Acy3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XM_063286782.1 0.04 0.03 1.7e-03 0.02 0.01 0.01 0.01 3.2e-03 3.7e-02 5.8e-02 1.2e-02
2 Adipose gene expression Acy3 0.1 0.08 6.0e-04 0.02 0.02 0.03 0.02 1.3e-03 5.4e-03 4.1e-04 4.2e-03
3 Liver gene expression Acy3 0.76 0.12 0.0e+00 0.53 0.59 0.59 0.58 6.2e-70 1.3e-80 9.8e-82 8.0e-80

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.62.70.61.41.6
Area under the delay curve0.40.50.80.10.90.9
BMI with tail0.82.64.72.21.31.2
BMI without tail0.51.64.82.20.20.0
Body weight1.25.413.03.6-1.4-1.0
Weight adjusted by age0.71.11.51.2-1.0-0.9
Bone surface0.91.74.02.00.50.9
Bone volume0.61.11.60.90.91.3
Breakpoint value in progressive ratio session1.21.42.91.7-0.9-0.7
Number of licking bursts0.00.00.00.0-0.20.2
Context. condit. distance diff. score0.91.11.7-1.30.70.9
Locomotion velocity, session 10.00.00.0-0.0-0.10.1
Locomotion distance, session 10.40.50.80.70.60.9
Locomotion velocity, session 21.51.73.41.8-0.9-0.9
Locomotion distance, session 20.30.51.41.2-0.00.1
Locomotion velocity, session 30.81.01.60.11.21.3
Locomotion distance, session 30.10.10.1-0.10.30.4
Stereotopy head waving bouts, day 31.31.52.4-0.51.51.4
Stereotopy head waving duration, day 31.31.62.0-1.01.41.3
Locomotion velocity, session 70.60.71.0-0.01.01.0
Locomotion distance, session 70.10.10.30.60.10.1
Stereotopy head waving bouts, day 71.41.52.3-0.51.51.4
Stereotopy head waving duration, day 70.50.60.80.50.80.9
Locomotion velocity, session 80.91.11.71.3-1.0-0.6
Locomotion distance, session 80.30.50.7-0.60.60.8
Degree of sensitization distance0.10.10.30.50.30.2
Degree of sensitization stereotypy0.20.20.40.20.50.6
Conditioned locomotion3.94.45.81.7-2.4-2.2
Cocaine response after cond. corrected0.20.20.4-0.30.60.4
Cocaine response after cond. not corrected0.40.50.9-0.30.90.7
Cocaine response before conditioning0.00.00.00.10.10.2
Saline control response1.82.44.32.1-1.4-1.0
Bone: connectivity density1.01.53.21.80.71.0
Bone: cortical apparent density0.50.70.80.7-0.9-0.9
Bone: cortical area0.91.41.81.0-1.3-1.2
Bone: cortical porosity0.00.00.00.10.00.1
Bone: cortical porosity0.20.20.30.6-0.4-0.3
Bone: cortical thickness5.99.811.22.9-3.3-3.2
Bone: cortical thickness2.22.63.01.7-1.6-1.5
Bone: cortical tissue density0.70.91.00.9-1.0-1.0
Condit. Reinf. active minus inactive responses0.20.20.20.20.50.5
Condit. Reinf. active-inactive response ratio0.20.20.3-0.20.60.6
Condit. Reinf. active responses0.00.10.1-0.00.30.2
Condit. Reinf. inactive responses0.00.00.1-0.30.1-0.0
Incentive salience index mean0.10.10.10.30.30.3
Condit. Reinf. lever presses0.10.10.10.2-0.4-0.2
Condit. Reinf. active minus inactive responses1.51.92.9-0.81.71.5
Condit. Reinf. active-inactive response ratio2.22.63.1-1.51.81.5
Condit. Reinf. active responses1.11.52.4-0.11.61.4
Condit. Reinf. inactive responses0.30.41.21.10.20.3
Condit. Reinf. lever presses0.30.40.60.80.50.6
Condit. Reinf. lever reinforcers received0.91.32.10.11.41.3
Conditioned reinforcement - actives0.20.30.4-0.6-0.4-0.5
Conditioned reinforcement - inactives2.33.44.3-2.11.91.4
Conditioned locomotion4.55.912.8-3.61.81.3
Patch foraging indifference point 0 sec0.30.50.6-0.80.70.6
Patch foraging indifference point AUC1.21.72.01.2-1.4-1.3
Delay disc. indifference point, 0s delay1.21.32.0-0.01.31.4
Delay disc. indifference point, 16s delay0.90.91.2-1.11.00.8
Delay disc. indifference point, 2s delay0.80.91.1-0.71.11.0
Delay disc. indifference point, 24s delay0.30.30.50.4-0.7-0.6
Delay disc. indifference point, 4s delay0.20.20.30.20.60.5
Delay disc. indifference point, 8s delay0.20.20.20.40.40.5
Indifference point function ln k2.23.87.2-2.71.71.2
Indifference point function log k2.23.87.2-2.71.71.2
Patch foraging total patch changes 0 sec0.00.10.2-0.50.1-0.0
Patch foraging total patch changes 12 sec1.72.23.81.9-1.3-1.1
Patch foraging total patch changes 18 sec0.10.20.30.6-0.3-0.1
Patch foraging total patch changes 24 sec0.71.21.41.1-1.2-1.0
Patch foraging total patch changes 6 sec0.30.41.31.1-0.10.1
Patch foraging time to switch 0 sec0.40.91.71.30.31.0
Patch foraging water rate 0 sec1.02.26.1-2.5-0.0-0.7
Patch foraging water rate 12 sec1.63.410.0-3.20.2-0.4
Patch foraging water rate 18 sec0.50.82.3-1.50.40.1
Patch foraging water rate 24 sec0.81.12.7-1.6-0.3-0.8
Patch foraging water rate 6 sec0.81.22.2-1.5-0.7-0.9
Seeking ratio, delayed vs. immediate footshock0.50.71.30.21.10.8
Distance traveled before self-admin0.10.10.20.10.30.5
Distance traveled after self-admin0.00.00.00.1-0.20.1
Extensor digitorum longus weight5.321.032.55.7-4.1-3.7
Bone: elastic displacement1.51.72.8-0.0-1.5-1.7
Bone: elastic work2.83.64.51.7-2.1-1.9
Bone: endosteal estimation1.94.14.6-1.82.12.1
Bone: endosteal perimeter4.28.910.0-2.73.23.1
Epididymis fat weight2.48.315.6-4.02.41.8
Delta time in closed arm before/after self-admin1.51.41.61.2-1.3-1.1
Delta time in open arm before/after self-admin0.30.30.6-0.00.80.6
Diff in mean of infusions in LGA sessions0.70.91.20.9-1.1-0.8
Delay discount exponential model param0.30.30.5-0.2-0.7-0.7
Extinction: sum of active levers before priming0.80.92.31.5-0.4-0.1
Active lever presses in extinction session 61.11.11.41.2-0.8-1.1
Bone: final force0.61.02.31.5-0.7-0.4
Bone: final moment0.61.02.21.5-0.8-0.5
Food consumed during 24 hour testing period0.10.20.4-0.6-0.3-0.2
Glucose3.55.56.8-1.82.62.6
Heart weight1.32.13.0-0.61.71.7
Delay discount hyperbolic model param0.40.40.7-0.1-0.8-0.8
Intermittent access intake day 1-15 change1.12.25.6-2.40.70.8
Intermittent access intake escalation0.91.84.9-2.20.50.6
Intermittent access intake escalation 21.41.63.7-1.90.60.8
Intermitt. access day 1 inactive lever presses0.00.10.2-0.00.40.1
Intermitt. access day 15 inactive lever presses1.32.63.9-1.22.01.5
Intermitt. access escalation Index0.91.33.7-1.90.30.1
Intermittent access day 1 total infusions3.96.211.0-1.13.32.5
Intermittent access day 15 total infusions4.66.87.9-2.82.82.2
Intermittent access terminal intake (last 3 days)5.47.19.6-2.43.12.4
Intermittent access total infusions4.25.07.5-1.72.72.1
Intermittent access day 1 locomotion2.53.25.8-1.02.41.7
Intermittent access day 15 total locomotion3.56.47.9-2.82.62.2
Intermittent access total locomotion7.99.511.4-3.13.42.7
Intermittent access standard deviation0.51.01.4-1.20.80.9
Left kidney weight0.62.95.2-2.31.31.3
Right kidney weight0.31.33.4-1.80.50.5
Cocaine induced anxiety0.10.10.1-0.20.40.4
Post-drug Anxiety0.20.20.50.7-0.1-0.1
Baseline Anxiety0.40.50.70.8-0.6-0.6
Tail length1.14.35.41.8-2.3-2.1
Length with tail2.39.912.03.2-3.5-2.8
Length without tail2.06.47.52.7-2.7-2.1
Times rat made contact with spout0.20.20.50.70.00.3
Lifetime Intake2.73.35.3-1.32.31.7
Liver weight, left0.20.30.6-0.8-0.4-0.4
Liver weight, right0.40.72.1-1.50.10.1
Locomotor activity0.30.51.4-1.2-0.0-0.0
Locomotor testing distance0.30.51.5-1.20.1-0.1
Locomotor testing rearing0.61.31.5-1.21.11.0
Locomotion in novel chamber5.06.48.3-2.92.62.0
Locomotion in novel chamber post-restriction2.33.75.9-2.41.81.4
Fecal boli incidents, locomotor time 10.00.10.1-0.30.40.1
Change in fecal boli incidents, locomotor task0.00.00.10.3-0.20.1
Time >=10cm from walls, locomotor time 13.73.95.7-1.32.42.1
Bouts of movement, locomotor time 11.92.24.10.9-2.0-1.3
Total resting periods, locomotor time 11.21.42.70.5-1.6-1.1
Rest time, locomotor task time 10.60.72.1-1.4-0.10.1
Distance moved, locomotor task time 10.50.71.40.31.20.9
Vertical activity count, locomotor time 10.61.52.4-0.91.51.2
Time >=10cm from walls, locomotor time 20.00.10.1-0.40.0-0.1
Bouts of movement, locomotor time 20.30.40.60.8-0.6-0.6
Total resting periods, locomotor time 20.10.10.20.4-0.3-0.2
Rest time, locomotor task time 21.92.42.4-1.51.51.6
Distance moved, locomotor task time 21.21.41.61.1-1.3-1.3
Vertical activity count, locomotor time 21.21.62.50.3-1.5-1.6
Light reinforcement 10.10.41.0-1.00.20.1
Light reinforcement 20.91.43.7-1.90.60.4
Bone: marrow area2.04.34.8-1.82.22.2
Bone: maximum diameter0.00.10.2-0.5-0.10.0
Bone: maximum force0.50.92.21.50.30.6
Bone: maximum moment0.50.82.21.50.20.5
Mean time between licks in bursts0.20.50.80.9-0.6-0.6
Mean num. licks in bursts0.10.10.20.10.50.3
Cd content in liver1.41.52.5-1.61.11.0
Co content in liver0.60.71.2-0.5-0.9-1.1
Cu content in liver0.00.00.0-0.00.2-0.0
Fe content in liver0.20.20.40.6-0.3-0.3
K content in liver0.20.20.50.70.10.2
Mg content in liver0.60.60.7-0.60.90.8
Mn content in liver1.31.42.91.7-0.9-0.8
Na content in liver0.40.50.80.0-0.9-0.8
Rb content in liver1.72.02.3-1.21.51.5
Se content in liver0.50.60.9-0.41.00.9
Sr content in liver2.52.22.31.4-1.5-1.5
Zn content in liver0.60.60.70.7-0.8-0.9
Bone: minimum diameter1.93.54.7-1.32.02.2
Time in familiar zone, hab. session 10.70.70.8-0.90.80.9
Time in novel zone, hab. session 10.10.10.10.4-0.3-0.4
Total zone transitions, hab. session 10.20.30.70.8-0.4-0.2
Total locomotion distance, hab. session 10.40.50.6-0.70.80.7
Locomotion velocity, hab. session 10.10.10.1-0.30.30.3
Time in familiar zone, hab. session 21.01.11.90.5-1.4-1.0
Time in novel zone, hab. session 20.90.91.6-0.11.31.1
Total zone transitions, hab. session 21.21.51.81.11.21.3
Total locomotion distance, hab. session 20.81.01.60.01.31.2
Locomotion velocity, hab. session 21.01.32.0-0.31.41.4
Novel to familiar place preference ratio0.20.20.20.40.50.5
Novelty place preference0.30.30.40.10.70.7
Time in novel zone, NPP test0.30.30.40.10.70.7
Total zone transitions, NPP test0.30.41.11.1-0.00.4
Total locomotion distance, NPP test0.20.30.5-0.10.60.7
Locomotion velocity, NPP test0.10.20.3-0.10.40.5
Intraocular pressure0.30.40.4-0.6-0.5-0.6
Delta distance traveled before/after self-admin0.20.20.30.1-0.6-0.4
Delta ambulatory time before/after self-admin0.20.20.30.3-0.6-0.5
Parametrial fat weight2.66.18.8-3.02.22.2
Pavlov. Cond. lever latency0.10.20.3-0.50.50.1
Pavlov. Cond. magazine entry latency0.50.71.2-0.40.81.1
Pavlov. Cond. change in total contacts0.70.70.9-0.80.81.0
Pavlov. Cond. index score0.10.10.1-0.4-0.10.3
Pavlov. Cond. latency score0.10.10.1-0.2-0.00.4
Pavlov. Cond. lever contacts0.00.00.10.1-0.30.1
Pavlov. Cond. magazine entry number0.10.10.20.50.1-0.2
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.3-0.4-0.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.1-0.3-0.10.3
Pavlov. Cond. response bias0.10.10.1-0.4-0.30.1
Pavlov. Cond. lever latency0.00.10.1-0.00.40.1
Pavlov. Cond. magazine entry latency1.01.23.71.9-0.20.1
Pavlov. Cond. change in total contacts0.20.30.40.30.60.7
Pavlov. Cond. index score0.20.30.80.90.00.2
Pavlov. Cond. latency score0.10.20.50.7-0.00.2
Pavlov. Cond. lever contacts0.00.00.10.1-0.3-0.1
Pavlov. Cond. magazine entry number1.31.64.7-2.20.3-0.0
Pavlov. Cond. intertrial magazine entries0.50.71.8-1.40.40.3
Pavlov. Cond. lever-magazine prob. diff.0.30.41.21.1-0.10.2
Pavlov. Cond. response bias0.20.30.90.9-0.10.2
Time in closed arm before self-admin1.51.93.1-1.01.81.2
Time in closed arm after self-admin0.00.00.0-0.20.1-0.1
Time in open arm before self-admin1.71.93.30.9-1.8-1.2
Time in open arm after self-admin0.30.40.80.9-0.5-0.3
Bone: periosteal estimation0.10.20.3-0.50.40.5
Bone: periosteal perimeter0.40.71.1-0.50.91.0
Bone: post-yield work5.27.611.7-0.63.33.4
Progressive ratio test 1 active lever presses0.00.10.2-0.00.40.0
Progressive ratio test 1 breakpoint0.00.00.10.00.4-0.0
Progressive ratio test 1 inactive lever presses0.10.20.40.00.70.1
Progressive ratio test 2 active lever presses1.82.22.7-1.51.71.2
Progressive ratio test 2 breakpoint1.71.92.4-1.41.61.1
Progressive ratio test 2 inactive lever presses5.08.29.8-3.13.12.3
Incentive Sensitization - Responses0.40.60.9-0.21.00.9
Incentive Sensitization - Breakpoint0.60.81.1-0.41.11.0
Sum of active levers in priming session hrs 5-62.32.13.3-0.0-1.8-1.7
Progressive ratio1.11.72.41.01.41.5
Food seeking constrained by brief footshock0.10.10.20.40.40.1
Seeking ratio, punishment vs. effort0.50.81.1-0.9-0.6-1.0
Retroperitoneal fat weight5.222.140.4-6.43.83.4
Reaction time number correct0.61.11.80.5-1.4-1.1
Reaction time mean minus median0.41.13.01.7-0.5-0.1
Reaction time mean minus median AUC0.51.42.71.6-1.0-0.7
Reaction time num false alarms0.60.91.50.2-1.2-1.0
Reaction time num false alarms AUC1.01.52.20.9-1.5-1.2
Reaction time trials correct on left0.61.11.80.5-1.4-1.1
Reaction time trials on left0.71.32.20.6-1.5-1.2
Reaction time mean0.20.30.6-0.00.50.8
Reaction time mean AUC0.30.40.8-0.10.60.9
Median of all reaction times0.50.71.2-0.50.91.1
Reaction time omissions1.31.93.61.9-1.2-0.8
Reaction time false alarm rate0.20.30.50.4-0.7-0.6
Reaction time premature initiation rate1.92.65.22.3-1.1-1.1
Reaction time premature initiations2.85.07.02.6-2.1-1.9
Std. dev. reaction times0.20.30.90.9-0.10.2
Reaction time trials completed0.71.32.20.6-1.5-1.2
Reaction time trials AUC0.51.01.80.5-1.3-1.0
Run reversals in cocaine runway, females0.40.40.80.90.20.5
Run reversals in cocaine runway, males0.70.71.10.3-1.0-0.9
Latency to leave start box in cocaine runway1.01.11.6-0.41.31.2
Latency to leave start box in cocaine runway, F0.70.81.3-0.31.11.0
Latency to leave start box in cocaine runway, M0.00.00.00.10.10.2
Std. dev. time between licks in bursts1.62.13.20.9-1.8-1.6
Total sessions with >9 infusions0.20.30.60.30.80.4
Short access day 1 total inactive lever presses1.31.72.2-1.51.40.9
Short access day 10 total inactive lever presses0.00.10.10.10.40.1
Short access day 1 total infusions1.31.73.0-1.01.71.1
Short access day 10 total infusions2.12.75.60.02.41.6
Short access total infusions0.91.12.3-0.01.51.0
Short access day 1 locomotion1.21.52.6-1.01.61.0
Short access day 10 total locomotion1.01.93.2-0.91.81.3
Short access total locomotion1.62.03.3-1.01.81.2
One hour access (0.3 mA shock)4.24.85.7-2.42.31.8
Compulsive drug intake3.13.74.01.9-2.0-1.9
One hour access (shock baseline)4.87.39.5-3.12.82.2
Social response proportion0.10.10.30.6-0.10.3
Social responses0.50.61.00.7-1.0-0.7
Social time0.40.50.80.9-0.7-0.4
Soleus weight1.74.913.2-3.61.00.7
Bone: stiffness0.50.81.11.00.60.9
Tibialis anterior weight8.829.833.15.8-5.5-5.1
Time to tail flick, vehicle, before self-admin0.50.50.70.40.80.8
Time to tail flick, vehicle, after self-admin0.60.82.11.40.50.5
Time to tail flick, test, before self-admin2.32.33.2-0.81.81.8
Time to tail flick, test, after self-admin0.10.10.3-0.1-0.5-0.3
Delta time to tail flick, vehicle, before/after SA0.30.30.91.0-0.1-0.1
Delta time to tail flick, test, before/after SA4.34.46.70.9-2.6-2.4
Tibia length0.61.72.40.6-1.5-1.6
Ambulatory time before self-admin0.20.20.50.00.40.7
Ambulatory time after self-admin1.01.21.6-0.91.11.2
Bone: tissue strength0.30.30.4-0.40.50.6
Total heroin consumption2.73.15.22.3-1.7-1.2
Bone: trabecular number0.81.42.20.71.21.5
Bone: trabecular spacing0.20.30.3-0.5-0.4-0.6
Bone: trabecular thickness1.21.52.4-0.51.41.5
Bone: trabecular tissue density2.33.59.9-3.10.50.4
Water consumed over 24 hours0.30.41.21.1-0.2-0.0
Number of responses in last shaping day0.10.10.10.3-0.2-0.3