Aspg

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Aspg 0.03 0.03 1.1e-04 0.04 0.04 0.02 0.04 3.1e-05 8.5e-05 1.3e-03 9.9e-05
2 Brain gene expression Aspg 0.04 0.04 4.3e-03 0.02 0.01 0 0.01 1.2e-02 5.9e-02 1.2e-01 3.8e-02
3 Eye gene expression Aspg 0.91 0.06 2.9e-08 0.25 0.33 0.33 0.33 8.8e-05 5.5e-06 4.4e-06 5.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.60.4-0.5
Area under the delay curve0.20.30.40.60.5-0.2
BMI with tail3.612.413.53.33.6-3.7
BMI without tail1.58.19.62.43.0-3.1
Body weight0.20.71.7-1.3-0.5-0.0
Weight adjusted by age0.10.20.5-0.7-0.2-0.1
Bone surface0.20.30.30.60.5-0.5
Bone volume0.20.30.40.50.6-0.6
Breakpoint value in progressive ratio session0.00.00.10.20.10.3
Number of licking bursts0.00.10.10.1-0.30.2
Context. condit. distance diff. score1.92.33.2-1.8-1.41.3
Locomotion velocity, session 10.10.10.1-0.3-0.40.3
Locomotion distance, session 10.50.71.21.10.8-0.5
Locomotion velocity, session 20.00.00.0-0.2-0.20.1
Locomotion distance, session 20.30.50.60.70.8-0.6
Locomotion velocity, session 30.10.10.20.40.3-0.2
Locomotion distance, session 30.00.00.10.1-0.20.3
Stereotopy head waving bouts, day 30.20.20.3-0.4-0.30.6
Stereotopy head waving duration, day 30.30.40.5-0.7-0.40.7
Locomotion velocity, session 70.20.20.40.60.3-0.2
Locomotion distance, session 70.50.70.80.90.8-0.8
Stereotopy head waving bouts, day 70.60.70.8-0.9-0.90.7
Stereotopy head waving duration, day 70.30.40.4-0.7-0.70.5
Locomotion velocity, session 80.30.30.7-0.8-0.50.4
Locomotion distance, session 80.10.10.1-0.20.4-0.4
Degree of sensitization distance0.10.10.10.30.1-0.2
Degree of sensitization stereotypy0.20.20.4-0.3-0.60.4
Conditioned locomotion1.41.62.0-1.4-1.21.2
Cocaine response after cond. corrected0.30.50.60.60.8-0.7
Cocaine response after cond. not corrected1.32.02.11.41.5-1.3
Cocaine response before conditioning2.53.03.41.81.7-1.7
Saline control response0.20.20.50.20.4-0.7
Bone: connectivity density0.00.00.0-0.0-0.1-0.1
Bone: cortical apparent density7.511.812.6-3.4-3.53.4
Bone: cortical area0.40.71.0-1.0-0.70.8
Bone: cortical porosity0.10.10.3-0.5-0.10.0
Bone: cortical porosity0.20.20.30.20.5-0.6
Bone: cortical thickness0.60.91.0-1.0-0.91.0
Bone: cortical thickness0.81.01.5-1.2-0.90.8
Bone: cortical tissue density7.311.612.3-3.3-3.53.3
Condit. Reinf. active minus inactive responses0.50.60.80.70.9-0.6
Condit. Reinf. active-inactive response ratio2.52.73.11.61.8-1.6
Condit. Reinf. active responses0.10.10.20.20.5-0.3
Condit. Reinf. inactive responses1.92.52.7-1.5-1.61.6
Incentive salience index mean0.50.60.70.80.9-0.6
Condit. Reinf. lever presses0.10.20.20.50.4-0.3
Condit. Reinf. active minus inactive responses0.20.30.4-0.7-0.60.4
Condit. Reinf. active-inactive response ratio0.30.40.7-0.8-0.60.5
Condit. Reinf. active responses0.00.00.00.10.1-0.2
Condit. Reinf. inactive responses0.60.80.90.90.9-0.9
Condit. Reinf. lever presses1.62.32.61.31.6-1.6
Condit. Reinf. lever reinforcers received0.00.00.1-0.00.1-0.3
Conditioned reinforcement - actives0.20.91.0-0.9-1.01.0
Conditioned reinforcement - inactives0.10.20.3-0.3-0.50.4
Conditioned locomotion0.30.50.70.50.8-0.8
Patch foraging indifference point 0 sec2.15.87.5-2.7-2.32.2
Patch foraging indifference point AUC1.12.63.4-1.2-1.81.8
Delay disc. indifference point, 0s delay0.20.20.3-0.4-0.20.6
Delay disc. indifference point, 16s delay0.10.10.20.40.4-0.0
Delay disc. indifference point, 2s delay0.30.40.60.80.7-0.1
Delay disc. indifference point, 24s delay0.20.30.50.70.5-0.2
Delay disc. indifference point, 4s delay0.10.10.2-0.4-0.20.5
Delay disc. indifference point, 8s delay0.20.40.50.70.6-0.5
Indifference point function ln k0.30.81.7-1.3-0.70.3
Indifference point function log k0.30.81.7-1.3-0.70.3
Patch foraging total patch changes 0 sec2.26.58.3-2.9-2.52.3
Patch foraging total patch changes 12 sec4.05.45.7-2.3-2.42.3
Patch foraging total patch changes 18 sec1.02.43.5-1.1-1.51.9
Patch foraging total patch changes 24 sec0.10.30.3-0.5-0.50.5
Patch foraging total patch changes 6 sec2.23.84.5-2.1-1.91.8
Patch foraging time to switch 0 sec4.316.517.94.14.2-3.9
Patch foraging water rate 0 sec8.030.231.7-5.6-5.65.3
Patch foraging water rate 12 sec3.815.518.9-4.4-3.93.5
Patch foraging water rate 18 sec3.06.88.2-2.6-2.92.4
Patch foraging water rate 24 sec3.95.57.2-2.7-2.41.9
Patch foraging water rate 6 sec4.87.18.4-2.9-2.62.4
Seeking ratio, delayed vs. immediate footshock0.20.20.4-0.6-0.20.6
Distance traveled before self-admin0.20.40.50.70.3-0.7
Distance traveled after self-admin0.10.20.3-0.4-0.50.1
Extensor digitorum longus weight5.622.227.1-5.2-4.74.2
Bone: elastic displacement0.30.40.5-0.5-0.70.7
Bone: elastic work0.10.10.1-0.2-0.30.4
Bone: endosteal estimation0.40.91.20.71.1-1.1
Bone: endosteal perimeter0.10.20.40.00.6-0.4
Epididymis fat weight1.89.09.63.13.0-2.9
Delta time in closed arm before/after self-admin0.10.10.1-0.20.2-0.4
Delta time in open arm before/after self-admin0.60.71.0-0.4-1.01.0
Diff in mean of infusions in LGA sessions0.00.00.00.10.00.1
Delay discount exponential model param0.20.20.4-0.6-0.50.3
Extinction: sum of active levers before priming0.20.40.60.70.6-0.4
Active lever presses in extinction session 61.41.42.1-1.4-1.10.9
Bone: final force0.10.20.3-0.6-0.20.3
Bone: final moment0.10.10.3-0.6-0.20.3
Food consumed during 24 hour testing period0.00.10.2-0.4-0.20.1
Glucose0.91.51.8-1.0-1.21.3
Heart weight0.71.11.7-0.9-1.31.0
Delay discount hyperbolic model param0.10.20.3-0.6-0.50.2
Intermittent access intake day 1-15 change0.52.83.21.71.8-1.5
Intermittent access intake escalation0.52.62.91.71.7-1.4
Intermittent access intake escalation 20.50.81.11.10.9-0.7
Intermitt. access day 1 inactive lever presses0.00.50.7-0.6-0.80.6
Intermitt. access day 15 inactive lever presses0.31.82.6-1.2-1.61.1
Intermitt. access escalation Index0.10.40.8-0.9-0.50.5
Intermittent access day 1 total infusions0.10.40.40.70.7-0.6
Intermittent access day 15 total infusions0.71.72.01.41.4-1.1
Intermittent access terminal intake (last 3 days)1.22.02.41.61.4-1.3
Intermittent access total infusions0.70.80.90.90.9-0.8
Intermittent access day 1 locomotion1.22.32.61.41.6-1.5
Intermittent access day 15 total locomotion0.10.30.50.60.7-0.3
Intermittent access total locomotion0.81.01.31.11.1-0.8
Intermittent access standard deviation0.62.93.31.61.7-1.8
Left kidney weight0.53.76.1-2.5-1.71.4
Right kidney weight0.53.35.3-2.3-1.71.3
Cocaine induced anxiety1.23.23.5-1.7-1.91.8
Post-drug Anxiety4.34.95.4-2.0-2.32.3
Baseline Anxiety0.00.10.20.40.1-0.0
Tail length2.513.617.4-4.2-3.63.2
Length with tail5.624.729.9-5.5-5.04.4
Length without tail1.89.310.9-3.3-3.22.6
Times rat made contact with spout0.40.50.8-0.6-0.60.9
Lifetime Intake0.30.40.50.60.7-0.6
Liver weight, left2.23.84.8-2.2-1.91.7
Liver weight, right0.40.81.30.60.7-1.1
Locomotor activity0.10.20.2-0.5-0.20.5
Locomotor testing distance0.10.30.5-0.6-0.20.7
Locomotor testing rearing0.62.43.01.71.6-1.2
Locomotion in novel chamber2.83.75.6-2.4-1.81.5
Locomotion in novel chamber post-restriction0.00.10.20.30.0-0.4
Fecal boli incidents, locomotor time 11.12.93.61.91.7-1.5
Change in fecal boli incidents, locomotor task1.01.03.0-1.7-0.4-0.0
Time >=10cm from walls, locomotor time 10.20.30.50.00.6-0.7
Bouts of movement, locomotor time 11.62.03.51.91.1-1.2
Total resting periods, locomotor time 11.72.03.21.81.1-1.2
Rest time, locomotor task time 10.10.20.30.2-0.50.6
Distance moved, locomotor task time 10.10.20.4-0.20.5-0.7
Vertical activity count, locomotor time 10.10.70.8-0.8-0.90.8
Time >=10cm from walls, locomotor time 20.20.40.6-0.4-0.80.8
Bouts of movement, locomotor time 20.51.51.7-1.2-1.31.2
Total resting periods, locomotor time 20.31.21.4-1.0-1.21.1
Rest time, locomotor task time 20.20.30.3-0.5-0.50.6
Distance moved, locomotor task time 20.10.20.30.40.4-0.5
Vertical activity count, locomotor time 20.20.51.0-0.2-1.00.7
Light reinforcement 10.00.00.1-0.40.1-0.0
Light reinforcement 20.81.82.21.31.5-1.2
Bone: marrow area0.30.81.00.61.0-1.0
Bone: maximum diameter0.00.00.0-0.10.20.0
Bone: maximum force0.00.00.1-0.40.00.1
Bone: maximum moment0.00.00.1-0.30.2-0.0
Mean time between licks in bursts0.20.91.30.41.1-1.2
Mean num. licks in bursts0.00.10.2-0.4-0.00.2
Cd content in liver0.10.10.1-0.20.0-0.4
Co content in liver1.01.11.2-1.1-1.11.1
Cu content in liver0.50.60.70.80.8-0.6
Fe content in liver0.20.30.50.40.7-0.5
K content in liver0.70.71.0-1.0-0.70.8
Mg content in liver0.60.71.1-1.1-0.60.7
Mn content in liver0.20.20.3-0.00.5-0.6
Na content in liver0.00.00.00.10.10.1
Rb content in liver0.80.91.2-1.1-0.80.9
Se content in liver0.20.20.3-0.00.5-0.6
Sr content in liver0.10.10.2-0.4-0.30.2
Zn content in liver1.41.61.9-1.4-1.31.2
Bone: minimum diameter0.40.71.4-1.2-0.60.6
Time in familiar zone, hab. session 10.20.30.40.50.4-0.6
Time in novel zone, hab. session 10.10.20.20.50.5-0.2
Total zone transitions, hab. session 10.71.01.30.61.1-1.1
Total locomotion distance, hab. session 10.10.10.4-0.6-0.0-0.2
Locomotion velocity, hab. session 10.50.71.4-1.2-0.60.4
Time in familiar zone, hab. session 20.30.40.70.30.5-0.8
Time in novel zone, hab. session 20.10.10.10.30.4-0.1
Total zone transitions, hab. session 20.70.91.20.91.1-0.9
Total locomotion distance, hab. session 20.40.50.6-0.8-0.60.7
Locomotion velocity, hab. session 20.60.80.9-1.0-0.80.9
Novel to familiar place preference ratio0.50.71.31.10.8-0.4
Novelty place preference0.30.40.90.90.6-0.3
Time in novel zone, NPP test0.30.40.80.90.6-0.3
Total zone transitions, NPP test0.20.30.40.30.6-0.6
Total locomotion distance, NPP test0.00.00.1-0.20.1-0.0
Locomotion velocity, NPP test0.00.00.1-0.30.00.1
Intraocular pressure0.10.10.30.50.1-0.2
Delta distance traveled before/after self-admin0.00.00.0-0.10.2-0.2
Delta ambulatory time before/after self-admin0.30.50.8-0.9-0.60.6
Parametrial fat weight0.40.91.20.71.0-1.1
Pavlov. Cond. lever latency0.60.70.9-1.0-0.90.7
Pavlov. Cond. magazine entry latency0.70.91.11.00.9-0.9
Pavlov. Cond. change in total contacts0.20.30.30.60.5-0.4
Pavlov. Cond. index score1.11.31.71.31.1-1.0
Pavlov. Cond. latency score0.70.91.21.11.0-0.8
Pavlov. Cond. lever contacts1.01.31.71.31.1-0.9
Pavlov. Cond. magazine entry number1.11.41.4-1.2-1.21.2
Pavlov. Cond. intertrial magazine entries5.76.87.8-2.8-2.62.4
Pavlov. Cond. lever-magazine prob. diff.0.81.11.41.21.0-0.9
Pavlov. Cond. response bias1.72.12.11.51.5-1.4
Pavlov. Cond. lever latency2.23.13.7-1.4-1.91.9
Pavlov. Cond. magazine entry latency4.15.86.72.22.4-2.6
Pavlov. Cond. change in total contacts2.25.45.52.32.3-2.3
Pavlov. Cond. index score4.26.67.72.32.7-2.8
Pavlov. Cond. latency score4.16.57.32.32.6-2.7
Pavlov. Cond. lever contacts2.94.24.91.72.2-2.2
Pavlov. Cond. magazine entry number3.74.85.7-2.0-2.22.4
Pavlov. Cond. intertrial magazine entries3.47.57.7-2.7-2.82.8
Pavlov. Cond. lever-magazine prob. diff.4.77.28.12.42.8-2.9
Pavlov. Cond. response bias3.85.36.41.92.4-2.5
Time in closed arm before self-admin1.62.84.22.11.5-1.3
Time in closed arm after self-admin0.91.01.00.91.0-1.0
Time in open arm before self-admin2.53.04.9-2.2-1.71.2
Time in open arm after self-admin2.32.63.2-1.6-1.81.4
Bone: periosteal estimation0.00.10.1-0.30.2-0.1
Bone: periosteal perimeter0.00.10.1-0.20.4-0.1
Bone: post-yield work0.81.41.8-1.3-1.21.0
Progressive ratio test 1 active lever presses0.10.20.30.60.3-0.4
Progressive ratio test 1 breakpoint0.20.30.50.70.4-0.5
Progressive ratio test 1 inactive lever presses0.71.92.3-1.4-1.51.2
Progressive ratio test 2 active lever presses0.10.10.1-0.2-0.30.4
Progressive ratio test 2 breakpoint0.10.10.1-0.2-0.30.4
Progressive ratio test 2 inactive lever presses0.31.11.6-0.7-1.31.1
Incentive Sensitization - Responses0.00.10.2-0.3-0.30.4
Incentive Sensitization - Breakpoint0.10.20.2-0.4-0.40.5
Sum of active levers in priming session hrs 5-60.20.20.2-0.3-0.40.5
Progressive ratio0.10.40.9-0.9-0.40.4
Food seeking constrained by brief footshock1.31.62.8-0.5-1.31.7
Seeking ratio, punishment vs. effort0.10.20.30.6-0.20.4
Retroperitoneal fat weight0.10.40.40.60.6-0.7
Reaction time number correct1.45.15.6-2.2-2.42.1
Reaction time mean minus median0.00.30.40.60.4-0.5
Reaction time mean minus median AUC0.00.30.30.60.4-0.6
Reaction time num false alarms0.81.41.8-1.4-0.91.2
Reaction time num false alarms AUC0.92.02.6-1.6-1.21.4
Reaction time trials correct on left1.45.15.6-2.2-2.42.1
Reaction time trials on left1.55.05.6-2.2-2.42.1
Reaction time mean0.61.41.51.21.1-1.1
Reaction time mean AUC0.40.91.01.00.9-0.9
Median of all reaction times0.50.70.80.80.9-0.9
Reaction time omissions0.20.30.6-0.4-0.80.6
Reaction time false alarm rate0.10.10.2-0.5-0.00.3
Reaction time premature initiation rate0.81.21.3-1.1-1.01.1
Reaction time premature initiations1.33.94.1-2.0-2.01.9
Std. dev. reaction times0.20.70.80.90.7-0.8
Reaction time trials completed1.55.05.6-2.2-2.42.1
Reaction time trials AUC1.65.56.2-2.3-2.52.2
Run reversals in cocaine runway, females0.60.60.91.00.7-0.6
Run reversals in cocaine runway, males0.91.01.5-0.5-1.21.2
Latency to leave start box in cocaine runway0.10.10.30.30.5-0.2
Latency to leave start box in cocaine runway, F0.10.10.20.50.40.1
Latency to leave start box in cocaine runway, M0.10.10.2-0.00.4-0.3
Std. dev. time between licks in bursts0.51.01.50.31.2-1.2
Total sessions with >9 infusions0.20.20.30.30.5-0.5
Short access day 1 total inactive lever presses0.00.00.1-0.2-0.10.0
Short access day 10 total inactive lever presses0.00.10.10.0-0.2-0.4
Short access day 1 total infusions0.20.30.4-0.6-0.40.6
Short access day 10 total infusions0.40.70.70.80.8-0.8
Short access total infusions0.20.20.30.30.6-0.5
Short access day 1 locomotion0.20.30.40.40.6-0.6
Short access day 10 total locomotion0.83.33.71.91.9-1.7
Short access total locomotion0.20.30.40.70.6-0.4
One hour access (0.3 mA shock)0.00.00.1-0.1-0.30.2
Compulsive drug intake0.00.00.1-0.2-0.20.0
One hour access (shock baseline)0.00.00.0-0.20.00.0
Social response proportion0.40.60.9-1.0-0.70.5
Social responses0.00.00.0-0.00.2-0.2
Social time0.71.11.9-1.4-1.00.7
Soleus weight0.00.10.2-0.30.2-0.5
Bone: stiffness0.71.21.8-1.3-0.91.0
Tibialis anterior weight0.20.81.0-1.0-0.90.7
Time to tail flick, vehicle, before self-admin0.20.30.4-0.6-0.50.5
Time to tail flick, vehicle, after self-admin0.20.40.80.30.6-0.9
Time to tail flick, test, before self-admin0.10.10.10.4-0.20.2
Time to tail flick, test, after self-admin0.91.01.2-1.1-1.10.8
Delta time to tail flick, vehicle, before/after SA0.00.00.00.10.1-0.1
Delta time to tail flick, test, before/after SA0.60.81.7-1.3-0.70.4
Tibia length0.30.91.5-0.6-0.91.2
Ambulatory time before self-admin0.20.61.11.00.5-0.8
Ambulatory time after self-admin0.10.10.20.40.1-0.4
Bone: tissue strength0.20.20.40.1-0.30.6
Total heroin consumption2.42.83.6-1.4-1.71.9
Bone: trabecular number0.00.00.00.0-0.1-0.1
Bone: trabecular spacing0.00.00.0-0.00.1-0.2
Bone: trabecular thickness0.00.10.10.30.2-0.2
Bone: trabecular tissue density0.10.20.5-0.1-0.40.7
Water consumed over 24 hours1.83.53.8-1.9-1.72.0
Number of responses in last shaping day0.10.20.30.10.5-0.5