Adamtsl5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Adamtsl5 0.02 0.02 6.0e-03 0.02 0.02 0.02 0.02 2.8e-03 3.3e-03 4.8e-03 3.2e-03
2 BLA intron excision ratio chr7_9366295_9367462 0.12 0.08 3.0e-03 0.01 0.02 0 0.01 6.2e-02 3.7e-02 1.8e-01 1.1e-01
3 pVTA intron excision ratio chr7_9364359_9365410 0.12 0.09 5.6e-03 0.05 0.04 0.06 0.04 2.2e-03 1.2e-02 1.8e-03 6.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.64.36.4-0.62.52.5
Area under the delay curve1.21.33.1-1.80.80.4
BMI with tail2.47.920.9-4.61.3-1.0
BMI without tail1.12.33.9-2.0-0.5-1.6
Body weight0.41.74.6-2.10.5-0.5
Weight adjusted by age0.80.91.7-0.2-1.1-1.3
Bone surface4.57.913.3-0.33.23.6
Bone volume4.67.913.4-0.33.23.7
Breakpoint value in progressive ratio session3.33.77.42.7-1.7-0.8
Number of licking bursts1.01.12.00.2-1.2-1.4
Context. condit. distance diff. score0.10.10.3-0.6-0.1-0.3
Locomotion velocity, session 11.01.12.10.41.01.5
Locomotion distance, session 12.43.14.9-0.22.22.1
Locomotion velocity, session 22.52.94.81.51.22.2
Locomotion distance, session 22.53.45.70.91.92.4
Locomotion velocity, session 32.73.17.22.7-1.5-0.1
Locomotion distance, session 30.10.10.20.0-0.4-0.3
Stereotopy head waving bouts, day 31.61.94.92.2-0.20.8
Stereotopy head waving duration, day 32.02.36.32.5-0.70.6
Locomotion velocity, session 70.30.40.70.8-0.50.4
Locomotion distance, session 70.50.60.9-0.1-1.0-0.9
Stereotopy head waving bouts, day 71.01.11.9-0.31.21.4
Stereotopy head waving duration, day 71.11.32.50.11.21.6
Locomotion velocity, session 82.02.34.30.31.62.1
Locomotion distance, session 80.30.40.60.20.70.8
Degree of sensitization distance0.20.20.4-0.60.30.0
Degree of sensitization stereotypy1.71.92.7-1.61.41.0
Conditioned locomotion1.11.32.2-1.0-0.8-1.5
Cocaine response after cond. corrected2.42.74.3-2.1-0.9-1.8
Cocaine response after cond. not corrected2.73.04.4-2.1-1.0-1.9
Cocaine response before conditioning0.20.20.50.7-0.00.4
Saline control response0.00.10.1-0.1-0.1-0.4
Bone: connectivity density1.93.04.5-1.02.11.9
Bone: cortical apparent density0.30.41.0-1.00.4-0.1
Bone: cortical area1.11.62.0-1.11.41.3
Bone: cortical porosity0.50.50.80.60.50.9
Bone: cortical porosity1.21.32.1-0.11.31.4
Bone: cortical thickness0.81.42.1-1.51.20.7
Bone: cortical thickness0.70.81.40.3-1.2-1.0
Bone: cortical tissue density0.20.20.6-0.80.3-0.1
Condit. Reinf. active minus inactive responses1.61.84.52.1-0.90.2
Condit. Reinf. active-inactive response ratio1.61.82.71.6-1.5-0.6
Condit. Reinf. active responses1.31.63.51.90.21.1
Condit. Reinf. inactive responses1.21.52.30.61.31.5
Incentive salience index mean0.81.01.91.40.21.0
Condit. Reinf. lever presses2.33.04.7-0.42.22.1
Condit. Reinf. active minus inactive responses2.12.63.71.9-1.8-0.9
Condit. Reinf. active-inactive response ratio1.51.62.30.6-1.5-1.5
Condit. Reinf. active responses1.21.73.41.8-1.3-0.2
Condit. Reinf. inactive responses0.50.61.21.1-0.50.5
Condit. Reinf. lever presses1.82.43.82.0-1.7-0.8
Condit. Reinf. lever reinforcers received1.31.92.81.7-1.6-0.5
Conditioned reinforcement - actives1.11.13.01.7-0.60.1
Conditioned reinforcement - inactives0.30.30.4-0.5-0.4-0.7
Conditioned locomotion3.23.89.83.1-1.30.0
Patch foraging indifference point 0 sec0.10.20.3-0.50.60.4
Patch foraging indifference point AUC0.60.61.31.1-0.7-0.4
Delay disc. indifference point, 0s delay7.48.110.4-3.13.22.0
Delay disc. indifference point, 16s delay0.10.10.3-0.50.20.1
Delay disc. indifference point, 2s delay3.53.97.3-2.71.90.9
Delay disc. indifference point, 24s delay0.30.30.8-0.90.0-0.4
Delay disc. indifference point, 4s delay1.21.21.9-1.41.00.9
Delay disc. indifference point, 8s delay0.40.51.1-1.1-0.2-0.5
Indifference point function ln k0.10.10.3-0.6-0.1-0.0
Indifference point function log k0.10.10.3-0.6-0.1-0.0
Patch foraging total patch changes 0 sec0.10.10.2-0.40.30.2
Patch foraging total patch changes 12 sec0.40.61.3-0.3-0.5-1.1
Patch foraging total patch changes 18 sec0.50.61.51.2-0.6-0.1
Patch foraging total patch changes 24 sec0.00.00.10.30.0-0.1
Patch foraging total patch changes 6 sec0.10.10.30.60.00.2
Patch foraging time to switch 0 sec2.53.85.9-1.72.41.6
Patch foraging water rate 0 sec1.62.64.30.5-2.1-1.8
Patch foraging water rate 12 sec1.52.23.9-0.8-1.5-2.0
Patch foraging water rate 18 sec4.96.79.90.9-3.1-3.0
Patch foraging water rate 24 sec3.75.28.50.0-2.6-2.9
Patch foraging water rate 6 sec2.33.35.11.0-2.3-1.9
Seeking ratio, delayed vs. immediate footshock1.61.84.72.2-0.40.7
Distance traveled before self-admin0.50.50.8-0.70.90.6
Distance traveled after self-admin0.30.30.60.80.10.4
Extensor digitorum longus weight1.76.616.8-4.10.3-1.7
Bone: elastic displacement0.10.10.20.5-0.00.3
Bone: elastic work0.30.30.4-0.60.50.7
Bone: endosteal estimation0.20.40.6-0.80.60.6
Bone: endosteal perimeter0.30.61.20.40.51.1
Epididymis fat weight0.30.70.80.8-0.8-0.9
Delta time in closed arm before/after self-admin3.23.15.8-0.3-1.9-2.4
Delta time in open arm before/after self-admin1.01.01.6-1.31.00.6
Diff in mean of infusions in LGA sessions0.70.82.01.4-0.6-0.1
Delay discount exponential model param1.11.12.71.7-0.7-0.3
Extinction: sum of active levers before priming2.02.02.31.5-1.4-1.3
Active lever presses in extinction session 61.21.23.31.8-0.40.3
Bone: final force1.11.82.6-1.61.31.0
Bone: final moment0.91.52.1-1.41.21.0
Food consumed during 24 hour testing period0.20.20.5-0.7-0.0-0.2
Glucose0.50.72.0-1.40.4-0.3
Heart weight0.70.91.30.8-1.1-0.9
Delay discount hyperbolic model param1.51.63.71.9-0.9-0.4
Intermittent access intake day 1-15 change3.53.47.92.8-1.5-0.3
Intermittent access intake escalation5.25.18.52.9-2.3-1.2
Intermittent access intake escalation 26.05.910.03.2-2.5-1.4
Intermitt. access day 1 inactive lever presses0.80.91.30.7-1.1-0.9
Intermitt. access day 15 inactive lever presses0.40.50.70.8-0.7-0.4
Intermitt. access escalation Index1.31.21.6-0.71.31.2
Intermittent access day 1 total infusions0.00.00.0-0.20.20.2
Intermittent access day 15 total infusions1.51.73.11.8-1.3-0.6
Intermittent access terminal intake (last 3 days)0.70.81.71.3-0.7-0.2
Intermittent access total infusions0.20.30.50.7-0.5-0.2
Intermittent access day 1 locomotion0.30.30.50.7-0.5-0.2
Intermittent access day 15 total locomotion1.81.94.52.1-1.1-0.2
Intermittent access total locomotion0.50.51.41.2-0.40.1
Intermittent access standard deviation2.22.34.22.1-1.5-0.6
Left kidney weight0.20.40.80.00.70.9
Right kidney weight0.61.54.12.0-0.60.5
Cocaine induced anxiety0.81.01.50.61.01.2
Post-drug Anxiety0.91.01.90.31.01.4
Baseline Anxiety0.60.61.10.3-1.1-0.8
Tail length1.64.910.73.3-1.9-0.5
Length with tail0.72.66.92.6-0.60.8
Length without tail0.61.32.50.01.21.6
Times rat made contact with spout0.40.50.8-0.3-0.7-0.9
Lifetime Intake0.10.10.20.5-0.3-0.1
Liver weight, left0.91.53.7-1.90.4-0.9
Liver weight, right0.81.43.1-1.71.00.0
Locomotor activity1.52.34.52.10.51.5
Locomotor testing distance0.81.33.11.80.10.9
Locomotor testing rearing0.30.50.70.3-0.8-0.8
Locomotion in novel chamber0.60.70.80.8-0.8-0.9
Locomotion in novel chamber post-restriction0.60.71.01.0-1.0-0.3
Fecal boli incidents, locomotor time 10.60.71.3-1.10.2-0.8
Change in fecal boli incidents, locomotor task0.50.51.30.40.41.1
Time >=10cm from walls, locomotor time 11.31.32.1-0.71.51.1
Bouts of movement, locomotor time 10.10.20.20.5-0.5-0.2
Total resting periods, locomotor time 10.10.10.30.5-0.40.0
Rest time, locomotor task time 10.10.10.20.40.10.4
Distance moved, locomotor task time 11.31.41.9-0.91.41.2
Vertical activity count, locomotor time 10.10.20.3-0.2-0.5-0.4
Time >=10cm from walls, locomotor time 20.40.40.9-1.00.0-0.6
Bouts of movement, locomotor time 20.80.81.50.40.91.2
Total resting periods, locomotor time 20.80.91.70.31.01.3
Rest time, locomotor task time 20.30.40.60.60.40.8
Distance moved, locomotor task time 20.30.40.6-0.8-0.1-0.7
Vertical activity count, locomotor time 20.80.91.7-0.5-0.8-1.3
Light reinforcement 11.93.59.63.1-0.60.7
Light reinforcement 20.70.92.31.5-0.10.6
Bone: marrow area0.20.40.7-0.80.60.6
Bone: maximum diameter0.61.22.30.80.81.5
Bone: maximum force0.81.42.6-1.61.00.8
Bone: maximum moment0.71.22.1-1.50.90.8
Mean time between licks in bursts2.23.16.52.6-1.5-0.6
Mean num. licks in bursts0.10.20.3-0.30.40.5
Cd content in liver0.20.20.2-0.50.50.3
Co content in liver0.30.40.80.9-0.6-0.3
Cu content in liver1.11.31.8-0.61.31.3
Fe content in liver0.20.30.40.3-0.6-0.6
K content in liver1.31.32.0-0.31.41.3
Mg content in liver1.41.42.2-0.41.51.4
Mn content in liver3.03.46.60.51.92.6
Na content in liver1.81.93.0-1.21.71.1
Rb content in liver1.62.02.8-0.91.71.5
Se content in liver0.10.10.20.40.10.3
Sr content in liver1.00.91.40.3-1.1-1.2
Zn content in liver3.84.35.71.8-2.4-2.0
Bone: minimum diameter0.20.40.8-0.30.70.9
Time in familiar zone, hab. session 11.61.52.41.6-1.4-0.6
Time in novel zone, hab. session 11.81.72.2-1.21.51.3
Total zone transitions, hab. session 11.31.83.10.71.31.8
Total locomotion distance, hab. session 12.63.76.90.61.92.6
Locomotion velocity, hab. session 12.02.84.81.01.62.2
Time in familiar zone, hab. session 24.44.67.62.8-2.2-1.1
Time in novel zone, hab. session 23.73.75.7-2.42.01.2
Total zone transitions, hab. session 23.34.37.2-0.82.72.2
Total locomotion distance, hab. session 21.31.82.80.71.41.7
Locomotion velocity, hab. session 22.02.74.30.61.92.1
Novel to familiar place preference ratio4.24.35.5-2.32.31.5
Novelty place preference3.13.14.0-1.92.01.4
Time in novel zone, NPP test3.03.03.9-2.01.91.3
Total zone transitions, NPP test1.21.63.1-0.31.81.3
Total locomotion distance, NPP test1.62.13.5-0.51.91.6
Locomotion velocity, NPP test1.41.93.1-0.21.81.6
Intraocular pressure1.92.74.10.4-1.9-2.0
Delta distance traveled before/after self-admin0.60.71.71.3-0.50.1
Delta ambulatory time before/after self-admin0.60.71.71.3-0.30.4
Parametrial fat weight0.40.71.21.1-0.9-0.4
Pavlov. Cond. lever latency1.01.31.90.4-1.4-1.4
Pavlov. Cond. magazine entry latency1.31.74.12.0-1.0-0.3
Pavlov. Cond. change in total contacts0.00.00.00.20.20.2
Pavlov. Cond. index score0.30.40.70.50.50.8
Pavlov. Cond. latency score0.70.81.50.40.91.2
Pavlov. Cond. lever contacts1.41.62.5-0.21.51.6
Pavlov. Cond. magazine entry number0.20.30.8-0.90.3-0.0
Pavlov. Cond. intertrial magazine entries0.80.91.30.6-1.2-1.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.80.30.7
Pavlov. Cond. response bias0.40.51.31.1-0.30.1
Pavlov. Cond. lever latency0.40.51.1-1.10.6-0.2
Pavlov. Cond. magazine entry latency0.20.20.50.7-0.30.2
Pavlov. Cond. change in total contacts0.40.61.21.1-0.8-0.1
Pavlov. Cond. index score0.50.61.21.1-0.8-0.0
Pavlov. Cond. latency score0.30.41.01.0-0.50.2
Pavlov. Cond. lever contacts0.60.81.21.1-1.1-0.3
Pavlov. Cond. magazine entry number0.30.30.8-0.90.4-0.2
Pavlov. Cond. intertrial magazine entries0.30.40.7-0.4-0.6-0.8
Pavlov. Cond. lever-magazine prob. diff.0.40.51.11.1-0.60.2
Pavlov. Cond. response bias1.21.62.81.7-1.4-0.4
Time in closed arm before self-admin2.12.33.5-1.21.91.5
Time in closed arm after self-admin0.10.10.10.1-0.3-0.3
Time in open arm before self-admin0.70.71.31.1-0.8-0.4
Time in open arm after self-admin0.30.30.9-0.90.3-0.1
Bone: periosteal estimation0.81.61.9-1.11.41.4
Bone: periosteal perimeter0.61.02.1-0.01.01.4
Bone: post-yield work0.20.30.7-0.8-0.0-0.3
Progressive ratio test 1 active lever presses0.20.20.3-0.1-0.5-0.5
Progressive ratio test 1 breakpoint0.10.10.2-0.2-0.4-0.4
Progressive ratio test 1 inactive lever presses0.00.00.00.1-0.00.2
Progressive ratio test 2 active lever presses0.60.60.90.7-1.0-0.7
Progressive ratio test 2 breakpoint0.30.30.50.7-0.6-0.2
Progressive ratio test 2 inactive lever presses0.10.10.10.30.10.2
Incentive Sensitization - Responses0.70.70.80.7-0.9-0.8
Incentive Sensitization - Breakpoint0.60.60.70.7-0.8-0.7
Sum of active levers in priming session hrs 5-60.00.00.00.10.20.0
Progressive ratio0.20.20.5-0.4-0.2-0.7
Food seeking constrained by brief footshock0.10.10.10.30.30.1
Seeking ratio, punishment vs. effort0.20.20.40.30.40.6
Retroperitoneal fat weight0.10.40.9-1.0-0.1-0.5
Reaction time number correct1.11.62.5-0.5-1.4-1.6
Reaction time mean minus median0.40.50.91.0-0.8-0.2
Reaction time mean minus median AUC0.60.81.5-0.30.91.2
Reaction time num false alarms0.50.71.2-0.1-1.1-0.9
Reaction time num false alarms AUC0.81.11.7-0.1-1.3-1.2
Reaction time trials correct on left1.11.62.5-0.5-1.4-1.6
Reaction time trials on left1.01.42.2-0.5-1.3-1.5
Reaction time mean0.20.30.6-0.30.50.8
Reaction time mean AUC0.30.40.7-0.30.60.8
Median of all reaction times0.50.70.8-0.80.90.8
Reaction time omissions0.10.20.30.50.20.4
Reaction time false alarm rate0.00.00.0-0.1-0.1-0.0
Reaction time premature initiation rate1.11.41.91.4-1.3-0.8
Reaction time premature initiations2.13.04.61.2-2.2-1.7
Std. dev. reaction times0.10.10.20.4-0.20.3
Reaction time trials completed1.01.42.2-0.5-1.3-1.5
Reaction time trials AUC1.31.93.0-0.4-1.6-1.7
Run reversals in cocaine runway, females0.20.20.30.50.10.5
Run reversals in cocaine runway, males0.50.41.01.0-0.10.6
Latency to leave start box in cocaine runway1.21.32.20.81.01.5
Latency to leave start box in cocaine runway, F2.62.94.5-0.22.02.1
Latency to leave start box in cocaine runway, M2.92.83.51.9-1.8-1.2
Std. dev. time between licks in bursts0.40.50.90.80.21.0
Total sessions with >9 infusions0.20.20.40.00.50.6
Short access day 1 total inactive lever presses0.00.00.10.3-0.00.0
Short access day 10 total inactive lever presses0.20.20.30.3-0.4-0.6
Short access day 1 total infusions0.40.40.80.30.70.9
Short access day 10 total infusions0.20.20.40.3-0.6-0.3
Short access total infusions0.00.00.10.10.20.2
Short access day 1 locomotion0.60.61.01.00.20.9
Short access day 10 total locomotion2.52.86.12.5-1.4-0.4
Short access total locomotion0.50.51.31.1-0.20.3
One hour access (0.3 mA shock)0.00.00.1-0.3-0.00.0
Compulsive drug intake1.11.11.5-1.21.20.6
One hour access (shock baseline)0.50.51.10.5-1.0-0.6
Social response proportion0.40.50.60.70.60.8
Social responses2.53.38.42.9-0.31.1
Social time0.30.40.7-0.90.7-0.1
Soleus weight3.510.227.1-5.21.8-0.5
Bone: stiffness1.62.65.5-2.31.40.6
Tibialis anterior weight0.51.74.4-2.10.7-0.2
Time to tail flick, vehicle, before self-admin0.80.81.60.40.91.3
Time to tail flick, vehicle, after self-admin1.31.42.00.5-1.4-1.4
Time to tail flick, test, before self-admin0.80.81.50.20.91.2
Time to tail flick, test, after self-admin0.20.20.40.30.30.7
Delta time to tail flick, vehicle, before/after SA1.91.93.5-0.3-1.4-1.9
Delta time to tail flick, test, before/after SA0.70.71.00.4-1.0-0.9
Tibia length0.41.22.91.7-0.9-0.1
Ambulatory time before self-admin0.30.30.5-0.60.70.4
Ambulatory time after self-admin0.20.20.30.60.10.4
Bone: tissue strength1.01.01.8-1.41.00.3
Total heroin consumption0.80.92.51.6-0.50.1
Bone: trabecular number1.01.63.10.61.21.8
Bone: trabecular spacing3.14.07.0-0.1-2.3-2.6
Bone: trabecular thickness6.57.811.9-0.73.33.4
Bone: trabecular tissue density0.70.91.9-1.40.1-0.9
Water consumed over 24 hours0.91.11.3-1.01.11.1
Number of responses in last shaping day0.10.10.40.6-0.20.2