Arhgap23

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA intron excision ratio chr10_82484497_82484899 0.08 0.05 2.1e-03 0.05 0.03 0.02 0.04 3.4e-03 2.7e-02 3.5e-02 1.1e-02
2 BLA gene expression Arhgap23 0.09 0.06 2.0e-03 0.06 0.03 0.06 0.05 4.3e-04 7.6e-03 6.0e-04 7.7e-04
3 Adipose gene expression Arhgap23 0.07 0.05 9.2e-07 0.06 0.05 0.05 0.06 3.5e-07 3.0e-06 2.7e-06 7.1e-07
4 pVTA intron excision ratio chr10_82484497_82486332 0.09 0.06 1.5e-03 0.05 0.04 0.05 0.04 4.5e-03 7.0e-03 3.9e-03 1.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.52.64.3-2.1-1.6-1.8-0.1
Area under the delay curve0.70.71.1-0.8-0.9-1.1-0.6
BMI with tail2.99.426.12.42.11.2-5.1
BMI without tail0.51.13.70.60.40.3-1.9
Body weight5.623.526.75.24.84.3-5.1
Weight adjusted by age0.30.30.40.60.50.70.5
Bone surface0.10.20.9-0.00.30.1-0.9
Bone volume0.20.41.3-0.5-0.1-0.3-1.2
Breakpoint value in progressive ratio session0.70.81.51.20.81.0-0.0
Number of licking bursts0.60.71.2-0.9-0.7-0.61.1
Context. condit. distance diff. score0.40.50.70.80.70.8-0.7
Locomotion velocity, session 10.91.01.20.91.10.8-1.1
Locomotion distance, session 13.03.85.52.32.32.0-0.4
Locomotion velocity, session 20.60.71.20.81.01.1-0.5
Locomotion distance, session 20.91.31.91.21.41.30.3
Locomotion velocity, session 30.10.10.20.40.40.2-0.3
Locomotion distance, session 30.60.71.00.80.91.00.5
Stereotopy head waving bouts, day 33.03.55.0-2.2-2.2-2.1-0.0
Stereotopy head waving duration, day 30.70.81.0-0.9-1.0-1.0-0.7
Locomotion velocity, session 70.40.51.01.00.70.60.2
Locomotion distance, session 70.30.41.30.40.10.51.1
Stereotopy head waving bouts, day 70.70.81.4-1.2-0.9-0.80.5
Stereotopy head waving duration, day 70.20.20.4-0.6-0.3-0.30.4
Locomotion velocity, session 85.66.78.72.92.82.7-1.7
Locomotion distance, session 81.52.23.01.61.71.7-0.4
Degree of sensitization distance0.10.10.20.50.30.4-0.3
Degree of sensitization stereotypy1.51.72.1-1.5-1.2-1.11.4
Conditioned locomotion0.10.10.2-0.3-0.4-0.4-0.5
Cocaine response after cond. corrected1.92.23.2-1.8-1.4-1.5-1.2
Cocaine response after cond. not corrected2.62.95.0-2.2-1.8-1.8-0.4
Cocaine response before conditioning1.61.94.4-1.1-1.3-0.72.1
Saline control response0.60.71.0-0.6-0.8-1.01.0
Bone: connectivity density2.23.45.0-2.2-2.0-2.00.9
Bone: cortical apparent density6.88.917.3-2.9-2.4-2.14.2
Bone: cortical area0.10.10.4-0.6-0.3-0.30.0
Bone: cortical porosity0.60.71.0-0.9-0.9-1.0-0.1
Bone: cortical porosity0.91.01.5-1.0-1.1-1.2-0.2
Bone: cortical thickness1.21.93.3-1.8-1.2-1.01.4
Bone: cortical thickness4.35.06.7-2.6-2.4-2.11.8
Bone: cortical tissue density6.99.117.8-2.9-2.4-2.04.2
Condit. Reinf. active minus inactive responses0.40.50.5-0.7-0.7-0.60.7
Condit. Reinf. active-inactive response ratio0.70.71.2-0.8-1.1-1.00.3
Condit. Reinf. active responses0.60.71.1-1.0-0.8-0.80.7
Condit. Reinf. inactive responses0.50.60.9-1.0-0.6-0.80.7
Incentive salience index mean1.31.51.8-1.3-1.2-1.21.2
Condit. Reinf. lever presses1.31.72.7-1.2-1.1-1.21.6
Condit. Reinf. active minus inactive responses0.60.81.5-0.8-0.9-1.20.4
Condit. Reinf. active-inactive response ratio0.20.30.6-0.5-0.4-0.80.1
Condit. Reinf. active responses1.11.52.3-1.1-1.3-1.50.9
Condit. Reinf. inactive responses2.43.03.6-1.6-1.9-1.81.5
Condit. Reinf. lever presses0.30.41.3-0.2-0.3-0.41.1
Condit. Reinf. lever reinforcers received1.11.52.2-1.1-1.3-1.51.1
Conditioned reinforcement - actives1.81.82.8-1.4-1.5-1.70.1
Conditioned reinforcement - inactives2.02.23.0-1.2-1.5-1.71.5
Conditioned locomotion1.61.93.0-1.4-1.5-1.7-0.7
Patch foraging indifference point 0 sec1.11.83.1-1.4-1.4-1.8-0.5
Patch foraging indifference point AUC0.30.30.5-0.20.70.70.6
Delay disc. indifference point, 0s delay0.91.01.5-1.2-1.1-1.10.3
Delay disc. indifference point, 16s delay0.50.60.8-0.8-0.8-0.9-0.4
Delay disc. indifference point, 2s delay1.82.03.0-1.7-1.4-1.70.2
Delay disc. indifference point, 24s delay0.10.00.1-0.30.20.10.2
Delay disc. indifference point, 4s delay0.30.40.5-0.7-0.5-0.6-0.6
Delay disc. indifference point, 8s delay0.70.81.3-0.5-1.0-1.1-0.7
Indifference point function ln k0.10.10.20.1-0.3-0.3-0.4
Indifference point function log k0.10.10.20.1-0.3-0.3-0.4
Patch foraging total patch changes 0 sec0.81.22.0-1.1-1.1-1.4-0.7
Patch foraging total patch changes 12 sec3.44.46.7-2.6-2.1-2.50.7
Patch foraging total patch changes 18 sec0.40.51.1-1.1-0.3-0.8-0.5
Patch foraging total patch changes 24 sec1.31.63.2-1.8-1.2-1.3-0.4
Patch foraging total patch changes 6 sec0.91.42.3-1.5-1.0-1.50.0
Patch foraging time to switch 0 sec0.10.10.3-0.1-0.4-0.6-0.1
Patch foraging water rate 0 sec0.20.30.70.20.30.5-0.9
Patch foraging water rate 12 sec0.40.61.00.70.71.0-0.5
Patch foraging water rate 18 sec0.40.51.1-0.6-1.0-0.60.5
Patch foraging water rate 24 sec0.30.40.5-0.4-0.7-0.7-0.5
Patch foraging water rate 6 sec0.71.01.4-1.1-1.1-0.51.2
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.30.10.10.4
Distance traveled before self-admin0.20.20.60.80.0-0.1-0.5
Distance traveled after self-admin1.82.03.61.41.11.2-1.9
Extensor digitorum longus weight6.927.032.65.75.75.2-4.0
Bone: elastic displacement0.10.10.1-0.1-0.1-0.3-0.3
Bone: elastic work0.00.00.2-0.10.10.1-0.4
Bone: endosteal estimation2.14.66.12.21.91.8-2.5
Bone: endosteal perimeter1.93.85.32.11.81.5-2.3
Epididymis fat weight0.20.50.70.80.60.7-0.7
Delta time in closed arm before/after self-admin3.23.14.52.11.61.8-1.5
Delta time in open arm before/after self-admin0.10.10.4-0.2-0.1-0.40.6
Diff in mean of infusions in LGA sessions0.10.10.30.60.00.4-0.0
Delay discount exponential model param0.40.50.60.60.60.80.8
Extinction: sum of active levers before priming0.70.61.50.90.61.20.1
Active lever presses in extinction session 60.20.20.3-0.4-0.50.20.5
Bone: final force0.91.42.4-1.5-1.3-1.20.4
Bone: final moment0.71.22.0-1.4-1.2-1.20.1
Food consumed during 24 hour testing period0.91.11.81.01.31.20.2
Glucose0.30.50.9-1.0-0.8-0.7-0.2
Heart weight3.14.35.82.41.81.9-2.2
Delay discount hyperbolic model param0.60.60.90.70.71.00.7
Intermittent access intake day 1-15 change0.10.10.2-0.4-0.4-0.3-0.1
Intermittent access intake escalation0.10.10.2-0.2-0.3-0.3-0.4
Intermittent access intake escalation 20.20.20.30.30.50.5-0.5
Intermitt. access day 1 inactive lever presses1.31.42.0-0.7-1.2-1.31.4
Intermitt. access day 15 inactive lever presses2.32.54.1-1.6-1.6-2.00.9
Intermitt. access escalation Index1.71.54.20.90.90.6-2.0
Intermittent access day 1 total infusions0.20.20.5-0.4-0.7-0.30.4
Intermittent access day 15 total infusions0.30.30.6-0.5-0.7-0.50.1
Intermittent access terminal intake (last 3 days)0.30.30.5-0.7-0.6-0.50.3
Intermittent access total infusions0.10.10.2-0.3-0.5-0.2-0.1
Intermittent access day 1 locomotion0.50.50.9-0.6-0.9-0.70.6
Intermittent access day 15 total locomotion0.50.50.7-0.8-0.9-0.40.7
Intermittent access total locomotion0.70.81.3-1.0-1.1-0.90.1
Intermittent access standard deviation0.20.20.2-0.5-0.5-0.3-0.4
Left kidney weight2.67.49.22.62.83.0-2.5
Right kidney weight0.92.43.81.11.41.7-1.9
Cocaine induced anxiety1.92.23.11.51.81.6-1.0
Post-drug Anxiety0.10.10.40.20.30.00.6
Baseline Anxiety3.23.45.0-1.6-2.0-2.21.4
Tail length1.13.36.21.91.82.50.7
Length with tail4.115.021.94.34.34.7-1.1
Length without tail3.78.110.23.23.13.0-1.8
Times rat made contact with spout0.80.91.4-1.2-0.8-0.81.0
Lifetime Intake0.00.10.1-0.2-0.4-0.10.1
Liver weight, left0.10.20.30.40.40.50.4
Liver weight, right0.10.20.5-0.2-0.10.30.7
Locomotor activity0.50.81.2-1.0-1.0-1.1-0.0
Locomotor testing distance2.84.66.5-2.2-2.5-2.60.8
Locomotor testing rearing4.77.38.8-2.8-3.0-2.42.5
Locomotion in novel chamber2.73.35.3-2.3-1.8-1.41.7
Locomotion in novel chamber post-restriction0.60.71.2-1.1-0.7-1.00.1
Fecal boli incidents, locomotor time 10.50.50.70.60.60.7-0.8
Change in fecal boli incidents, locomotor task0.30.30.9-0.3-0.3-0.00.9
Time >=10cm from walls, locomotor time 10.60.61.0-0.9-1.0-0.70.5
Bouts of movement, locomotor time 10.40.51.00.80.50.2-1.0
Total resting periods, locomotor time 10.60.71.21.00.70.3-1.1
Rest time, locomotor task time 10.20.20.6-0.00.1-0.3-0.8
Distance moved, locomotor task time 10.30.30.5-0.7-0.7-0.40.4
Vertical activity count, locomotor time 10.10.10.20.4-0.30.30.3
Time >=10cm from walls, locomotor time 21.61.72.2-1.2-1.5-1.11.3
Bouts of movement, locomotor time 20.20.20.30.1-0.5-0.5-0.4
Total resting periods, locomotor time 20.20.20.40.4-0.3-0.5-0.7
Rest time, locomotor task time 20.91.01.81.31.10.9-0.5
Distance moved, locomotor task time 20.00.00.1-0.1-0.10.1-0.4
Vertical activity count, locomotor time 20.20.20.50.4-0.20.0-0.7
Light reinforcement 11.73.24.8-1.8-2.0-2.20.9
Light reinforcement 20.50.71.0-0.9-0.9-1.00.3
Bone: marrow area1.94.25.42.21.91.8-2.3
Bone: maximum diameter0.10.20.6-0.20.0-0.1-0.8
Bone: maximum force0.10.20.5-0.4-0.2-0.0-0.7
Bone: maximum moment0.10.20.8-0.2-0.10.0-0.9
Mean time between licks in bursts1.11.51.91.41.31.0-1.1
Mean num. licks in bursts0.00.00.00.0-0.1-0.1-0.1
Cd content in liver0.30.30.7-0.3-0.5-0.30.9
Co content in liver1.21.41.71.21.31.3-0.9
Cu content in liver0.70.91.51.01.20.90.2
Fe content in liver1.21.51.91.41.41.4-0.2
K content in liver0.20.20.4-0.6-0.3-0.3-0.3
Mg content in liver0.30.30.6-0.6-0.3-0.40.7
Mn content in liver0.91.03.0-0.8-0.6-0.51.7
Na content in liver0.20.20.4-0.6-0.3-0.6-0.3
Rb content in liver1.31.62.6-1.1-1.2-1.61.1
Se content in liver1.61.93.3-1.8-1.4-1.20.8
Sr content in liver0.20.20.40.40.40.70.4
Zn content in liver1.61.82.8-1.3-1.4-1.70.7
Bone: minimum diameter0.50.91.11.00.91.1-0.9
Time in familiar zone, hab. session 11.00.92.2-0.6-0.9-0.61.5
Time in novel zone, hab. session 10.70.70.9-0.9-0.7-1.0-0.8
Total zone transitions, hab. session 12.02.83.71.81.91.90.8
Total locomotion distance, hab. session 10.30.51.80.20.20.21.3
Locomotion velocity, hab. session 10.60.80.90.90.90.90.9
Time in familiar zone, hab. session 20.50.50.7-0.5-0.8-0.90.6
Time in novel zone, hab. session 20.00.00.1-0.3-0.1-0.1-0.2
Total zone transitions, hab. session 20.50.60.91.00.90.80.4
Total locomotion distance, hab. session 20.00.10.20.40.20.10.0
Locomotion velocity, hab. session 20.10.20.40.70.40.4-0.2
Novel to familiar place preference ratio1.51.52.71.21.31.7-0.5
Novelty place preference0.90.91.90.90.91.4-0.3
Time in novel zone, NPP test0.30.30.70.40.50.90.0
Total zone transitions, NPP test0.50.81.50.70.80.71.2
Total locomotion distance, NPP test0.20.31.2-0.10.0-0.11.1
Locomotion velocity, NPP test0.30.40.50.60.70.50.7
Intraocular pressure1.01.52.41.51.11.5-0.3
Delta distance traveled before/after self-admin1.21.31.71.01.01.1-1.3
Delta ambulatory time before/after self-admin0.30.30.60.30.50.6-0.8
Parametrial fat weight0.61.22.4-0.8-1.3-1.5-0.3
Pavlov. Cond. lever latency3.34.25.42.01.92.0-2.3
Pavlov. Cond. magazine entry latency8.611.014.1-3.8-3.6-3.42.4
Pavlov. Cond. change in total contacts7.68.19.8-3.1-2.8-2.33.1
Pavlov. Cond. index score8.010.111.7-3.4-3.3-3.22.8
Pavlov. Cond. latency score6.38.09.3-3.0-2.8-2.82.6
Pavlov. Cond. lever contacts3.13.65.3-1.8-1.7-1.82.3
Pavlov. Cond. magazine entry number11.214.017.64.23.93.7-3.1
Pavlov. Cond. intertrial magazine entries1.21.51.91.31.41.3-0.6
Pavlov. Cond. lever-magazine prob. diff.8.911.013.0-3.6-3.5-3.32.8
Pavlov. Cond. response bias8.910.812.6-3.5-3.4-3.32.9
Pavlov. Cond. lever latency0.20.30.40.60.50.6-0.1
Pavlov. Cond. magazine entry latency0.10.10.10.00.20.30.4
Pavlov. Cond. change in total contacts0.40.61.0-0.8-0.8-1.00.2
Pavlov. Cond. index score0.10.10.3-0.5-0.4-0.40.2
Pavlov. Cond. latency score0.10.10.2-0.4-0.3-0.20.2
Pavlov. Cond. lever contacts0.71.01.3-1.1-1.1-1.10.6
Pavlov. Cond. magazine entry number0.10.10.10.40.40.4-0.0
Pavlov. Cond. intertrial magazine entries1.01.31.91.41.41.20.2
Pavlov. Cond. lever-magazine prob. diff.0.00.10.1-0.3-0.2-0.3-0.0
Pavlov. Cond. response bias0.81.01.5-1.2-1.1-1.20.4
Time in closed arm before self-admin1.51.73.7-1.5-1.0-1.90.2
Time in closed arm after self-admin0.60.61.20.70.90.2-1.1
Time in open arm before self-admin3.13.35.72.41.62.0-1.0
Time in open arm after self-admin0.60.61.41.20.60.80.4
Bone: periosteal estimation0.30.71.80.60.60.5-1.3
Bone: periosteal perimeter0.81.32.01.11.00.9-1.4
Bone: post-yield work0.91.21.31.11.01.1-1.1
Progressive ratio test 1 active lever presses1.11.22.4-1.5-1.2-1.00.3
Progressive ratio test 1 breakpoint1.21.32.3-1.5-1.2-1.00.6
Progressive ratio test 1 inactive lever presses1.21.32.1-1.0-1.3-1.50.4
Progressive ratio test 2 active lever presses1.11.21.7-1.3-1.2-1.00.8
Progressive ratio test 2 breakpoint1.01.11.8-1.3-1.1-0.80.8
Progressive ratio test 2 inactive lever presses0.10.10.3-0.2-0.20.00.5
Incentive Sensitization - Responses0.90.91.5-1.2-1.0-0.90.7
Incentive Sensitization - Breakpoint0.80.81.4-1.2-0.9-0.80.5
Sum of active levers in priming session hrs 5-60.80.82.0-0.6-0.90.01.4
Progressive ratio0.10.10.2-0.00.1-0.40.3
Food seeking constrained by brief footshock0.20.20.3-0.6-0.5-0.5-0.5
Seeking ratio, punishment vs. effort0.10.20.4-0.4-0.60.1-0.4
Retroperitoneal fat weight0.30.83.00.50.30.1-1.7
Reaction time number correct0.50.81.41.21.10.7-0.3
Reaction time mean minus median0.00.10.10.20.2-0.30.2
Reaction time mean minus median AUC0.50.71.3-0.5-0.6-1.10.9
Reaction time num false alarms0.71.01.4-1.0-1.2-0.71.2
Reaction time num false alarms AUC0.60.81.1-0.9-1.0-0.71.1
Reaction time trials correct on left0.50.81.41.21.10.7-0.3
Reaction time trials on left0.50.71.31.21.10.6-0.3
Reaction time mean0.00.00.2-0.10.0-0.4-0.1
Reaction time mean AUC0.00.00.10.10.1-0.3-0.1
Median of all reaction times0.20.20.4-0.5-0.4-0.70.1
Reaction time omissions0.60.81.2-1.1-1.0-1.00.3
Reaction time false alarm rate1.01.52.1-1.4-1.5-0.91.0
Reaction time premature initiation rate0.40.50.7-0.8-0.6-0.90.6
Reaction time premature initiations0.00.10.10.10.2-0.20.4
Std. dev. reaction times0.10.10.2-0.1-0.0-0.50.4
Reaction time trials completed0.50.71.31.21.10.6-0.3
Reaction time trials AUC0.40.61.11.00.90.5-0.2
Run reversals in cocaine runway, females2.32.22.51.61.31.6-1.6
Run reversals in cocaine runway, males0.50.50.8-0.4-0.7-0.90.7
Latency to leave start box in cocaine runway3.23.44.61.91.81.5-2.2
Latency to leave start box in cocaine runway, F3.23.56.11.81.81.2-2.5
Latency to leave start box in cocaine runway, M0.40.40.90.60.40.9-0.5
Std. dev. time between licks in bursts0.30.30.60.40.60.3-0.8
Total sessions with >9 infusions0.70.81.1-1.0-1.1-0.80.4
Short access day 1 total inactive lever presses2.52.74.1-1.2-1.7-1.62.0
Short access day 10 total inactive lever presses0.20.30.50.70.60.20.4
Short access day 1 total infusions0.20.20.3-0.5-0.4-0.40.5
Short access day 10 total infusions0.10.10.2-0.4-0.40.0-0.0
Short access total infusions0.00.00.1-0.2-0.10.10.0
Short access day 1 locomotion1.82.03.3-1.8-1.4-1.50.5
Short access day 10 total locomotion1.61.82.3-1.5-1.5-1.31.0
Short access total locomotion0.50.60.8-0.8-0.9-0.80.4
One hour access (0.3 mA shock)0.10.10.2-0.2-0.5-0.40.4
Compulsive drug intake0.20.20.60.00.0-0.20.8
One hour access (shock baseline)0.20.30.5-0.3-0.7-0.6-0.4
Social response proportion0.10.10.2-0.1-0.2-0.3-0.4
Social responses0.10.10.2-0.2-0.4-0.3-0.0
Social time0.00.00.00.2-0.0-0.10.1
Soleus weight0.51.41.8-1.3-1.2-1.3-0.8
Bone: stiffness0.00.10.1-0.3-0.3-0.0-0.2
Tibialis anterior weight1.13.65.12.12.32.1-0.7
Time to tail flick, vehicle, before self-admin0.30.31.2-0.4-0.20.01.1
Time to tail flick, vehicle, after self-admin0.10.10.3-0.1-0.0-0.60.3
Time to tail flick, test, before self-admin0.60.50.80.90.70.9-0.4
Time to tail flick, test, after self-admin0.10.20.3-0.20.10.5-0.5
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.6-0.5-0.7-0.0
Delta time to tail flick, test, before/after SA1.00.91.6-1.3-1.0-0.90.2
Tibia length0.92.53.01.41.61.6-1.7
Ambulatory time before self-admin0.40.41.01.00.30.3-0.7
Ambulatory time after self-admin3.23.54.91.81.61.8-2.2
Bone: tissue strength0.40.40.60.50.80.7-0.3
Total heroin consumption0.40.51.5-0.5-0.5-0.01.2
Bone: trabecular number3.96.08.7-2.9-2.6-2.71.1
Bone: trabecular spacing0.60.81.41.21.00.9-0.1
Bone: trabecular thickness0.40.51.9-0.30.0-0.1-1.4
Bone: trabecular tissue density0.10.10.3-0.1-0.1-0.10.5
Water consumed over 24 hours0.00.10.2-0.10.1-0.20.4
Number of responses in last shaping day0.20.20.40.00.40.60.5