Acy3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Acy3 0.14 0.1 5.6e-04 0.02 0.01 0.02 0.02 1.0e-03 1.4e-02 3.3e-03 3.7e-03
2 Liver gene expression Acy3 0.69 0.12 0.0e+00 0.54 0.58 0.58 0.58 2.1e-71 4.6e-79 3.9e-80 8.9e-79
3 Liver alternative TSS XM_039108226.1 0.02 0.02 5.9e-03 0 0.01 0 0 1.3e-01 2.7e-02 2.7e-01 1.5e-01
4 Liver alternative TSS XM_039108222.1 0.02 0.02 6.7e-03 0 0.01 0 0 2.0e-01 3.1e-02 2.2e-01 1.6e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.44.05.3-1.5-1.8-2.32.3
Area under the delay curve1.11.21.5-0.9-1.0-1.21.2
BMI with tail0.72.34.2-0.2-0.9-2.02.1
BMI without tail0.40.81.4-0.1-0.5-1.21.2
Body weight0.52.05.32.31.60.2-0.2
Weight adjusted by age0.50.50.91.00.90.4-0.4
Bone surface1.22.13.7-0.6-0.9-1.91.9
Bone volume1.62.73.9-1.1-1.4-2.02.0
Breakpoint value in progressive ratio session0.40.41.21.10.80.1-0.1
Number of licking bursts0.10.10.1-0.2-0.2-0.30.3
Context. condit. distance diff. score0.70.81.4-1.2-0.9-0.70.7
Locomotion velocity, session 10.00.00.0-0.0-0.0-0.10.1
Locomotion distance, session 11.11.42.0-0.7-0.9-1.41.4
Locomotion velocity, session 20.70.81.71.31.10.5-0.5
Locomotion distance, session 20.10.20.30.2-0.1-0.60.6
Locomotion velocity, session 31.61.92.4-1.1-1.3-1.51.5
Locomotion distance, session 30.10.10.1-0.3-0.3-0.40.4
Stereotopy head waving bouts, day 31.92.32.5-1.4-1.5-1.61.6
Stereotopy head waving duration, day 31.51.82.1-1.5-1.4-1.31.3
Locomotion velocity, session 71.31.41.7-1.0-1.1-1.31.3
Locomotion distance, session 70.00.00.10.0-0.1-0.30.3
Stereotopy head waving bouts, day 72.02.22.4-1.4-1.6-1.51.5
Stereotopy head waving duration, day 71.11.42.1-0.6-1.0-1.41.4
Locomotion velocity, session 80.30.40.80.90.70.2-0.2
Locomotion distance, session 80.50.70.8-0.9-0.8-0.80.8
Degree of sensitization distance0.10.10.2-0.2-0.3-0.50.5
Degree of sensitization stereotypy0.50.60.8-0.4-0.7-0.90.9
Conditioned locomotion4.24.95.82.42.42.0-2.0
Cocaine response after cond. corrected0.10.10.2-0.4-0.4-0.30.3
Cocaine response after cond. not corrected0.60.60.7-0.7-0.8-0.80.8
Cocaine response before conditioning0.10.10.2-0.2-0.4-0.40.4
Saline control response0.50.71.61.31.00.3-0.3
Bone: connectivity density1.62.44.1-0.7-1.1-2.02.0
Bone: cortical apparent density0.50.61.01.00.80.6-0.6
Bone: cortical area0.91.31.51.21.21.1-1.1
Bone: cortical porosity0.10.10.1-0.3-0.2-0.30.3
Bone: cortical porosity0.00.00.10.30.30.1-0.1
Bone: cortical thickness5.38.711.03.33.22.6-2.6
Bone: cortical thickness1.92.23.11.71.61.2-1.2
Bone: cortical tissue density0.60.81.21.10.90.7-0.7
Condit. Reinf. active minus inactive responses0.40.40.5-0.5-0.5-0.70.7
Condit. Reinf. active-inactive response ratio0.40.40.4-0.6-0.6-0.70.7
Condit. Reinf. active responses0.00.10.1-0.2-0.2-0.30.3
Condit. Reinf. inactive responses0.00.00.10.10.10.2-0.2
Incentive salience index mean0.20.20.3-0.3-0.3-0.60.6
Condit. Reinf. lever presses0.10.10.10.20.30.3-0.3
Condit. Reinf. active minus inactive responses2.22.73.1-1.6-1.8-1.61.6
Condit. Reinf. active-inactive response ratio2.02.12.8-1.7-1.6-1.21.2
Condit. Reinf. active responses2.02.83.2-1.4-1.7-1.81.8
Condit. Reinf. inactive responses0.40.50.9-0.2-0.5-1.01.0
Condit. Reinf. lever presses0.30.50.8-0.2-0.4-0.90.9
Condit. Reinf. lever reinforcers received1.82.63.1-1.3-1.6-1.81.8
Conditioned reinforcement - actives0.20.20.40.20.20.6-0.6
Conditioned reinforcement - inactives1.41.63.1-1.7-1.6-0.50.5
Conditioned locomotion0.60.71.7-1.3-0.70.6-0.6
Patch foraging indifference point 0 sec0.20.30.6-0.7-0.8-0.40.4
Patch foraging indifference point AUC1.21.42.01.31.41.0-1.0
Delay disc. indifference point, 0s delay2.12.32.6-1.3-1.5-1.61.6
Delay disc. indifference point, 16s delay0.90.91.6-1.3-1.0-0.70.7
Delay disc. indifference point, 2s delay0.90.91.1-1.0-0.9-1.01.0
Delay disc. indifference point, 24s delay0.50.50.70.80.60.6-0.6
Delay disc. indifference point, 4s delay0.40.40.5-0.5-0.5-0.70.7
Delay disc. indifference point, 8s delay0.30.30.5-0.3-0.5-0.70.7
Indifference point function ln k0.81.22.5-1.6-1.3-0.40.4
Indifference point function log k0.81.22.5-1.6-1.3-0.40.4
Patch foraging total patch changes 0 sec0.00.00.0-0.1-0.10.2-0.2
Patch foraging total patch changes 12 sec0.60.81.61.31.10.5-0.5
Patch foraging total patch changes 18 sec0.00.00.00.10.0-0.20.1
Patch foraging total patch changes 24 sec0.81.01.31.11.10.8-0.8
Patch foraging total patch changes 6 sec0.10.20.30.1-0.3-0.60.6
Patch foraging time to switch 0 sec1.21.93.1-0.6-1.0-1.81.8
Patch foraging water rate 0 sec1.21.93.60.10.71.9-1.9
Patch foraging water rate 12 sec1.21.83.4-0.20.61.9-1.9
Patch foraging water rate 18 sec0.10.20.2-0.5-0.00.5-0.5
Patch foraging water rate 24 sec1.11.52.60.40.81.6-1.6
Patch foraging water rate 6 sec1.11.62.60.51.01.6-1.6
Seeking ratio, delayed vs. immediate footshock0.60.71.0-0.7-0.7-1.01.0
Distance traveled before self-admin0.00.00.1-0.10.1-0.30.3
Distance traveled after self-admin0.00.00.1-0.2-0.2-0.20.2
Extensor digitorum longus weight2.510.018.54.33.72.0-2.0
Bone: elastic displacement2.83.14.11.31.62.0-2.0
Bone: elastic work2.83.64.12.02.01.7-1.7
Bone: endosteal estimation2.14.65.9-2.4-2.3-1.91.9
Bone: endosteal perimeter4.49.111.6-3.4-3.2-2.72.7
Epididymis fat weight0.92.14.3-2.1-1.7-0.80.8
Delta time in closed arm before/after self-admin1.21.21.91.41.10.9-0.9
Delta time in open arm before/after self-admin0.20.20.4-0.6-0.5-0.40.4
Diff in mean of infusions in LGA sessions0.40.40.70.70.80.5-0.5
Delay discount exponential model param0.70.81.00.70.81.0-1.0
Extinction: sum of active levers before priming0.30.30.70.80.5-0.30.3
Active lever presses in extinction session 62.62.53.01.71.71.4-1.4
Bone: final force0.10.20.60.80.6-0.10.1
Bone: final moment0.10.20.50.70.6-0.10.1
Food consumed during 24 hour testing period0.10.10.20.00.10.4-0.4
Glucose3.04.55.5-2.3-2.2-2.02.0
Heart weight0.91.22.1-1.5-1.3-0.80.8
Delay discount hyperbolic model param0.80.81.00.70.71.0-1.0
Intermittent access intake day 1-15 change0.10.10.3-0.6-0.10.3-0.3
Intermittent access intake escalation0.30.30.8-0.9-0.4-0.10.1
Intermittent access intake escalation 20.10.10.2-0.5-0.10.3-0.3
Intermitt. access day 1 inactive lever presses0.50.61.0-0.9-1.0-0.50.5
Intermitt. access day 15 inactive lever presses1.41.52.1-1.5-1.5-0.90.9
Intermitt. access escalation Index0.30.20.8-0.9-0.30.1-0.1
Intermittent access day 1 total infusions7.08.19.8-2.9-3.1-2.72.7
Intermittent access day 15 total infusions4.45.07.9-2.8-2.6-1.61.6
Intermittent access terminal intake (last 3 days)4.65.07.1-2.7-2.5-1.81.8
Intermittent access total infusions4.14.55.7-2.4-2.4-1.91.9
Intermittent access day 1 locomotion4.34.55.4-2.0-2.3-2.12.1
Intermittent access day 15 total locomotion2.52.64.5-2.1-1.8-1.21.2
Intermittent access total locomotion6.27.19.6-3.1-2.9-2.32.3
Intermittent access standard deviation0.10.20.4-0.7-0.4-0.10.1
Left kidney weight0.10.20.3-0.4-0.10.6-0.6
Right kidney weight0.30.81.40.20.41.2-1.2
Cocaine induced anxiety0.00.00.0-0.0-0.10.0-0.0
Post-drug Anxiety1.21.31.91.41.21.0-1.0
Baseline Anxiety1.51.62.21.51.51.0-1.0
Tail length1.44.25.32.32.11.9-1.9
Length with tail1.96.910.33.22.92.1-2.1
Length without tail1.12.44.22.01.81.1-1.1
Times rat made contact with spout0.20.30.5-0.1-0.3-0.70.7
Lifetime Intake3.64.05.3-2.2-2.3-1.81.8
Liver weight, left0.00.00.1-0.3-0.1-0.10.1
Liver weight, right0.20.40.60.40.50.8-0.8
Locomotor activity0.10.10.3-0.1-0.00.5-0.5
Locomotor testing distance0.10.10.2-0.2-0.10.5-0.5
Locomotor testing rearing0.71.11.7-1.3-1.1-0.90.9
Locomotion in novel chamber2.73.36.0-2.5-2.0-1.21.2
Locomotion in novel chamber post-restriction0.70.81.8-1.3-1.1-0.40.4
Fecal boli incidents, locomotor time 10.00.00.1-0.2-0.2-0.10.1
Change in fecal boli incidents, locomotor task0.00.00.10.1-0.1-0.30.3
Time >=10cm from walls, locomotor time 14.95.05.7-2.4-2.4-2.12.1
Bouts of movement, locomotor time 11.21.41.71.21.31.1-1.1
Total resting periods, locomotor time 10.91.01.20.91.11.0-1.0
Rest time, locomotor task time 10.30.30.6-0.10.20.8-0.8
Distance moved, locomotor task time 11.01.11.5-0.7-0.9-1.21.2
Vertical activity count, locomotor time 11.21.31.7-1.3-1.3-1.01.0
Time >=10cm from walls, locomotor time 20.00.00.1-0.10.00.3-0.3
Bouts of movement, locomotor time 20.30.40.80.90.60.4-0.4
Total resting periods, locomotor time 20.10.10.30.50.20.1-0.1
Rest time, locomotor task time 22.02.33.1-1.8-1.7-1.21.2
Distance moved, locomotor task time 21.11.21.61.21.31.0-1.0
Vertical activity count, locomotor time 22.72.93.41.51.71.8-1.8
Light reinforcement 10.00.10.1-0.40.10.3-0.3
Light reinforcement 20.20.20.7-0.8-0.40.2-0.2
Bone: marrow area2.14.65.9-2.4-2.3-1.91.9
Bone: maximum diameter0.00.00.1-0.10.00.2-0.2
Bone: maximum force0.71.32.3-0.4-0.7-1.51.5
Bone: maximum moment0.61.01.8-0.3-0.6-1.31.3
Mean time between licks in bursts0.40.51.01.00.80.5-0.5
Mean num. licks in bursts0.10.10.1-0.2-0.3-0.30.3
Cd content in liver0.20.20.5-0.7-0.40.1-0.1
Co content in liver0.80.91.30.60.81.1-1.1
Cu content in liver0.20.20.30.50.40.4-0.4
Fe content in liver0.00.00.00.10.20.1-0.1
K content in liver0.70.71.2-0.2-0.5-1.11.1
Mg content in liver3.53.64.3-1.6-1.8-2.12.1
Mn content in liver0.20.20.60.80.50.1-0.1
Na content in liver0.50.50.60.60.80.7-0.7
Rb content in liver3.84.75.5-2.2-2.3-2.12.1
Se content in liver1.01.31.4-1.1-1.1-1.21.2
Sr content in liver2.62.43.11.81.71.3-1.3
Zn content in liver0.30.40.70.80.70.4-0.4
Bone: minimum diameter2.85.25.7-2.3-2.4-2.22.2
Time in familiar zone, hab. session 10.70.70.8-0.9-0.9-0.70.7
Time in novel zone, hab. session 10.10.10.10.40.40.3-0.3
Total zone transitions, hab. session 10.00.00.10.30.1-0.20.2
Total locomotion distance, hab. session 10.40.50.8-0.9-0.8-0.60.6
Locomotion velocity, hab. session 10.10.10.2-0.4-0.3-0.30.3
Time in familiar zone, hab. session 21.21.21.41.21.21.1-1.1
Time in novel zone, hab. session 21.51.51.7-1.1-1.2-1.31.3
Total zone transitions, hab. session 22.33.04.5-1.0-1.4-2.12.1
Total locomotion distance, hab. session 21.52.02.4-1.2-1.3-1.51.5
Locomotion velocity, hab. session 21.62.22.4-1.4-1.4-1.61.6
Novel to familiar place preference ratio0.40.40.5-0.4-0.6-0.70.7
Novelty place preference0.60.60.7-0.6-0.8-0.90.9
Time in novel zone, NPP test0.60.60.8-0.6-0.8-0.90.9
Total zone transitions, NPP test0.30.50.9-0.2-0.3-0.90.9
Total locomotion distance, NPP test0.40.60.7-0.7-0.7-0.80.8
Locomotion velocity, NPP test0.30.40.4-0.6-0.5-0.60.6
Intraocular pressure0.60.91.30.50.71.1-1.1
Delta distance traveled before/after self-admin0.00.00.0-0.1-0.10.1-0.1
Delta ambulatory time before/after self-admin0.10.10.10.30.20.3-0.3
Parametrial fat weight1.83.65.4-2.3-2.0-1.61.6
Pavlov. Cond. lever latency0.00.00.10.1-0.10.3-0.3
Pavlov. Cond. magazine entry latency1.51.92.1-1.3-1.3-1.41.4
Pavlov. Cond. change in total contacts1.01.01.4-1.2-1.0-0.90.9
Pavlov. Cond. index score0.10.10.2-0.4-0.2-0.20.2
Pavlov. Cond. latency score0.20.20.3-0.5-0.3-0.50.5
Pavlov. Cond. lever contacts0.10.10.1-0.3-0.1-0.30.3
Pavlov. Cond. magazine entry number0.00.00.10.30.00.0-0.0
Pavlov. Cond. intertrial magazine entries0.40.50.70.40.60.9-0.9
Pavlov. Cond. lever-magazine prob. diff.0.00.10.1-0.3-0.2-0.20.2
Pavlov. Cond. response bias0.10.10.2-0.4-0.2-0.20.2
Pavlov. Cond. lever latency0.00.00.00.10.10.2-0.2
Pavlov. Cond. magazine entry latency0.40.40.80.3-0.1-0.90.9
Pavlov. Cond. change in total contacts0.50.60.9-0.5-0.6-1.01.0
Pavlov. Cond. index score0.20.20.4-0.0-0.1-0.70.7
Pavlov. Cond. latency score0.10.20.3-0.0-0.1-0.60.6
Pavlov. Cond. lever contacts0.10.10.10.30.30.3-0.3
Pavlov. Cond. magazine entry number0.40.51.0-0.40.11.0-1.0
Pavlov. Cond. intertrial magazine entries0.10.20.5-0.7-0.40.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.20.20.40.1-0.1-0.60.6
Pavlov. Cond. response bias0.00.10.10.20.0-0.30.3
Time in closed arm before self-admin0.40.40.7-0.8-0.6-0.50.5
Time in closed arm after self-admin0.20.20.30.60.40.5-0.5
Time in open arm before self-admin0.40.40.70.90.70.5-0.5
Time in open arm after self-admin0.10.10.10.30.20.3-0.3
Bone: periosteal estimation0.10.30.5-0.7-0.6-0.40.4
Bone: periosteal perimeter0.50.91.0-1.0-1.0-0.90.9
Bone: post-yield work9.613.114.7-3.2-3.6-3.83.8
Progressive ratio test 1 active lever presses0.30.30.8-0.7-0.9-0.10.1
Progressive ratio test 1 breakpoint0.20.20.5-0.5-0.70.0-0.0
Progressive ratio test 1 inactive lever presses0.30.30.7-0.5-0.8-0.40.4
Progressive ratio test 2 active lever presses1.11.22.1-1.4-1.5-0.60.6
Progressive ratio test 2 breakpoint0.60.71.4-1.2-1.2-0.20.2
Progressive ratio test 2 inactive lever presses4.14.87.4-2.7-2.7-1.51.5
Incentive Sensitization - Responses0.20.20.4-0.5-0.7-0.30.3
Incentive Sensitization - Breakpoint0.30.30.5-0.7-0.7-0.30.3
Sum of active levers in priming session hrs 5-63.83.74.21.81.82.0-2.0
Progressive ratio1.92.23.6-0.7-1.1-1.91.9
Food seeking constrained by brief footshock0.00.00.10.40.2-0.10.1
Seeking ratio, punishment vs. effort1.21.52.30.61.01.5-1.5
Retroperitoneal fat weight1.54.810.0-3.2-2.5-1.21.2
Reaction time number correct1.01.51.61.31.31.1-1.1
Reaction time mean minus median0.10.20.30.6-0.1-0.40.4
Reaction time mean minus median AUC0.30.41.11.10.60.3-0.3
Reaction time num false alarms0.91.31.51.11.01.2-1.2
Reaction time num false alarms AUC1.11.52.11.41.21.1-1.1
Reaction time trials correct on left1.01.51.61.31.31.1-1.1
Reaction time trials on left1.31.82.01.41.41.3-1.3
Reaction time mean0.40.60.8-0.6-0.9-0.80.8
Reaction time mean AUC0.60.81.1-0.7-1.0-0.90.9
Median of all reaction times0.81.11.4-0.9-1.2-1.01.0
Reaction time omissions0.50.71.51.20.80.6-0.6
Reaction time false alarm rate0.30.40.50.70.60.7-0.7
Reaction time premature initiation rate0.91.22.61.61.20.6-0.6
Reaction time premature initiations2.63.76.32.52.11.4-1.4
Std. dev. reaction times0.10.10.20.2-0.4-0.40.4
Reaction time trials completed1.31.82.01.41.41.3-1.3
Reaction time trials AUC0.91.31.41.21.21.1-1.1
Run reversals in cocaine runway, females0.80.81.4-0.3-0.7-1.21.2
Run reversals in cocaine runway, males1.41.31.31.11.11.2-1.2
Latency to leave start box in cocaine runway1.51.61.8-1.2-1.2-1.31.3
Latency to leave start box in cocaine runway, F0.91.01.1-1.0-0.8-1.11.1
Latency to leave start box in cocaine runway, M0.10.10.1-0.2-0.2-0.20.2
Std. dev. time between licks in bursts2.12.52.51.61.61.6-1.6
Total sessions with >9 infusions0.70.71.0-0.9-1.0-0.70.7
Short access day 1 total inactive lever presses1.11.22.1-1.3-1.4-0.70.7
Short access day 10 total inactive lever presses0.60.61.0-1.0-1.0-0.60.6
Short access day 1 total infusions2.72.93.8-1.9-2.0-1.51.5
Short access day 10 total infusions4.85.35.8-2.1-2.4-2.42.4
Short access total infusions2.12.43.1-1.4-1.8-1.51.5
Short access day 1 locomotion2.32.53.0-1.7-1.7-1.41.4
Short access day 10 total locomotion1.41.51.7-1.3-1.3-1.21.2
Short access total locomotion1.31.31.7-1.0-1.3-1.11.1
One hour access (0.3 mA shock)2.83.35.8-2.4-2.3-1.11.1
Compulsive drug intake3.33.45.72.41.91.5-1.5
One hour access (shock baseline)3.23.77.1-2.7-2.3-1.11.1
Social response proportion0.20.20.3-0.0-0.4-0.60.6
Social responses0.40.50.60.80.70.6-0.6
Social time0.10.10.30.60.50.1-0.1
Soleus weight0.30.92.3-1.5-0.70.6-0.6
Bone: stiffness1.21.82.9-0.7-1.0-1.71.7
Tibialis anterior weight7.023.934.85.95.43.9-3.9
Time to tail flick, vehicle, before self-admin1.71.82.6-0.9-1.0-1.61.6
Time to tail flick, vehicle, after self-admin0.20.20.60.80.5-0.10.1
Time to tail flick, test, before self-admin2.42.32.6-1.4-1.5-1.61.6
Time to tail flick, test, after self-admin0.10.10.20.10.40.2-0.2
Delta time to tail flick, vehicle, before/after SA0.40.40.70.80.70.5-0.5
Delta time to tail flick, test, before/after SA5.04.55.02.12.22.1-2.1
Tibia length0.92.72.91.51.61.7-1.7
Ambulatory time before self-admin0.20.20.3-0.4-0.2-0.50.5
Ambulatory time after self-admin1.71.82.3-1.5-1.3-1.31.3
Bone: tissue strength0.30.30.4-0.6-0.5-0.60.6
Total heroin consumption1.21.42.91.71.30.6-0.6
Bone: trabecular number1.93.04.1-1.3-1.5-2.02.0
Bone: trabecular spacing0.60.81.00.60.81.0-1.0
Bone: trabecular thickness2.63.13.4-1.7-1.8-1.71.7
Bone: trabecular tissue density0.30.51.0-1.0-0.40.6-0.6
Water consumed over 24 hours0.10.10.20.20.1-0.40.4
Number of responses in last shaping day0.10.10.2-0.2-0.40.1-0.1