Atg2a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Atg2a 0.04 0.03 8.2e-05 0.03 0.03 0.02 0.03 1.5e-04 6.5e-04 2.6e-03 7.6e-04
2 Brain gene expression Atg2a 0.06 0.03 3.1e-06 0.05 0.04 0.04 0.04 2.6e-05 2.9e-04 2.1e-04 1.5e-04
3 NAcc gene expression Atg2a 0.04 0.02 1.9e-05 0.05 0.04 0.04 0.05 4.5e-06 1.8e-05 8.3e-06 2.0e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.60.60.70.1
Area under the delay curve0.30.30.9-0.2-0.00.9
BMI with tail1.75.68.22.92.7-1.2
BMI without tail1.02.02.91.71.5-1.0
Body weight3.514.717.74.24.1-3.1
Weight adjusted by age2.42.73.31.71.8-1.4
Bone surface3.46.07.92.82.8-1.5
Bone volume1.01.72.61.51.6-0.3
Breakpoint value in progressive ratio session2.62.93.71.91.9-1.1
Number of licking bursts0.20.30.40.50.7-0.3
Context. condit. distance diff. score2.02.42.8-1.7-1.61.4
Locomotion velocity, session 10.10.20.40.10.2-0.6
Locomotion distance, session 10.40.50.60.80.7-0.5
Locomotion velocity, session 22.73.23.81.91.9-1.4
Locomotion distance, session 20.60.81.01.00.9-0.7
Locomotion velocity, session 30.10.20.2-0.4-0.50.3
Locomotion distance, session 30.00.10.1-0.2-0.30.2
Stereotopy head waving bouts, day 30.40.50.7-0.8-0.80.5
Stereotopy head waving duration, day 30.60.70.9-0.9-1.00.6
Locomotion velocity, session 70.91.02.0-0.8-0.71.4
Locomotion distance, session 70.10.20.3-0.3-0.30.5
Stereotopy head waving bouts, day 70.20.30.6-0.3-0.30.8
Stereotopy head waving duration, day 70.81.01.51.11.2-0.5
Locomotion velocity, session 81.41.72.71.11.1-1.6
Locomotion distance, session 80.30.40.6-0.5-0.50.8
Degree of sensitization distance0.10.10.2-0.1-0.10.4
Degree of sensitization stereotypy0.30.40.60.70.8-0.1
Conditioned locomotion1.92.22.41.51.4-1.5
Cocaine response after cond. corrected1.31.52.0-1.4-1.40.6
Cocaine response after cond. not corrected1.01.21.7-1.3-1.30.5
Cocaine response before conditioning0.50.60.91.00.9-0.5
Saline control response4.45.76.22.52.4-2.3
Bone: connectivity density1.72.63.71.81.9-1.0
Bone: cortical apparent density0.20.30.40.60.5-0.5
Bone: cortical area0.60.91.11.00.9-0.8
Bone: cortical porosity0.10.10.10.30.3-0.2
Bone: cortical porosity0.60.60.70.80.8-0.8
Bone: cortical thickness3.04.95.92.22.0-2.4
Bone: cortical thickness1.01.12.10.80.8-1.5
Bone: cortical tissue density0.30.40.50.70.6-0.7
Condit. Reinf. active minus inactive responses0.10.10.20.40.4-0.2
Condit. Reinf. active-inactive response ratio0.00.00.00.20.1-0.2
Condit. Reinf. active responses0.00.00.10.10.10.3
Condit. Reinf. inactive responses0.20.20.6-0.3-0.20.8
Incentive salience index mean0.20.20.30.60.6-0.2
Condit. Reinf. lever presses0.20.30.40.60.6-0.3
Condit. Reinf. active minus inactive responses0.40.51.1-0.3-0.51.1
Condit. Reinf. active-inactive response ratio1.31.42.7-0.8-0.91.6
Condit. Reinf. active responses0.10.10.30.30.00.6
Condit. Reinf. inactive responses0.30.30.40.60.6-0.5
Condit. Reinf. lever presses1.62.13.41.81.6-0.7
Condit. Reinf. lever reinforcers received0.20.20.40.60.50.3
Conditioned reinforcement - actives0.20.20.2-0.5-0.40.4
Conditioned reinforcement - inactives7.68.59.2-2.9-2.83.0
Conditioned locomotion7.99.510.9-3.3-3.32.6
Patch foraging indifference point 0 sec0.00.10.1-0.3-0.20.2
Patch foraging indifference point AUC3.64.15.32.32.2-1.5
Delay disc. indifference point, 0s delay0.40.40.9-0.5-0.40.9
Delay disc. indifference point, 16s delay1.71.73.0-1.1-1.01.7
Delay disc. indifference point, 2s delay0.10.10.2-0.3-0.10.4
Delay disc. indifference point, 24s delay0.00.00.0-0.2-0.20.0
Delay disc. indifference point, 4s delay0.10.10.2-0.3-0.20.4
Delay disc. indifference point, 8s delay0.20.20.5-0.1-0.00.7
Indifference point function ln k8.011.214.3-3.8-3.72.3
Indifference point function log k8.011.214.3-3.8-3.72.3
Patch foraging total patch changes 0 sec0.00.00.0-0.2-0.1-0.1
Patch foraging total patch changes 12 sec4.76.07.52.72.7-1.9
Patch foraging total patch changes 18 sec0.50.71.01.01.0-0.3
Patch foraging total patch changes 24 sec2.93.53.81.92.0-1.8
Patch foraging total patch changes 6 sec0.81.21.31.11.1-1.0
Patch foraging time to switch 0 sec1.31.92.91.71.7-0.4
Patch foraging water rate 0 sec3.55.77.9-2.6-2.81.5
Patch foraging water rate 12 sec6.710.314.2-3.8-3.81.6
Patch foraging water rate 18 sec2.93.85.4-2.3-2.31.0
Patch foraging water rate 24 sec3.44.86.8-2.4-2.61.2
Patch foraging water rate 6 sec3.45.07.8-2.6-2.80.8
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.3-0.30.7
Distance traveled before self-admin0.50.60.70.90.9-0.5
Distance traveled after self-admin0.10.10.20.50.4-0.3
Extensor digitorum longus weight7.730.234.95.95.8-4.8
Bone: elastic displacement0.91.01.7-1.1-1.3-0.1
Bone: elastic work1.11.42.90.90.7-1.7
Bone: endosteal estimation0.91.92.4-1.3-1.31.5
Bone: endosteal perimeter1.32.63.8-1.5-1.41.9
Epididymis fat weight3.07.07.3-2.6-2.62.7
Delta time in closed arm before/after self-admin0.10.10.30.00.2-0.6
Delta time in open arm before/after self-admin0.10.10.10.20.20.3
Diff in mean of infusions in LGA sessions0.20.30.40.60.6-0.1
Delay discount exponential model param0.20.20.60.1-0.0-0.8
Extinction: sum of active levers before priming4.14.15.32.22.3-1.4
Active lever presses in extinction session 62.62.63.01.71.7-1.4
Bone: final force2.94.75.62.42.3-1.8
Bone: final moment2.64.24.92.22.1-1.7
Food consumed during 24 hour testing period0.00.00.10.20.30.0
Glucose2.53.84.2-1.8-2.02.1
Heart weight3.75.26.0-2.4-2.42.0
Delay discount hyperbolic model param0.10.10.40.1-0.1-0.7
Intermittent access intake day 1-15 change0.70.70.8-0.8-0.90.7
Intermittent access intake escalation0.70.70.8-0.8-0.80.9
Intermittent access intake escalation 20.20.20.2-0.4-0.40.4
Intermitt. access day 1 inactive lever presses2.83.03.2-1.8-1.71.7
Intermitt. access day 15 inactive lever presses3.63.94.7-1.9-1.92.2
Intermitt. access escalation Index3.53.13.3-1.8-1.81.7
Intermittent access day 1 total infusions6.87.89.5-2.6-2.73.1
Intermittent access day 15 total infusions9.911.111.6-3.3-3.33.4
Intermittent access terminal intake (last 3 days)7.37.99.3-2.7-2.73.0
Intermittent access total infusions6.37.08.7-2.4-2.53.0
Intermittent access day 1 locomotion4.54.85.1-2.1-2.22.3
Intermittent access day 15 total locomotion6.36.87.6-2.5-2.52.8
Intermittent access total locomotion8.29.311.8-2.8-2.93.4
Intermittent access standard deviation1.31.41.5-1.2-1.21.1
Left kidney weight0.71.92.4-1.3-1.31.6
Right kidney weight0.20.40.8-0.4-0.50.9
Cocaine induced anxiety0.00.00.00.00.1-0.1
Post-drug Anxiety1.71.92.71.21.2-1.6
Baseline Anxiety2.62.83.11.61.6-1.8
Tail length1.13.35.01.61.5-2.2
Length with tail2.59.19.33.03.0-3.1
Length without tail2.24.95.32.32.3-2.0
Times rat made contact with spout0.40.50.50.70.7-0.7
Lifetime Intake5.46.27.6-2.3-2.42.8
Liver weight, left0.00.00.1-0.2-0.20.1
Liver weight, right0.00.10.1-0.3-0.2-0.2
Locomotor activity1.52.43.7-1.8-1.90.6
Locomotor testing distance2.03.45.4-2.1-2.30.4
Locomotor testing rearing1.82.84.2-2.0-2.00.6
Locomotion in novel chamber5.77.07.6-2.6-2.62.8
Locomotion in novel chamber post-restriction3.84.54.9-2.1-2.12.2
Fecal boli incidents, locomotor time 10.20.20.40.20.30.7
Change in fecal boli incidents, locomotor task0.10.10.2-0.1-0.2-0.5
Time >=10cm from walls, locomotor time 12.02.05.0-0.7-0.72.2
Bouts of movement, locomotor time 10.91.01.81.31.1-0.3
Total resting periods, locomotor time 10.60.71.21.10.9-0.0
Rest time, locomotor task time 11.41.61.9-1.2-1.41.2
Distance moved, locomotor task time 10.10.10.20.30.4-0.1
Vertical activity count, locomotor time 11.31.41.7-1.3-1.21.0
Time >=10cm from walls, locomotor time 20.10.10.10.30.40.2
Bouts of movement, locomotor time 20.30.30.50.70.6-0.2
Total resting periods, locomotor time 20.10.10.20.40.30.2
Rest time, locomotor task time 23.03.44.0-1.7-1.82.0
Distance moved, locomotor task time 21.71.92.51.21.3-1.6
Vertical activity count, locomotor time 20.40.41.2-0.2-0.0-1.1
Light reinforcement 10.10.10.2-0.4-0.40.1
Light reinforcement 21.01.32.2-0.9-0.91.5
Bone: marrow area0.92.02.4-1.4-1.31.5
Bone: maximum diameter0.10.20.30.60.5-0.2
Bone: maximum force2.74.66.32.52.4-1.4
Bone: maximum moment2.33.95.32.32.2-1.3
Mean time between licks in bursts0.91.33.10.70.5-1.8
Mean num. licks in bursts0.10.20.3-0.4-0.50.1
Cd content in liver1.31.41.6-1.2-1.11.3
Co content in liver0.91.11.6-1.3-1.20.3
Cu content in liver0.20.30.40.60.6-0.3
Fe content in liver0.10.20.20.40.4-0.4
K content in liver1.21.21.61.31.2-0.8
Mg content in liver0.10.10.10.30.10.3
Mn content in liver2.22.53.31.81.6-1.3
Na content in liver1.41.41.51.21.2-1.2
Rb content in liver1.82.22.7-1.5-1.61.3
Se content in liver0.10.20.5-0.0-0.10.7
Sr content in liver4.03.73.91.92.0-1.8
Zn content in liver1.21.31.91.21.4-0.7
Bone: minimum diameter0.91.72.3-1.2-1.11.5
Time in familiar zone, hab. session 10.30.30.3-0.6-0.50.5
Time in novel zone, hab. session 10.10.10.2-0.3-0.4-0.2
Total zone transitions, hab. session 10.60.81.11.01.1-0.5
Total locomotion distance, hab. session 10.40.61.1-0.6-0.61.0
Locomotion velocity, hab. session 10.10.10.3-0.1-0.10.5
Time in familiar zone, hab. session 20.30.30.8-0.2-0.1-0.9
Time in novel zone, hab. session 20.10.10.20.30.20.4
Total zone transitions, hab. session 21.11.52.01.41.4-0.7
Total locomotion distance, hab. session 20.10.10.2-0.0-0.00.5
Locomotion velocity, hab. session 20.20.30.7-0.2-0.20.8
Novel to familiar place preference ratio0.90.91.51.21.2-0.0
Novelty place preference0.40.40.70.80.80.2
Time in novel zone, NPP test0.30.30.50.60.70.2
Total zone transitions, NPP test2.23.24.02.02.0-1.3
Total locomotion distance, NPP test0.00.10.10.30.20.2
Locomotion velocity, NPP test0.10.10.10.30.30.2
Intraocular pressure1.01.41.9-1.0-1.41.1
Delta distance traveled before/after self-admin0.10.10.1-0.2-0.30.0
Delta ambulatory time before/after self-admin0.00.00.1-0.1-0.2-0.2
Parametrial fat weight2.75.46.9-2.1-2.12.6
Pavlov. Cond. lever latency0.20.30.4-0.6-0.60.3
Pavlov. Cond. magazine entry latency0.20.20.30.50.50.3
Pavlov. Cond. change in total contacts0.20.20.40.20.30.6
Pavlov. Cond. index score0.10.20.20.50.50.1
Pavlov. Cond. latency score0.10.10.10.40.30.1
Pavlov. Cond. lever contacts0.00.00.00.10.10.0
Pavlov. Cond. magazine entry number0.20.30.4-0.7-0.6-0.1
Pavlov. Cond. intertrial magazine entries0.70.80.9-0.9-0.90.9
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.80.7-0.1
Pavlov. Cond. response bias0.10.10.10.40.40.2
Pavlov. Cond. lever latency0.30.40.8-0.9-0.70.1
Pavlov. Cond. magazine entry latency3.33.84.72.12.2-1.4
Pavlov. Cond. change in total contacts1.31.82.91.71.6-0.2
Pavlov. Cond. index score2.02.53.61.91.9-0.8
Pavlov. Cond. latency score1.61.92.81.71.6-0.7
Pavlov. Cond. lever contacts0.40.50.80.90.8-0.3
Pavlov. Cond. magazine entry number6.07.39.2-3.0-3.01.9
Pavlov. Cond. intertrial magazine entries1.21.61.8-1.3-1.31.1
Pavlov. Cond. lever-magazine prob. diff.2.53.24.42.12.1-1.0
Pavlov. Cond. response bias1.52.13.01.71.6-0.8
Time in closed arm before self-admin0.00.00.10.20.20.1
Time in closed arm after self-admin0.10.10.1-0.3-0.20.2
Time in open arm before self-admin0.40.40.6-0.8-0.8-0.2
Time in open arm after self-admin0.10.10.2-0.4-0.4-0.2
Bone: periosteal estimation0.00.10.2-0.1-0.10.4
Bone: periosteal perimeter0.00.10.10.30.40.0
Bone: post-yield work0.60.81.80.60.61.3
Progressive ratio test 1 active lever presses3.43.53.9-1.9-2.01.8
Progressive ratio test 1 breakpoint3.03.13.5-1.8-1.91.6
Progressive ratio test 1 inactive lever presses1.51.71.7-1.3-1.31.3
Progressive ratio test 2 active lever presses5.55.96.1-2.4-2.52.4
Progressive ratio test 2 breakpoint6.57.28.0-2.7-2.82.5
Progressive ratio test 2 inactive lever presses10.311.912.0-3.4-3.43.5
Incentive Sensitization - Responses0.80.81.0-0.8-0.91.0
Incentive Sensitization - Breakpoint1.11.21.4-1.0-1.11.2
Sum of active levers in priming session hrs 5-61.21.11.51.21.2-0.7
Progressive ratio1.82.13.21.71.8-0.5
Food seeking constrained by brief footshock0.30.30.80.40.2-0.9
Seeking ratio, punishment vs. effort1.51.93.0-1.6-1.70.2
Retroperitoneal fat weight6.120.021.0-4.6-4.64.3
Reaction time number correct0.50.71.00.80.6-1.0
Reaction time mean minus median2.63.44.72.22.2-1.0
Reaction time mean minus median AUC1.52.02.61.61.5-1.0
Reaction time num false alarms0.30.40.6-0.8-0.7-0.4
Reaction time num false alarms AUC0.20.20.7-0.10.0-0.9
Reaction time trials correct on left0.50.71.00.80.6-1.0
Reaction time trials on left0.60.91.20.90.7-1.1
Reaction time mean0.10.10.20.30.20.4
Reaction time mean AUC0.10.10.40.20.10.6
Median of all reaction times0.20.20.6-0.2-0.30.8
Reaction time omissions1.01.42.01.41.2-0.8
Reaction time false alarm rate0.20.30.5-0.7-0.6-0.1
Reaction time premature initiation rate3.74.97.71.91.9-2.8
Reaction time premature initiations5.57.811.12.52.5-3.3
Std. dev. reaction times0.60.91.41.21.1-0.3
Reaction time trials completed0.60.91.20.90.7-1.1
Reaction time trials AUC0.40.50.80.70.5-0.9
Run reversals in cocaine runway, females0.30.30.30.60.6-0.3
Run reversals in cocaine runway, males0.20.20.3-0.5-0.6-0.3
Latency to leave start box in cocaine runway0.20.20.4-0.3-0.10.6
Latency to leave start box in cocaine runway, F0.00.00.10.00.20.3
Latency to leave start box in cocaine runway, M0.10.10.1-0.3-0.30.3
Std. dev. time between licks in bursts0.40.51.0-0.3-0.5-1.0
Total sessions with >9 infusions2.22.42.5-1.5-1.61.6
Short access day 1 total inactive lever presses4.85.36.1-2.3-2.52.2
Short access day 10 total inactive lever presses3.53.94.9-2.2-2.21.4
Short access day 1 total infusions3.94.25.3-1.8-2.02.3
Short access day 10 total infusions2.83.15.5-1.4-1.42.3
Short access total infusions2.02.23.1-1.3-1.41.8
Short access day 1 locomotion2.93.13.3-1.8-1.71.8
Short access day 10 total locomotion2.12.42.8-1.5-1.51.7
Short access total locomotion1.61.71.9-1.3-1.31.4
One hour access (0.3 mA shock)11.413.313.9-3.7-3.73.5
Compulsive drug intake3.63.74.91.71.8-2.2
One hour access (shock baseline)11.212.913.9-3.5-3.63.7
Social response proportion0.91.01.31.01.2-0.8
Social responses0.30.40.70.40.6-0.8
Social time0.70.91.60.80.7-1.3
Soleus weight4.011.813.4-3.7-3.73.0
Bone: stiffness2.23.54.82.22.2-0.9
Tibialis anterior weight11.539.343.86.66.5-5.6
Time to tail flick, vehicle, before self-admin0.50.50.90.70.90.1
Time to tail flick, vehicle, after self-admin1.31.41.61.31.3-1.0
Time to tail flick, test, before self-admin1.01.01.3-0.8-0.91.1
Time to tail flick, test, after self-admin0.00.00.00.20.0-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.50.70.5-0.7
Delta time to tail flick, test, before/after SA1.91.72.31.21.2-1.5
Tibia length0.92.53.41.81.8-0.9
Ambulatory time before self-admin0.30.30.40.70.60.1
Ambulatory time after self-admin0.30.30.7-0.3-0.40.9
Bone: tissue strength0.00.00.10.1-0.10.3
Total heroin consumption5.96.97.62.82.7-2.4
Bone: trabecular number0.30.50.80.70.90.3
Bone: trabecular spacing0.10.20.3-0.5-0.5-0.0
Bone: trabecular thickness0.80.91.3-0.9-0.81.2
Bone: trabecular tissue density3.44.85.7-2.4-2.31.9
Water consumed over 24 hours0.91.11.11.11.0-1.1
Number of responses in last shaping day1.11.21.6-1.3-1.30.5