Ano1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Ano1 0.14 0.06 1.1e-13 0.03 0.09 0.08 0.09 1.1e-04 5.7e-10 1.4e-09 9.0e-10
2 Adipose gene expression Ano1 0.13 0.06 3.3e-13 0.08 0.09 0.08 0.04 1.8e-09 7.4e-10 6.4e-09 1.2e-05
3 Liver gene expression Ano1 0.05 0.03 2.2e-04 0.01 0.02 0.01 0.01 2.2e-02 3.1e-03 7.0e-03 3.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.95.010.3-3.2-2.20.2
Area under the delay curve1.41.62.8-1.7-1.4-0.5
BMI with tail1.13.97.6-2.8-2.10.2
BMI without tail0.31.01.8-1.3-0.70.9
Body weight0.31.53.8-0.90.01.9
Weight adjusted by age0.00.00.10.30.1-0.0
Bone surface2.95.210.7-3.3-2.20.5
Bone volume2.74.99.7-3.1-2.20.1
Breakpoint value in progressive ratio session1.51.73.80.51.12.0
Number of licking bursts0.00.00.1-0.2-0.20.2
Context. condit. distance diff. score0.30.40.9-0.2-0.5-0.9
Locomotion velocity, session 10.00.00.1-0.3-0.1-0.0
Locomotion distance, session 11.51.93.0-1.7-1.6-0.4
Locomotion velocity, session 20.81.02.30.30.71.5
Locomotion distance, session 20.50.71.1-1.1-0.90.1
Locomotion velocity, session 30.80.91.7-1.3-1.00.1
Locomotion distance, session 30.20.20.3-0.5-0.6-0.4
Stereotopy head waving bouts, day 30.70.81.3-1.1-1.0-0.2
Stereotopy head waving duration, day 31.62.02.8-1.7-1.5-0.9
Locomotion velocity, session 70.10.10.2-0.4-0.30.2
Locomotion distance, session 70.10.10.2-0.4-0.30.0
Stereotopy head waving bouts, day 73.23.65.8-2.4-2.0-1.0
Stereotopy head waving duration, day 71.11.43.0-1.7-1.00.3
Locomotion velocity, session 80.60.71.80.00.61.3
Locomotion distance, session 80.71.01.3-0.7-1.1-1.0
Degree of sensitization distance0.10.10.3-0.40.00.5
Degree of sensitization stereotypy1.31.42.5-1.6-1.2-0.4
Conditioned locomotion2.73.13.61.91.91.4
Cocaine response after cond. corrected0.00.00.1-0.2-0.00.1
Cocaine response after cond. not corrected0.50.61.2-1.1-0.7-0.1
Cocaine response before conditioning0.91.01.7-1.3-1.1-0.4
Saline control response0.40.61.5-0.40.21.2
Bone: connectivity density2.33.67.7-2.8-1.70.6
Bone: cortical apparent density2.63.54.32.12.11.4
Bone: cortical area0.30.50.60.80.60.7
Bone: cortical porosity0.40.40.5-0.6-0.7-0.6
Bone: cortical porosity0.00.10.1-0.2-0.3-0.1
Bone: cortical thickness3.45.66.52.62.42.1
Bone: cortical thickness1.31.51.71.11.31.3
Bone: cortical tissue density2.73.74.52.12.11.5
Condit. Reinf. active minus inactive responses0.50.60.8-0.8-0.9-0.5
Condit. Reinf. active-inactive response ratio1.41.51.9-0.9-1.4-1.3
Condit. Reinf. active responses0.00.00.10.1-0.2-0.3
Condit. Reinf. inactive responses0.50.60.70.80.80.6
Incentive salience index mean0.20.30.5-0.4-0.7-0.4
Condit. Reinf. lever presses0.10.20.50.70.30.1
Condit. Reinf. active minus inactive responses1.31.73.1-1.8-1.3-0.6
Condit. Reinf. active-inactive response ratio2.02.42.6-1.4-1.6-1.6
Condit. Reinf. active responses1.11.53.5-1.9-1.00.1
Condit. Reinf. inactive responses0.60.81.2-1.1-0.11.1
Condit. Reinf. lever presses1.01.32.9-1.7-1.00.5
Condit. Reinf. lever reinforcers received1.11.53.5-1.9-0.90.4
Conditioned reinforcement - actives0.40.61.41.20.5-0.5
Conditioned reinforcement - inactives0.81.21.8-0.8-1.2-1.3
Conditioned locomotion3.74.810.8-0.5-1.8-3.3
Patch foraging indifference point 0 sec0.00.00.1-0.2-0.00.2
Patch foraging indifference point AUC0.60.91.00.90.91.0
Delay disc. indifference point, 0s delay2.83.15.0-2.2-1.9-0.8
Delay disc. indifference point, 16s delay2.73.03.4-1.6-1.8-1.7
Delay disc. indifference point, 2s delay1.82.02.8-1.7-1.5-0.9
Delay disc. indifference point, 24s delay0.10.10.20.40.40.2
Delay disc. indifference point, 4s delay0.40.40.9-1.0-0.50.1
Delay disc. indifference point, 8s delay0.30.40.7-0.8-0.7-0.2
Indifference point function ln k0.71.22.9-0.3-0.8-1.7
Indifference point function log k0.71.22.9-0.3-0.8-1.7
Patch foraging total patch changes 0 sec0.30.50.80.50.80.9
Patch foraging total patch changes 12 sec1.82.33.41.11.51.9
Patch foraging total patch changes 18 sec0.20.30.8-0.00.20.9
Patch foraging total patch changes 24 sec0.71.22.50.60.91.6
Patch foraging total patch changes 6 sec0.30.51.0-0.6-0.11.0
Patch foraging time to switch 0 sec0.10.20.4-0.6-0.50.3
Patch foraging water rate 0 sec0.30.60.80.90.4-0.8
Patch foraging water rate 12 sec1.22.56.60.0-0.9-2.6
Patch foraging water rate 18 sec0.20.30.9-0.1-0.4-0.9
Patch foraging water rate 24 sec0.71.01.51.20.4-1.1
Patch foraging water rate 6 sec0.30.40.90.60.0-0.9
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.7-0.30.4
Distance traveled before self-admin0.70.91.2-1.0-1.1-0.7
Distance traveled after self-admin0.00.00.0-0.1-0.10.1
Extensor digitorum longus weight2.710.616.02.63.04.0
Bone: elastic displacement0.80.92.01.40.7-0.5
Bone: elastic work0.81.01.51.20.90.7
Bone: endosteal estimation2.45.36.9-2.5-2.6-1.7
Bone: endosteal perimeter3.47.39.2-3.0-3.0-2.0
Epididymis fat weight1.86.112.0-1.2-2.2-3.5
Delta time in closed arm before/after self-admin2.42.23.21.81.51.1
Delta time in open arm before/after self-admin0.50.50.9-0.9-0.7-0.3
Diff in mean of infusions in LGA sessions0.91.11.30.91.11.2
Delay discount exponential model param1.01.12.11.41.10.3
Extinction: sum of active levers before priming0.50.61.50.10.41.2
Active lever presses in extinction session 60.40.40.50.60.60.7
Bone: final force0.40.71.80.00.41.4
Bone: final moment0.40.61.70.00.31.3
Food consumed during 24 hour testing period0.50.70.9-0.7-0.9-1.0
Glucose2.13.44.5-2.1-1.9-1.4
Heart weight1.62.44.7-2.2-1.6-0.2
Delay discount hyperbolic model param1.31.42.51.61.20.4
Intermittent access intake day 1-15 change0.40.81.90.1-0.6-1.4
Intermittent access intake escalation0.30.61.40.4-0.4-1.2
Intermittent access intake escalation 20.50.61.5-0.1-0.6-1.2
Intermitt. access day 1 inactive lever presses0.10.20.40.60.50.3
Intermitt. access day 15 inactive lever presses0.30.70.8-0.8-0.9-0.8
Intermitt. access escalation Index0.50.71.70.6-0.2-1.3
Intermittent access day 1 total infusions2.23.54.9-2.2-2.1-1.1
Intermittent access day 15 total infusions1.72.63.6-1.1-1.7-1.9
Intermittent access terminal intake (last 3 days)2.33.13.7-1.6-1.9-1.7
Intermittent access total infusions1.31.62.0-1.3-1.4-0.9
Intermittent access day 1 locomotion0.91.11.4-1.2-1.2-0.8
Intermittent access day 15 total locomotion2.85.15.7-2.0-2.4-2.4
Intermittent access total locomotion5.46.57.5-2.2-2.7-2.6
Intermittent access standard deviation0.30.50.6-0.6-0.8-0.8
Left kidney weight0.62.94.6-1.1-1.7-2.1
Right kidney weight0.20.92.50.1-0.6-1.6
Cocaine induced anxiety0.10.20.3-0.4-0.5-0.4
Post-drug Anxiety0.00.00.00.20.10.0
Baseline Anxiety0.91.01.21.01.10.8
Tail length1.04.04.41.82.12.1
Length with tail1.14.87.11.62.22.7
Length without tail0.61.82.61.01.41.6
Times rat made contact with spout0.40.50.8-0.8-0.10.9
Lifetime Intake0.60.70.9-0.8-1.0-0.6
Liver weight, left0.20.30.60.80.5-0.2
Liver weight, right0.20.41.00.1-0.2-1.0
Locomotor activity0.81.22.2-0.5-1.2-1.5
Locomotor testing distance0.50.82.00.1-0.7-1.4
Locomotor testing rearing1.32.62.9-1.4-1.7-1.7
Locomotion in novel chamber3.03.84.2-1.7-2.1-2.0
Locomotion in novel chamber post-restriction1.83.05.6-0.9-1.6-2.4
Fecal boli incidents, locomotor time 10.10.20.3-0.6-0.5-0.1
Change in fecal boli incidents, locomotor task0.80.81.10.81.00.8
Time >=10cm from walls, locomotor time 10.91.01.5-1.2-1.1-0.4
Bouts of movement, locomotor time 11.51.72.11.11.41.4
Total resting periods, locomotor time 10.70.71.00.81.00.8
Rest time, locomotor task time 10.70.82.1-0.0-0.6-1.5
Distance moved, locomotor task time 10.20.40.8-0.9-0.60.0
Vertical activity count, locomotor time 10.30.71.0-0.6-0.8-1.0
Time >=10cm from walls, locomotor time 20.20.30.70.80.60.0
Bouts of movement, locomotor time 20.40.60.70.70.80.7
Total resting periods, locomotor time 20.20.30.40.50.60.5
Rest time, locomotor task time 21.62.02.2-1.4-1.5-1.4
Distance moved, locomotor task time 20.40.50.70.80.70.4
Vertical activity count, locomotor time 20.91.22.51.61.0-0.1
Light reinforcement 10.20.40.7-0.4-0.5-0.9
Light reinforcement 20.81.32.6-0.5-1.0-1.6
Bone: marrow area2.45.37.0-2.5-2.6-1.7
Bone: maximum diameter0.00.10.2-0.2-0.4-0.2
Bone: maximum force0.91.62.9-1.7-1.20.7
Bone: maximum moment0.91.52.7-1.6-1.20.6
Mean time between licks in bursts0.51.32.30.71.11.5
Mean num. licks in bursts0.10.10.2-0.5-0.10.2
Cd content in liver0.80.91.9-0.5-0.8-1.4
Co content in liver2.83.36.22.51.90.3
Cu content in liver0.10.10.20.40.0-0.2
Fe content in liver0.10.10.10.20.20.4
K content in liver0.20.20.3-0.5-0.5-0.0
Mg content in liver1.01.01.1-0.9-1.1-1.0
Mn content in liver0.30.41.00.10.41.0
Na content in liver0.60.71.5-0.2-0.7-1.2
Rb content in liver0.10.10.3-0.5-0.1-0.1
Se content in liver1.41.72.1-1.2-1.4-1.2
Sr content in liver0.20.20.30.60.40.3
Zn content in liver1.41.62.21.51.40.9
Bone: minimum diameter1.83.34.8-2.2-2.0-0.9
Time in familiar zone, hab. session 11.21.21.6-1.2-1.3-0.8
Time in novel zone, hab. session 10.90.91.21.01.10.7
Total zone transitions, hab. session 12.13.04.0-1.9-2.0-1.1
Total locomotion distance, hab. session 12.43.34.1-1.4-2.0-2.0
Locomotion velocity, hab. session 11.52.12.6-1.0-1.6-1.6
Time in familiar zone, hab. session 21.01.01.31.01.20.9
Time in novel zone, hab. session 20.30.30.6-0.8-0.50.0
Total zone transitions, hab. session 23.34.28.3-2.9-2.10.1
Total locomotion distance, hab. session 20.70.91.5-1.2-1.1-0.4
Locomotion velocity, hab. session 21.21.62.2-1.4-1.5-0.8
Novel to familiar place preference ratio0.20.20.5-0.7-0.30.3
Novelty place preference0.40.40.9-1.0-0.6-0.0
Time in novel zone, NPP test0.50.51.1-1.0-0.6-0.0
Total zone transitions, NPP test0.71.12.0-1.4-1.00.4
Total locomotion distance, NPP test0.00.00.1-0.2-0.30.0
Locomotion velocity, NPP test0.00.00.1-0.1-0.20.0
Intraocular pressure0.30.40.70.80.6-0.4
Delta distance traveled before/after self-admin0.30.30.50.40.60.7
Delta ambulatory time before/after self-admin0.60.70.90.60.91.0
Parametrial fat weight0.40.92.0-0.4-0.7-1.4
Pavlov. Cond. lever latency0.30.40.70.80.7-0.2
Pavlov. Cond. magazine entry latency0.40.61.2-1.1-0.7-0.0
Pavlov. Cond. change in total contacts0.30.30.4-0.6-0.6-0.3
Pavlov. Cond. index score0.40.50.7-0.8-0.8-0.4
Pavlov. Cond. latency score0.40.50.7-0.9-0.8-0.2
Pavlov. Cond. lever contacts0.30.30.5-0.7-0.7-0.1
Pavlov. Cond. magazine entry number0.10.10.20.40.30.2
Pavlov. Cond. intertrial magazine entries0.50.61.11.00.80.3
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.8-0.8-0.4
Pavlov. Cond. response bias0.20.20.3-0.5-0.5-0.4
Pavlov. Cond. lever latency0.00.00.10.20.3-0.0
Pavlov. Cond. magazine entry latency0.91.12.8-0.70.21.7
Pavlov. Cond. change in total contacts0.20.30.7-0.8-0.40.4
Pavlov. Cond. index score0.20.30.4-0.7-0.30.6
Pavlov. Cond. latency score0.20.20.3-0.6-0.40.4
Pavlov. Cond. lever contacts0.00.10.1-0.3-0.20.2
Pavlov. Cond. magazine entry number0.91.11.91.10.2-1.4
Pavlov. Cond. intertrial magazine entries0.10.20.40.30.2-0.6
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.7-0.20.8
Pavlov. Cond. response bias0.30.40.7-0.7-0.20.9
Time in closed arm before self-admin0.20.30.5-0.7-0.5-0.2
Time in closed arm after self-admin0.90.91.01.01.01.0
Time in open arm before self-admin0.50.51.21.10.60.0
Time in open arm after self-admin0.00.00.00.1-0.0-0.1
Bone: periosteal estimation0.40.81.4-1.0-1.2-0.5
Bone: periosteal perimeter0.40.61.3-1.1-0.80.1
Bone: post-yield work5.78.414.5-3.8-3.2-0.8
Progressive ratio test 1 active lever presses0.30.40.50.60.70.7
Progressive ratio test 1 breakpoint0.40.40.50.60.70.7
Progressive ratio test 1 inactive lever presses0.20.30.60.80.50.4
Progressive ratio test 2 active lever presses0.40.50.9-0.3-0.7-0.9
Progressive ratio test 2 breakpoint0.30.40.7-0.2-0.6-0.9
Progressive ratio test 2 inactive lever presses2.54.16.5-1.2-2.1-2.5
Incentive Sensitization - Responses0.10.10.1-0.4-0.30.1
Incentive Sensitization - Breakpoint0.10.10.2-0.4-0.4-0.1
Sum of active levers in priming session hrs 5-61.11.02.11.40.90.1
Progressive ratio1.01.52.7-1.6-0.71.1
Food seeking constrained by brief footshock0.10.10.20.10.30.4
Seeking ratio, punishment vs. effort0.60.91.51.20.5-1.0
Retroperitoneal fat weight3.414.527.3-2.1-3.4-5.2
Reaction time number correct0.50.91.3-1.1-0.9-0.8
Reaction time mean minus median0.10.20.5-0.20.10.7
Reaction time mean minus median AUC0.00.10.3-0.20.10.5
Reaction time num false alarms1.41.92.91.71.50.9
Reaction time num false alarms AUC1.93.03.31.81.81.6
Reaction time trials correct on left0.50.91.3-1.1-0.9-0.8
Reaction time trials on left0.40.81.1-1.1-0.9-0.7
Reaction time mean0.20.30.4-0.5-0.6-0.4
Reaction time mean AUC0.30.40.6-0.6-0.8-0.6
Median of all reaction times0.40.50.7-0.7-0.8-0.7
Reaction time omissions0.50.81.80.30.71.4
Reaction time false alarm rate3.04.15.42.32.11.6
Reaction time premature initiation rate0.40.61.00.40.81.0
Reaction time premature initiations0.20.30.60.00.50.8
Std. dev. reaction times0.10.10.3-0.10.10.5
Reaction time trials completed0.40.81.1-1.1-0.9-0.7
Reaction time trials AUC0.50.91.3-1.2-0.9-0.7
Run reversals in cocaine runway, females0.30.30.7-0.40.10.8
Run reversals in cocaine runway, males1.41.41.91.41.30.9
Latency to leave start box in cocaine runway1.01.21.4-1.2-1.2-0.8
Latency to leave start box in cocaine runway, F0.50.60.7-0.8-0.8-0.7
Latency to leave start box in cocaine runway, M0.10.10.2-0.4-0.4-0.1
Std. dev. time between licks in bursts3.04.14.72.22.21.7
Total sessions with >9 infusions0.10.20.40.10.20.7
Short access day 1 total inactive lever presses0.40.50.6-0.5-0.7-0.8
Short access day 10 total inactive lever presses0.20.40.5-0.7-0.7-0.5
Short access day 1 total infusions0.20.30.5-0.2-0.6-0.7
Short access day 10 total infusions0.70.81.7-1.3-0.70.5
Short access total infusions0.10.10.2-0.2-0.00.5
Short access day 1 locomotion0.20.30.4-0.2-0.6-0.7
Short access day 10 total locomotion0.61.11.7-1.3-1.1-0.6
Short access total locomotion0.40.50.7-0.7-0.8-0.7
One hour access (0.3 mA shock)2.73.14.4-1.2-1.8-2.1
Compulsive drug intake2.93.44.01.82.01.8
One hour access (shock baseline)3.14.77.2-1.5-2.2-2.7
Social response proportion0.20.20.4-0.60.10.6
Social responses0.10.10.20.20.30.5
Social time0.10.20.30.20.40.6
Soleus weight0.51.52.61.30.2-1.6
Bone: stiffness0.91.42.6-1.6-1.00.8
Tibialis anterior weight2.17.27.82.82.52.8
Time to tail flick, vehicle, before self-admin0.70.71.2-1.1-0.31.0
Time to tail flick, vehicle, after self-admin0.40.61.1-1.0-0.40.6
Time to tail flick, test, before self-admin1.91.93.3-1.8-1.5-0.5
Time to tail flick, test, after self-admin0.60.60.90.50.80.9
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.3-0.10.3
Delta time to tail flick, test, before/after SA6.87.09.13.02.91.8
Tibia length0.10.20.30.3-0.2-0.6
Ambulatory time before self-admin0.60.91.3-0.9-1.1-0.8
Ambulatory time after self-admin1.21.41.8-1.2-1.3-0.9
Bone: tissue strength1.61.62.2-1.3-1.5-0.9
Total heroin consumption2.42.84.91.01.62.2
Bone: trabecular number2.33.88.0-2.8-1.80.3
Bone: trabecular spacing0.60.81.71.30.7-0.3
Bone: trabecular thickness2.32.95.3-2.3-1.8-0.4
Bone: trabecular tissue density1.21.72.71.70.4-1.5
Water consumed over 24 hours0.50.71.4-1.2-0.70.6
Number of responses in last shaping day0.10.10.30.50.30.1