Amn

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye intron excision ratio chr6_136139496_136139582 0.36 0.25 1.7e-03 0.22 0.19 0.2 0.2 2.5e-04 7.7e-04 5.3e-04 4.7e-04
2 Eye intron excision ratio chr6_136139496_136139585 0.3 0.22 4.1e-03 0.14 0.18 0.18 0.18 3.3e-03 1.0e-03 9.6e-04 9.4e-04
3 OFC alternative polyA XM_006240588.3 0.25 0.17 7.4e-05 0.08 0.12 0.12 0.1 5.9e-03 9.1e-04 9.9e-04 2.1e-03
4 PL gene expression Amn 0.08 0.06 6.5e-09 0.08 0.08 0.07 0.08 3.5e-09 7.4e-09 5.1e-08 1.1e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.20.4-0.40.40.4
Area under the delay curve0.10.10.20.3-0.30.40.4
BMI with tail3.913.413.63.7-3.73.73.6
BMI without tail2.88.68.72.9-2.92.92.9
Body weight0.00.20.2-0.50.5-0.4-0.3
Weight adjusted by age0.00.00.00.0-0.0-0.1-0.1
Bone surface0.00.10.10.3-0.40.20.1
Bone volume0.10.10.20.4-0.40.40.2
Breakpoint value in progressive ratio session0.10.10.1-0.30.3-0.2-0.2
Number of licking bursts0.00.10.1-0.10.2-0.4-0.3
Context. condit. distance diff. score1.72.12.4-1.51.5-1.4-1.3
Locomotion velocity, session 10.40.40.6-0.60.6-0.6-0.8
Locomotion distance, session 10.20.30.30.6-0.60.60.4
Locomotion velocity, session 20.00.00.1-0.10.10.20.3
Locomotion distance, session 20.30.40.40.7-0.60.60.6
Locomotion velocity, session 30.20.20.30.4-0.40.50.5
Locomotion distance, session 30.00.00.0-0.10.2-0.1-0.1
Stereotopy head waving bouts, day 30.10.20.2-0.40.4-0.4-0.3
Stereotopy head waving duration, day 30.30.40.5-0.70.7-0.5-0.5
Locomotion velocity, session 70.30.30.50.4-0.40.70.6
Locomotion distance, session 70.70.91.00.9-0.91.00.9
Stereotopy head waving bouts, day 70.50.60.6-0.70.7-0.8-0.8
Stereotopy head waving duration, day 70.30.30.4-0.60.6-0.5-0.5
Locomotion velocity, session 80.20.20.3-0.60.6-0.4-0.3
Locomotion distance, session 80.00.00.00.1-0.10.20.1
Degree of sensitization distance0.10.10.10.3-0.30.40.3
Degree of sensitization stereotypy0.20.20.2-0.40.4-0.5-0.5
Conditioned locomotion1.21.41.6-1.31.3-1.1-1.1
Cocaine response after cond. corrected0.50.60.70.8-0.80.70.7
Cocaine response after cond. not corrected1.82.22.31.5-1.51.41.4
Cocaine response before conditioning2.53.03.11.7-1.71.81.8
Saline control response0.10.10.20.4-0.40.40.2
Bone: connectivity density0.00.00.0-0.10.1-0.1-0.1
Bone: cortical apparent density8.211.212.2-3.53.5-3.3-3.1
Bone: cortical area0.71.01.5-0.80.8-1.1-1.2
Bone: cortical porosity0.00.00.1-0.30.3-0.1-0.1
Bone: cortical porosity0.10.10.20.3-0.30.40.4
Bone: cortical thickness0.71.21.7-0.91.0-1.2-1.3
Bone: cortical thickness0.91.11.2-1.01.0-1.1-1.1
Bone: cortical tissue density8.111.012.0-3.53.4-3.2-3.1
Condit. Reinf. active minus inactive responses0.60.70.80.9-0.90.80.7
Condit. Reinf. active-inactive response ratio2.72.83.21.8-1.81.61.5
Condit. Reinf. active responses0.20.30.30.5-0.60.50.5
Condit. Reinf. inactive responses1.82.22.3-1.51.5-1.5-1.4
Incentive salience index mean0.50.60.60.8-0.80.70.7
Condit. Reinf. lever presses0.10.20.20.3-0.30.50.5
Condit. Reinf. active minus inactive responses0.30.30.4-0.60.6-0.5-0.6
Condit. Reinf. active-inactive response ratio0.30.40.4-0.60.6-0.6-0.6
Condit. Reinf. active responses0.00.00.10.2-0.20.20.2
Condit. Reinf. inactive responses0.81.11.11.0-1.01.01.1
Condit. Reinf. lever presses1.72.42.51.5-1.51.61.5
Condit. Reinf. lever reinforcers received0.00.00.10.2-0.20.30.2
Conditioned reinforcement - actives0.40.70.7-0.80.8-0.8-0.8
Conditioned reinforcement - inactives0.10.10.1-0.40.4-0.3-0.3
Conditioned locomotion0.40.60.70.7-0.70.80.8
Patch foraging indifference point 0 sec2.44.54.8-2.22.2-2.1-2.0
Patch foraging indifference point AUC2.02.93.2-1.71.7-1.6-1.8
Delay disc. indifference point, 0s delay0.20.20.3-0.60.5-0.4-0.4
Delay disc. indifference point, 16s delay0.00.00.10.1-0.10.30.3
Delay disc. indifference point, 2s delay0.10.10.10.3-0.30.20.2
Delay disc. indifference point, 24s delay0.10.10.20.4-0.40.20.3
Delay disc. indifference point, 4s delay0.20.20.2-0.50.5-0.4-0.2
Delay disc. indifference point, 8s delay0.30.30.40.5-0.50.60.6
Indifference point function ln k0.30.50.5-0.60.6-0.7-0.7
Indifference point function log k0.30.50.5-0.60.6-0.7-0.7
Patch foraging total patch changes 0 sec2.64.85.3-2.32.3-2.2-2.0
Patch foraging total patch changes 12 sec3.44.44.8-2.22.2-2.0-2.0
Patch foraging total patch changes 18 sec1.32.02.6-1.61.6-1.1-1.2
Patch foraging total patch changes 24 sec0.10.10.2-0.40.4-0.3-0.3
Patch foraging total patch changes 6 sec1.52.42.5-1.61.6-1.5-1.4
Patch foraging time to switch 0 sec7.515.316.03.8-3.84.04.0
Patch foraging water rate 0 sec13.127.528.4-5.25.2-5.3-5.2
Patch foraging water rate 12 sec6.814.314.8-3.83.8-3.8-3.7
Patch foraging water rate 18 sec4.16.47.1-2.52.4-2.7-2.5
Patch foraging water rate 24 sec3.85.35.8-2.22.2-2.4-2.4
Patch foraging water rate 6 sec4.16.06.2-2.52.5-2.5-2.4
Seeking ratio, delayed vs. immediate footshock0.30.40.4-0.60.6-0.5-0.6
Distance traveled before self-admin0.50.70.80.8-0.80.80.9
Distance traveled after self-admin0.10.10.1-0.30.3-0.3-0.2
Extensor digitorum longus weight5.521.822.3-4.74.7-4.7-4.6
Bone: elastic displacement0.50.60.8-0.70.7-0.8-0.9
Bone: elastic work0.30.40.6-0.50.5-0.7-0.8
Bone: endosteal estimation0.20.50.70.8-0.80.70.6
Bone: endosteal perimeter0.00.00.10.3-0.30.1-0.0
Epididymis fat weight2.79.39.93.0-3.03.13.1
Delta time in closed arm before/after self-admin0.10.10.10.2-0.20.20.2
Delta time in open arm before/after self-admin0.80.80.8-0.90.9-0.9-0.9
Diff in mean of infusions in LGA sessions0.00.00.00.00.00.00.1
Delay discount exponential model param0.10.10.2-0.30.3-0.4-0.4
Extinction: sum of active levers before priming0.30.30.30.5-0.50.60.6
Active lever presses in extinction session 61.51.41.6-1.31.2-1.2-1.1
Bone: final force0.20.30.5-0.40.5-0.6-0.7
Bone: final moment0.20.40.5-0.50.5-0.7-0.7
Food consumed during 24 hour testing period0.10.10.2-0.20.2-0.4-0.4
Glucose0.81.21.4-1.11.1-1.0-1.2
Heart weight0.60.91.1-1.01.0-0.9-0.9
Delay discount hyperbolic model param0.10.10.1-0.30.3-0.3-0.3
Intermittent access intake day 1-15 change1.53.03.01.7-1.71.71.7
Intermittent access intake escalation1.42.92.91.7-1.71.71.7
Intermittent access intake escalation 20.60.70.70.8-0.80.80.8
Intermitt. access day 1 inactive lever presses0.10.40.6-0.60.6-0.7-0.7
Intermitt. access day 15 inactive lever presses0.61.31.4-1.11.1-1.2-1.1
Intermitt. access escalation Index0.20.30.5-0.50.5-0.7-0.6
Intermittent access day 1 total infusions0.30.50.60.7-0.70.70.7
Intermittent access day 15 total infusions1.42.02.11.5-1.41.41.4
Intermittent access terminal intake (last 3 days)2.12.82.91.7-1.71.71.6
Intermittent access total infusions1.11.31.41.2-1.21.11.1
Intermittent access day 1 locomotion2.02.52.71.6-1.61.61.5
Intermittent access day 15 total locomotion0.10.30.30.5-0.50.50.5
Intermittent access total locomotion0.81.01.01.0-1.01.01.0
Intermittent access standard deviation1.83.73.91.9-1.92.01.9
Left kidney weight0.73.33.8-1.91.9-1.8-1.7
Right kidney weight0.62.62.9-1.71.7-1.6-1.5
Cocaine induced anxiety2.43.43.6-1.81.8-1.9-1.9
Post-drug Anxiety5.05.35.4-2.32.3-2.3-2.3
Baseline Anxiety0.00.00.00.0-0.00.20.2
Tail length3.613.914.2-3.73.7-3.8-3.7
Length with tail5.524.025.0-5.05.0-4.9-4.8
Length without tail2.68.38.9-3.03.0-2.8-2.8
Times rat made contact with spout0.40.40.5-0.70.7-0.6-0.5
Lifetime Intake0.60.70.80.9-0.90.80.8
Liver weight, left2.23.63.8-1.91.9-2.0-1.8
Liver weight, right0.61.11.31.0-1.01.01.1
Locomotor activity0.10.10.2-0.50.4-0.3-0.0
Locomotor testing distance0.20.30.4-0.70.6-0.4-0.2
Locomotor testing rearing1.42.83.71.5-1.51.81.9
Locomotion in novel chamber2.43.13.7-1.71.7-1.9-1.7
Locomotion in novel chamber post-restriction0.00.00.00.2-0.2-0.00.0
Fecal boli incidents, locomotor time 11.31.82.31.5-1.51.31.1
Change in fecal boli incidents, locomotor task0.00.00.1-0.30.2-0.20.1
Time >=10cm from walls, locomotor time 10.40.40.40.6-0.60.70.6
Bouts of movement, locomotor time 11.01.11.41.2-1.21.00.8
Total resting periods, locomotor time 11.11.21.41.2-1.21.00.9
Rest time, locomotor task time 10.10.10.2-0.30.3-0.5-0.3
Distance moved, locomotor task time 10.30.40.60.5-0.50.70.8
Vertical activity count, locomotor time 10.30.70.8-0.90.9-0.7-0.7
Time >=10cm from walls, locomotor time 20.30.50.7-0.70.7-0.7-0.8
Bouts of movement, locomotor time 21.62.53.3-1.41.4-1.7-1.8
Total resting periods, locomotor time 21.01.82.4-1.21.2-1.5-1.6
Rest time, locomotor task time 20.20.30.5-0.40.4-0.7-0.5
Distance moved, locomotor task time 20.20.20.50.4-0.40.70.5
Vertical activity count, locomotor time 20.50.70.9-0.80.8-0.7-0.9
Light reinforcement 10.00.00.10.0-0.00.20.3
Light reinforcement 21.21.82.21.5-1.51.21.2
Bone: marrow area0.20.40.60.7-0.70.60.5
Bone: maximum diameter0.00.00.10.1-0.0-0.2-0.3
Bone: maximum force0.10.10.2-0.20.3-0.4-0.5
Bone: maximum moment0.10.10.2-0.20.2-0.4-0.5
Mean time between licks in bursts0.51.21.21.1-1.11.11.0
Mean num. licks in bursts0.00.00.1-0.30.20.0-0.0
Cd content in liver0.00.00.00.0-0.10.00.0
Co content in liver1.11.31.4-1.11.2-1.1-1.1
Cu content in liver0.50.60.70.8-0.80.80.8
Fe content in liver0.40.40.60.6-0.60.70.8
K content in liver0.40.40.6-0.80.7-0.5-0.5
Mg content in liver0.30.30.4-0.60.6-0.4-0.3
Mn content in liver0.30.30.40.4-0.50.60.6
Na content in liver0.00.00.00.2-0.20.10.2
Rb content in liver0.80.91.0-1.01.0-0.9-1.0
Se content in liver0.10.20.30.5-0.50.20.3
Sr content in liver0.30.30.5-0.40.5-0.6-0.7
Zn content in liver1.61.72.0-1.21.2-1.4-1.4
Bone: minimum diameter0.40.80.9-0.80.9-0.9-0.9
Time in familiar zone, hab. session 10.60.60.90.5-0.50.91.0
Time in novel zone, hab. session 10.10.10.20.5-0.50.00.0
Total zone transitions, hab. session 10.50.70.80.9-0.90.90.8
Total locomotion distance, hab. session 10.00.00.0-0.10.1-0.1-0.1
Locomotion velocity, hab. session 10.40.50.5-0.70.7-0.7-0.7
Time in familiar zone, hab. session 20.70.81.00.8-0.71.01.0
Time in novel zone, hab. session 20.00.00.00.2-0.2-0.1-0.1
Total zone transitions, hab. session 20.50.70.80.9-0.90.80.7
Total locomotion distance, hab. session 20.50.60.8-0.70.7-0.8-0.9
Locomotion velocity, hab. session 20.70.91.2-0.90.9-1.0-1.1
Novel to familiar place preference ratio0.30.30.40.6-0.60.40.4
Novelty place preference0.20.20.20.5-0.50.30.3
Time in novel zone, NPP test0.10.10.20.5-0.40.30.3
Total zone transitions, NPP test0.00.10.10.3-0.30.30.2
Total locomotion distance, NPP test0.00.10.1-0.20.2-0.3-0.3
Locomotion velocity, NPP test0.10.10.1-0.30.3-0.4-0.4
Intraocular pressure0.00.00.00.1-0.10.20.2
Delta distance traveled before/after self-admin0.00.00.0-0.00.00.1-0.1
Delta ambulatory time before/after self-admin0.60.70.9-0.80.8-0.8-0.9
Parametrial fat weight0.30.80.80.9-0.90.80.9
Pavlov. Cond. lever latency0.50.60.7-0.80.8-0.8-0.8
Pavlov. Cond. magazine entry latency0.50.70.80.7-0.80.90.9
Pavlov. Cond. change in total contacts0.30.30.50.5-0.50.70.7
Pavlov. Cond. index score0.81.01.11.0-1.01.01.0
Pavlov. Cond. latency score0.50.60.70.8-0.80.80.8
Pavlov. Cond. lever contacts0.91.11.21.0-1.01.11.1
Pavlov. Cond. magazine entry number0.91.21.3-1.01.0-1.2-1.2
Pavlov. Cond. intertrial magazine entries5.46.56.7-2.52.5-2.6-2.6
Pavlov. Cond. lever-magazine prob. diff.0.60.70.80.8-0.80.90.9
Pavlov. Cond. response bias1.51.92.01.3-1.31.41.4
Pavlov. Cond. lever latency2.23.03.1-1.81.8-1.8-1.7
Pavlov. Cond. magazine entry latency5.26.36.62.5-2.62.52.5
Pavlov. Cond. change in total contacts3.65.96.22.4-2.42.52.5
Pavlov. Cond. index score5.37.17.22.6-2.62.72.7
Pavlov. Cond. latency score5.26.97.12.6-2.62.62.7
Pavlov. Cond. lever contacts3.04.14.32.1-2.12.01.9
Pavlov. Cond. magazine entry number4.75.86.3-2.32.4-2.4-2.5
Pavlov. Cond. intertrial magazine entries4.77.18.1-2.82.8-2.5-2.5
Pavlov. Cond. lever-magazine prob. diff.5.97.98.22.8-2.82.82.9
Pavlov. Cond. response bias4.25.75.82.4-2.42.42.4
Time in closed arm before self-admin1.62.12.31.5-1.51.41.4
Time in closed arm after self-admin0.80.80.90.9-0.90.90.9
Time in open arm before self-admin2.02.22.3-1.51.5-1.5-1.5
Time in open arm after self-admin1.92.12.2-1.51.5-1.5-1.4
Bone: periosteal estimation0.00.10.2-0.10.1-0.4-0.5
Bone: periosteal perimeter0.00.00.10.1-0.1-0.2-0.3
Bone: post-yield work1.01.41.6-1.21.2-1.3-1.2
Progressive ratio test 1 active lever presses0.30.40.40.6-0.60.60.6
Progressive ratio test 1 breakpoint0.40.50.60.7-0.70.80.7
Progressive ratio test 1 inactive lever presses1.01.51.6-1.21.2-1.2-1.3
Progressive ratio test 2 active lever presses0.00.00.1-0.10.2-0.2-0.2
Progressive ratio test 2 breakpoint0.00.00.1-0.10.2-0.2-0.2
Progressive ratio test 2 inactive lever presses0.50.80.9-0.90.9-0.9-0.9
Incentive Sensitization - Responses0.10.10.1-0.20.2-0.4-0.3
Incentive Sensitization - Breakpoint0.10.10.2-0.30.3-0.4-0.4
Sum of active levers in priming session hrs 5-60.10.10.2-0.40.4-0.3-0.3
Progressive ratio0.10.20.3-0.50.5-0.4-0.5
Food seeking constrained by brief footshock2.43.03.5-1.71.7-1.7-1.9
Seeking ratio, punishment vs. effort0.10.10.2-0.30.3-0.4-0.4
Retroperitoneal fat weight0.10.30.40.5-0.50.60.7
Reaction time number correct2.03.94.2-2.12.1-1.9-1.9
Reaction time mean minus median0.00.10.20.4-0.40.20.3
Reaction time mean minus median AUC0.10.20.30.5-0.50.20.3
Reaction time num false alarms0.71.01.2-1.11.1-1.0-0.8
Reaction time num false alarms AUC1.01.61.7-1.31.3-1.3-1.1
Reaction time trials correct on left2.03.94.2-2.12.1-1.9-1.9
Reaction time trials on left2.13.94.2-2.02.0-1.9-1.9
Reaction time mean0.71.11.21.1-1.01.01.1
Reaction time mean AUC0.40.70.80.9-0.80.80.9
Median of all reaction times0.50.70.90.8-0.70.81.0
Reaction time omissions0.40.60.7-0.80.8-0.8-0.7
Reaction time false alarm rate0.10.10.1-0.30.3-0.3-0.2
Reaction time premature initiation rate0.91.21.3-1.11.1-1.1-1.1
Reaction time premature initiations2.03.53.7-1.91.9-1.8-1.8
Std. dev. reaction times0.20.30.50.7-0.70.40.5
Reaction time trials completed2.13.94.2-2.02.0-1.9-1.9
Reaction time trials AUC2.24.24.5-2.12.1-2.0-1.9
Run reversals in cocaine runway, females0.60.60.80.7-0.70.70.9
Run reversals in cocaine runway, males1.21.21.4-1.11.2-1.1-1.1
Latency to leave start box in cocaine runway0.10.20.20.3-0.30.50.5
Latency to leave start box in cocaine runway, F0.10.10.10.2-0.20.40.3
Latency to leave start box in cocaine runway, M0.10.10.10.3-0.20.20.3
Std. dev. time between licks in bursts0.60.81.01.0-1.00.90.8
Total sessions with >9 infusions0.30.40.50.7-0.60.70.6
Short access day 1 total inactive lever presses0.00.00.00.1-0.10.10.1
Short access day 10 total inactive lever presses0.00.10.10.3-0.30.10.1
Short access day 1 total infusions0.10.20.2-0.40.4-0.4-0.4
Short access day 10 total infusions1.01.31.31.2-1.21.11.1
Short access total infusions0.30.40.40.6-0.60.60.6
Short access day 1 locomotion0.50.60.70.8-0.80.80.8
Short access day 10 total locomotion2.03.73.92.0-2.01.91.9
Short access total locomotion0.40.40.50.7-0.70.70.7
One hour access (0.3 mA shock)0.00.00.00.1-0.1-0.1-0.1
Compulsive drug intake0.00.00.0-0.00.0-0.1-0.1
One hour access (shock baseline)0.00.00.00.1-0.10.0-0.0
Social response proportion0.20.20.2-0.50.5-0.4-0.4
Social responses0.00.00.10.1-0.10.20.3
Social time0.71.01.0-0.90.9-1.0-1.0
Soleus weight0.10.20.40.3-0.30.50.6
Bone: stiffness0.91.51.8-1.11.2-1.3-1.3
Tibialis anterior weight0.20.60.7-0.80.8-0.8-0.8
Time to tail flick, vehicle, before self-admin0.30.30.4-0.50.5-0.6-0.6
Time to tail flick, vehicle, after self-admin0.40.60.60.7-0.70.80.8
Time to tail flick, test, before self-admin0.00.00.10.0-0.0-0.1-0.3
Time to tail flick, test, after self-admin0.70.80.8-0.90.9-0.9-0.9
Delta time to tail flick, vehicle, before/after SA0.00.00.00.1-0.10.20.1
Delta time to tail flick, test, before/after SA0.40.40.4-0.70.7-0.7-0.5
Tibia length0.61.52.2-1.01.1-1.3-1.5
Ambulatory time before self-admin0.61.01.11.0-1.00.91.1
Ambulatory time after self-admin0.10.10.20.4-0.40.40.4
Bone: tissue strength0.30.30.5-0.40.4-0.6-0.7
Total heroin consumption3.03.63.7-1.91.9-1.8-1.9
Bone: trabecular number0.00.00.0-0.00.00.10.1
Bone: trabecular spacing0.00.00.00.1-0.1-0.1-0.1
Bone: trabecular thickness0.00.00.10.2-0.20.30.2
Bone: trabecular tissue density0.10.10.2-0.50.5-0.1-0.1
Water consumed over 24 hours2.63.53.7-1.91.9-1.8-1.8
Number of responses in last shaping day0.10.10.10.3-0.30.30.3