Aspg

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Aspg 0.02 0.02 1.1e-03 0.02 0.03 0.02 0.03 1.4e-03 5.4e-04 2.2e-03 7.7e-04
2 Brain gene expression Aspg 0.04 0.04 3.1e-03 0.04 0.02 0.03 0.04 1.8e-04 2.8e-03 7.9e-04 2.5e-04
3 Eye gene expression Aspg 0.92 0.06 1.9e-08 0.29 0.31 0.29 0.29 2.6e-05 1.1e-05 2.3e-05 2.0e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.1-0.10.30.3
Area under the delay curve0.10.10.2-0.20.40.2
BMI with tail2.27.28.2-2.92.62.6
BMI without tail0.61.21.5-1.10.91.2
Body weight0.20.81.61.3-0.9-0.1
Weight adjusted by age0.10.10.20.5-0.10.2
Bone surface0.00.10.1-0.20.30.3
Bone volume0.00.10.1-0.10.30.4
Breakpoint value in progressive ratio session0.10.10.3-0.50.2-0.2
Number of licking bursts0.10.10.2-0.1-0.5-0.4
Context. condit. distance diff. score1.82.24.02.0-1.2-1.0
Locomotion velocity, session 10.10.10.20.4-0.4-0.4
Locomotion distance, session 10.50.60.8-0.90.90.6
Locomotion velocity, session 20.00.00.10.0-0.3-0.2
Locomotion distance, session 20.30.50.5-0.60.70.7
Locomotion velocity, session 30.10.20.3-0.40.50.3
Locomotion distance, session 30.00.00.00.10.0-0.1
Stereotopy head waving bouts, day 30.10.20.30.3-0.4-0.5
Stereotopy head waving duration, day 30.20.30.30.4-0.6-0.6
Locomotion velocity, session 70.10.20.2-0.50.40.3
Locomotion distance, session 70.70.90.9-0.90.90.9
Stereotopy head waving bouts, day 71.11.21.51.2-1.1-0.9
Stereotopy head waving duration, day 70.40.50.50.7-0.7-0.6
Locomotion velocity, session 80.30.40.80.9-0.5-0.2
Locomotion distance, session 80.20.20.40.40.40.6
Degree of sensitization distance0.10.10.2-0.40.10.2
Degree of sensitization stereotypy0.20.20.30.5-0.5-0.4
Conditioned locomotion1.41.72.11.3-1.5-1.2
Cocaine response after cond. corrected0.40.51.1-1.00.30.5
Cocaine response after cond. not corrected1.71.82.7-1.61.21.2
Cocaine response before conditioning2.63.24.4-1.52.11.7
Saline control response0.20.30.6-0.20.50.8
Bone: connectivity density0.10.10.30.6-0.1-0.0
Bone: cortical apparent density8.411.111.93.2-3.3-3.5
Bone: cortical area0.71.11.60.7-1.0-1.3
Bone: cortical porosity0.10.10.20.50.00.3
Bone: cortical porosity0.30.30.7-0.00.50.8
Bone: cortical thickness0.71.22.00.6-1.1-1.4
Bone: cortical thickness0.60.70.90.9-0.8-0.7
Bone: cortical tissue density8.511.212.03.2-3.4-3.5
Condit. Reinf. active minus inactive responses0.60.70.9-0.90.90.6
Condit. Reinf. active-inactive response ratio2.73.03.4-1.81.91.5
Condit. Reinf. active responses0.20.20.3-0.50.50.3
Condit. Reinf. inactive responses1.72.12.31.4-1.5-1.5
Incentive salience index mean0.60.70.9-0.91.00.6
Condit. Reinf. lever presses0.10.20.2-0.50.50.2
Condit. Reinf. active minus inactive responses0.50.61.11.0-0.8-0.4
Condit. Reinf. active-inactive response ratio0.50.50.90.9-0.6-0.5
Condit. Reinf. active responses0.00.10.10.3-0.20.2
Condit. Reinf. inactive responses0.40.50.8-0.80.50.9
Condit. Reinf. lever presses1.31.82.8-1.11.21.7
Condit. Reinf. lever reinforcers received0.10.10.20.4-0.30.3
Conditioned reinforcement - actives2.22.22.51.5-1.6-1.4
Conditioned reinforcement - inactives0.40.40.50.7-0.7-0.5
Conditioned locomotion0.60.71.0-0.70.91.0
Patch foraging indifference point 0 sec3.96.26.92.5-2.6-2.3
Patch foraging indifference point AUC2.62.93.81.5-1.7-1.9
Delay disc. indifference point, 0s delay0.10.10.20.5-0.2-0.2
Delay disc. indifference point, 16s delay0.10.10.1-0.30.3-0.0
Delay disc. indifference point, 2s delay0.20.20.3-0.60.60.0
Delay disc. indifference point, 24s delay0.10.10.2-0.40.30.1
Delay disc. indifference point, 4s delay0.20.20.30.5-0.4-0.3
Delay disc. indifference point, 8s delay0.20.20.2-0.20.50.4
Indifference point function ln k0.71.01.71.3-1.1-0.3
Indifference point function log k0.71.01.71.3-1.1-0.3
Patch foraging total patch changes 0 sec4.37.07.62.7-2.8-2.4
Patch foraging total patch changes 12 sec4.35.56.32.2-2.5-2.3
Patch foraging total patch changes 18 sec2.02.53.11.3-1.7-1.8
Patch foraging total patch changes 24 sec0.30.30.30.5-0.6-0.6
Patch foraging total patch changes 6 sec2.43.54.01.6-1.9-2.0
Patch foraging time to switch 0 sec10.916.817.6-4.14.24.0
Patch foraging water rate 0 sec18.629.829.95.5-5.5-5.5
Patch foraging water rate 12 sec9.314.316.84.1-3.9-3.3
Patch foraging water rate 18 sec4.76.47.52.7-2.5-2.3
Patch foraging water rate 24 sec3.75.16.32.5-2.3-2.0
Patch foraging water rate 6 sec4.97.17.82.7-2.8-2.5
Seeking ratio, delayed vs. immediate footshock0.20.20.30.6-0.3-0.3
Distance traveled before self-admin0.10.10.3-0.6-0.1-0.2
Distance traveled after self-admin0.50.50.70.8-0.9-0.5
Extensor digitorum longus weight5.622.228.25.3-4.8-4.0
Bone: elastic displacement0.50.60.60.8-0.8-0.7
Bone: elastic work0.10.10.10.3-0.3-0.3
Bone: endosteal estimation0.20.51.0-0.30.71.0
Bone: endosteal perimeter0.00.00.0-0.20.20.2
Epididymis fat weight4.29.79.9-3.13.13.1
Delta time in closed arm before/after self-admin0.10.00.10.00.10.4
Delta time in open arm before/after self-admin0.40.40.50.5-0.6-0.7
Diff in mean of infusions in LGA sessions0.10.10.2-0.2-0.2-0.4
Delay discount exponential model param0.00.00.10.1-0.3-0.1
Extinction: sum of active levers before priming0.10.10.1-0.30.2-0.2
Active lever presses in extinction session 61.11.11.61.3-1.0-0.9
Bone: final force0.20.30.40.6-0.5-0.4
Bone: final moment0.20.30.50.7-0.5-0.4
Food consumed during 24 hour testing period0.10.10.40.6-0.1-0.0
Glucose0.81.32.00.8-1.0-1.4
Heart weight0.00.00.10.1-0.20.1
Delay discount hyperbolic model param0.10.10.10.2-0.4-0.2
Intermittent access intake day 1-15 change1.21.21.7-1.31.00.9
Intermittent access intake escalation1.51.41.8-1.31.21.1
Intermittent access intake escalation 20.20.20.4-0.60.40.2
Intermitt. access day 1 inactive lever presses2.72.83.51.9-1.7-1.5
Intermitt. access day 15 inactive lever presses1.11.21.61.1-1.2-0.9
Intermitt. access escalation Index0.30.20.30.5-0.3-0.6
Intermittent access day 1 total infusions0.30.40.5-0.50.60.7
Intermittent access day 15 total infusions1.71.92.0-1.41.41.3
Intermittent access terminal intake (last 3 days)1.71.82.4-1.61.11.3
Intermittent access total infusions0.50.60.7-0.80.70.8
Intermittent access day 1 locomotion0.90.91.2-0.81.01.1
Intermittent access day 15 total locomotion0.30.30.6-0.40.60.7
Intermittent access total locomotion0.40.50.6-0.60.70.8
Intermittent access standard deviation3.33.54.1-2.01.81.7
Left kidney weight1.02.74.52.1-1.8-0.8
Right kidney weight0.51.52.81.7-1.2-0.3
Cocaine induced anxiety2.83.33.81.6-1.9-1.9
Post-drug Anxiety2.42.63.51.3-1.7-1.9
Baseline Anxiety1.51.61.8-1.41.31.1
Tail length3.19.512.53.5-3.2-2.4
Length with tail4.416.222.04.7-4.1-3.1
Length without tail2.14.66.42.5-2.1-1.8
Times rat made contact with spout0.30.30.80.3-0.3-0.9
Lifetime Intake0.30.30.4-0.50.50.6
Liver weight, left2.94.65.41.9-2.3-2.2
Liver weight, right0.00.10.20.1-0.4-0.1
Locomotor activity0.10.20.30.5-0.3-0.3
Locomotor testing distance0.30.60.70.8-0.7-0.8
Locomotor testing rearing1.01.62.4-1.51.20.9
Locomotion in novel chamber5.66.98.12.9-2.8-2.2
Locomotion in novel chamber post-restriction0.20.20.5-0.10.30.7
Fecal boli incidents, locomotor time 12.22.42.9-1.71.51.4
Change in fecal boli incidents, locomotor task0.80.81.91.4-0.70.1
Time >=10cm from walls, locomotor time 10.40.40.7-0.50.60.8
Bouts of movement, locomotor time 11.41.52.1-1.51.21.0
Total resting periods, locomotor time 11.31.41.9-1.41.11.1
Rest time, locomotor task time 10.30.40.70.0-0.8-0.7
Distance moved, locomotor task time 10.30.30.6-0.40.80.4
Vertical activity count, locomotor time 10.50.51.00.7-0.3-1.0
Time >=10cm from walls, locomotor time 20.70.71.00.7-1.0-0.9
Bouts of movement, locomotor time 21.71.82.01.4-1.4-1.2
Total resting periods, locomotor time 21.31.41.61.2-1.2-1.0
Rest time, locomotor task time 20.20.30.40.4-0.6-0.6
Distance moved, locomotor task time 20.20.20.3-0.50.60.2
Vertical activity count, locomotor time 20.50.51.00.4-0.6-1.0
Light reinforcement 10.00.00.00.10.20.1
Light reinforcement 21.92.63.0-1.71.71.4
Bone: marrow area0.20.50.8-0.30.70.9
Bone: maximum diameter0.10.10.2-0.3-0.1-0.5
Bone: maximum force0.20.30.30.6-0.6-0.6
Bone: maximum moment0.10.30.30.6-0.5-0.4
Mean time between licks in bursts0.81.21.8-0.91.01.3
Mean num. licks in bursts0.00.10.10.20.3-0.0
Cd content in liver0.70.81.81.4-0.60.1
Co content in liver0.91.01.51.2-1.0-0.7
Cu content in liver1.11.32.2-1.51.10.8
Fe content in liver0.20.20.4-0.60.50.1
K content in liver0.10.10.20.3-0.2-0.4
Mg content in liver0.10.10.10.4-0.2-0.4
Mn content in liver0.10.20.40.70.00.2
Na content in liver0.10.20.4-0.60.1-0.3
Rb content in liver0.70.91.41.2-0.8-0.8
Se content in liver0.20.20.3-0.30.60.6
Sr content in liver0.20.20.40.6-0.3-0.2
Zn content in liver0.10.10.20.4-0.2-0.4
Bone: minimum diameter0.61.11.61.3-1.0-0.8
Time in familiar zone, hab. session 10.30.30.5-0.20.50.7
Time in novel zone, hab. session 10.20.20.3-0.50.40.3
Total zone transitions, hab. session 10.71.01.6-0.51.11.3
Total locomotion distance, hab. session 10.20.20.50.7-0.00.3
Locomotion velocity, hab. session 10.40.61.31.2-0.7-0.4
Time in familiar zone, hab. session 20.30.30.4-0.40.60.7
Time in novel zone, hab. session 20.10.10.1-0.30.20.3
Total zone transitions, hab. session 20.91.11.4-1.01.21.0
Total locomotion distance, hab. session 20.30.30.40.7-0.5-0.6
Locomotion velocity, hab. session 20.40.50.70.8-0.7-0.7
Novel to familiar place preference ratio0.40.40.6-0.80.60.5
Novelty place preference0.20.20.4-0.60.40.4
Time in novel zone, NPP test0.20.20.2-0.50.40.4
Total zone transitions, NPP test0.30.40.80.10.60.9
Total locomotion distance, NPP test0.10.10.20.50.00.3
Locomotion velocity, NPP test0.10.10.30.5-0.10.2
Intraocular pressure0.10.10.1-0.20.30.4
Delta distance traveled before/after self-admin0.10.20.30.6-0.00.3
Delta ambulatory time before/after self-admin0.60.61.61.3-0.6-0.2
Parametrial fat weight0.00.00.0-0.20.20.0
Pavlov. Cond. lever latency0.70.91.11.0-1.0-0.8
Pavlov. Cond. magazine entry latency0.40.60.6-0.80.80.7
Pavlov. Cond. change in total contacts0.20.20.3-0.50.50.4
Pavlov. Cond. index score1.01.21.4-1.21.11.0
Pavlov. Cond. latency score0.60.81.0-1.00.90.8
Pavlov. Cond. lever contacts0.91.01.6-1.31.00.7
Pavlov. Cond. magazine entry number1.01.31.41.1-1.2-1.2
Pavlov. Cond. intertrial magazine entries5.46.57.42.7-2.6-2.3
Pavlov. Cond. lever-magazine prob. diff.0.70.91.1-1.10.90.8
Pavlov. Cond. response bias1.21.41.5-1.21.21.1
Pavlov. Cond. lever latency2.12.93.81.4-1.7-1.9
Pavlov. Cond. magazine entry latency4.75.56.0-2.22.42.5
Pavlov. Cond. change in total contacts3.54.85.3-2.32.02.2
Pavlov. Cond. index score4.86.27.4-2.22.52.7
Pavlov. Cond. latency score4.75.96.6-2.22.52.6
Pavlov. Cond. lever contacts2.93.95.0-1.81.92.2
Pavlov. Cond. magazine entry number3.54.34.91.9-2.1-2.2
Pavlov. Cond. intertrial magazine entries5.67.47.92.7-2.8-2.6
Pavlov. Cond. lever-magazine prob. diff.5.26.67.6-2.32.62.7
Pavlov. Cond. response bias3.64.96.7-1.92.12.6
Time in closed arm before self-admin3.13.54.4-2.11.91.7
Time in closed arm after self-admin1.41.51.9-1.11.11.4
Time in open arm before self-admin5.45.86.92.6-2.5-2.1
Time in open arm after self-admin3.33.64.22.0-1.9-1.8
Bone: periosteal estimation0.00.10.10.3-0.3-0.2
Bone: periosteal perimeter0.00.00.0-0.0-0.2-0.2
Bone: post-yield work1.21.72.61.6-1.3-0.9
Progressive ratio test 1 active lever presses0.00.00.0-0.0-0.10.1
Progressive ratio test 1 breakpoint0.00.00.1-0.30.10.3
Progressive ratio test 1 inactive lever presses2.83.13.51.9-1.8-1.6
Progressive ratio test 2 active lever presses0.00.00.0-0.0-0.10.0
Progressive ratio test 2 breakpoint0.00.00.00.1-0.10.1
Progressive ratio test 2 inactive lever presses1.01.21.41.0-1.2-1.0
Incentive Sensitization - Responses0.00.00.00.0-0.00.1
Incentive Sensitization - Breakpoint0.00.00.00.1-0.10.1
Sum of active levers in priming session hrs 5-60.40.40.6-0.80.70.0
Progressive ratio0.30.30.50.6-0.4-0.7
Food seeking constrained by brief footshock1.51.82.61.0-1.4-1.6
Seeking ratio, punishment vs. effort0.10.10.20.2-0.5-0.3
Retroperitoneal fat weight0.20.70.9-0.90.80.8
Reaction time number correct3.65.26.22.2-2.5-2.1
Reaction time mean minus median0.20.20.4-0.30.20.7
Reaction time mean minus median AUC0.20.20.6-0.20.20.8
Reaction time num false alarms1.01.41.41.2-1.2-1.1
Reaction time num false alarms AUC1.52.02.11.4-1.4-1.4
Reaction time trials correct on left3.65.26.22.2-2.5-2.1
Reaction time trials on left3.65.16.22.3-2.5-2.0
Reaction time mean0.91.31.8-1.01.01.3
Reaction time mean AUC0.60.81.4-0.70.81.2
Median of all reaction times0.50.71.2-0.70.81.1
Reaction time omissions1.01.42.01.4-1.4-0.6
Reaction time false alarm rate0.10.10.10.3-0.3-0.3
Reaction time premature initiation rate0.81.11.11.0-1.0-1.1
Reaction time premature initiations2.83.94.41.9-2.1-1.9
Std. dev. reaction times0.40.61.1-0.70.51.0
Reaction time trials completed3.65.16.22.3-2.5-2.0
Reaction time trials AUC3.95.66.72.3-2.6-2.2
Run reversals in cocaine runway, females1.00.91.3-1.10.90.8
Run reversals in cocaine runway, males0.90.91.40.6-1.0-1.2
Latency to leave start box in cocaine runway0.10.10.2-0.50.2-0.0
Latency to leave start box in cocaine runway, F0.10.10.4-0.60.1-0.2
Latency to leave start box in cocaine runway, M0.10.10.2-0.50.40.1
Std. dev. time between licks in bursts0.80.92.1-0.30.71.5
Total sessions with >9 infusions0.00.00.1-0.10.30.2
Short access day 1 total inactive lever presses0.00.10.10.20.00.4
Short access day 10 total inactive lever presses0.50.50.90.9-0.7-0.4
Short access day 1 total infusions0.20.30.40.6-0.5-0.5
Short access day 10 total infusions0.30.30.4-0.50.50.6
Short access total infusions0.20.20.2-0.40.40.5
Short access day 1 locomotion0.50.50.7-0.60.70.8
Short access day 10 total locomotion0.50.60.7-0.80.80.7
Short access total locomotion0.10.10.1-0.20.30.2
One hour access (0.3 mA shock)0.10.10.20.3-0.5-0.3
Compulsive drug intake0.00.00.00.00.20.2
One hour access (shock baseline)0.00.00.0-0.20.10.1
Social response proportion0.40.40.50.6-0.7-0.6
Social responses0.10.10.2-0.10.50.2
Social time1.01.32.31.5-1.2-0.5
Soleus weight0.00.10.30.30.10.5
Bone: stiffness1.21.92.31.5-1.4-1.3
Tibialis anterior weight0.41.21.61.1-1.3-0.9
Time to tail flick, vehicle, before self-admin0.50.50.60.8-0.6-0.6
Time to tail flick, vehicle, after self-admin0.10.20.4-0.00.20.6
Time to tail flick, test, before self-admin0.10.10.10.2-0.3-0.4
Time to tail flick, test, after self-admin1.71.81.91.4-1.4-1.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.00.00.3
Delta time to tail flick, test, before/after SA0.90.81.31.1-0.8-0.6
Tibia length0.30.91.30.6-1.0-1.1
Ambulatory time before self-admin0.20.20.6-0.8-0.1-0.3
Ambulatory time after self-admin0.00.00.0-0.10.00.1
Bone: tissue strength0.10.10.1-0.0-0.1-0.4
Total heroin consumption0.81.01.80.7-0.8-1.4
Bone: trabecular number0.10.10.20.5-0.2-0.1
Bone: trabecular spacing0.10.10.1-0.40.20.3
Bone: trabecular thickness0.10.10.20.3-0.2-0.4
Bone: trabecular tissue density0.40.51.20.2-0.6-1.1
Water consumed over 24 hours2.63.13.71.9-1.4-1.9
Number of responses in last shaping day0.50.50.6-0.70.70.8