33.3-1.7-1.81.4-0.9
Latency to leave start box in cocaine runway0.60.72.1-0.5-0.50.0-1.5
Latency to leave start box in cocaine runway, F1.11.34.5-0.5-0.60.0-2.1
Latency to leave start box in cocaine runway, M0.30.31.00.10.1-0.21.0
Std. dev. time between licks in bursts0.70.81.7-0.7-0.80.7-1.3
Total sessions with >9 infusions0.60.72.20.70.2-0.3-1.5
Short access day 1 total inactive lever presses0.10.10.20.4-0.1-0.1-0.2
Short access day 10 total inactive lever presses0.20.20.80.00.1-0.30.9
Short access day 1 total infusions0.70.82.20.60.1-0.7-1.5
Short access day 10 total infusions0.50.60.91.00.8-0.8-0.1
Short access total infusions0.80.91.31.00.7-1.1-1.1
Short access day 1 locomotion0.30.30.5-0.4-0.70.2-0.7
Short access day 10 total locomotion0.50.50.8-0.5-0.80.90.5
Short access total locomotion0.10.20.3-0.3-0.50.3-0.4
One hour access (0.3 mA shock)0.40.41.01.00.7-0.50.0
Compulsive drug intake0.00.00.10.20.3-0.2-0.1
One hour access (shock baseline)0.60.71.51.20.9-0.40.7
Social response proportion1.21.31.9-1.3-1.41.0-0.7
Social responses8.010.314.8-3.8-3.83.2-1.5
Social time0.60.81.31.00.8-1.10.6
Soleus weight3.49.913.73.73.4-3.70.9
Bone: stiffness2.33.75.12.22.2-2.3-0.5
Tibialis anterior weight0.72.33.31.71.8-1.80.4
Time to tail flick, vehicle, before self-admin5.86.013.1-1.8-1.93.6-2.0
Time to tail flick, vehicle, after self-admin0.40.40.9-0.3-0.3-0.61.0
Time to tail flick, test, before self-admin2.01.93.0-1.5-1.70.4-1.4
Time to tail flick, test, after self-admin0.70.81.5-0.40.01.2-1.2
Delta time to tail flick, vehicle, before/after SA3.93.87.31.41.5-2.72.0
Delta time to tail flick, test, before/after SA0.60.61.00.20.81.00.7
Tibia length0.82.13.5-1.6-1.91.60.2
Ambulatory time before self-admin0.00.00.1-0.3-0.00.2-0.2
Ambulatory time after self-admin0.10.20.50.0-0.10.7-0.3
Bone: tissue strength3.13.04.72.12.2-1.8-0.2
Total heroin consumption1.72.03.2-1.7-1.21.8-0.7
Bone: trabecular number1.62.53.9-1.6-1.51.1-2.0
Bone: trabecular spacing2.32.97.21.41.4-0.72.7
Bone: trabecular thickness3.23.812.4-1.3-1.10.2-3.5
Bone: trabecular tissue density4.46.28.52.92.8-2.61.4
Water consumed over 24 hours0.50.61.30.60.6-0.7-1.2
Number of responses in last shaping day0.60.61.5-0.6-1.20.7-0.2