Actl6a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Actl6a 0.05 0.03 1.0e-05 0.02 0.05 0.03 0.03 5.8e-03 3.7e-05 6.7e-04 5.3e-04
2 NAcc mRNA stability Actl6a 0.04 0.03 6.4e-05 0.03 0.04 0.03 0.03 1.6e-04 4.7e-05 1.1e-04 1.4e-04
3 PL mRNA stability Actl6a 0.02 0.01 9.0e-03 0.01 0.01 0.01 0.01 2.7e-02 2.3e-02 1.2e-02 6.5e-02
4 LHb mRNA stability Actl6a 0.16 0.13 6.2e-03 0.11 0.12 0.1 0.12 1.2e-03 8.5e-04 2.5e-03 7.3e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.74.56.02.22.2-2.41.5
Area under the delay curve1.41.41.61.31.1-1.21.2
BMI with tail0.92.93.41.61.8-1.51.8
BMI without tail1.53.13.31.81.8-1.61.8
Body weight0.00.10.30.10.40.00.5
Weight adjusted by age2.12.33.0-1.5-1.51.3-1.7
Bone surface0.10.10.30.10.3-0.5-0.3
Bone volume0.10.20.50.20.3-0.7-0.4
Breakpoint value in progressive ratio session4.24.65.62.12.4-1.82.3
Number of licking bursts2.12.52.91.71.7-1.21.6
Context. condit. distance diff. score2.63.14.71.91.7-2.21.1
Locomotion velocity, session 10.80.82.1-1.0-0.41.4-0.1
Locomotion distance, session 10.20.30.7-0.30.10.80.5
Locomotion velocity, session 21.21.43.8-1.2-0.62.0-0.2
Locomotion distance, session 20.50.71.6-0.9-0.51.3-0.1
Locomotion velocity, session 30.00.00.0-0.10.10.20.0
Locomotion distance, session 30.10.10.3-0.3-0.20.6-0.1
Stereotopy head waving bouts, day 30.00.00.0-0.2-0.10.2-0.2
Stereotopy head waving duration, day 30.70.91.00.91.0-0.90.9
Locomotion velocity, session 70.80.91.1-1.0-0.61.0-1.0
Locomotion distance, session 70.81.01.1-1.1-1.01.0-1.1
Stereotopy head waving bouts, day 72.32.63.61.61.7-1.11.9
Stereotopy head waving duration, day 72.22.73.61.61.8-1.11.9
Locomotion velocity, session 82.53.03.71.81.9-1.41.8
Locomotion distance, session 80.40.60.90.70.8-0.90.5
Degree of sensitization distance1.71.72.5-1.3-1.30.9-1.6
Degree of sensitization stereotypy2.83.14.21.81.8-1.32.0
Conditioned locomotion0.20.20.5-0.2-0.5-0.2-0.7
Cocaine response after cond. corrected0.20.20.5-0.3-0.70.1-0.5
Cocaine response after cond. not corrected0.70.81.2-0.8-1.10.7-0.9
Cocaine response before conditioning0.00.00.1-0.30.10.2-0.2
Saline control response0.91.21.7-1.2-0.90.9-1.3
Bone: connectivity density1.93.03.51.71.9-1.81.5
Bone: cortical apparent density0.00.00.00.10.1-0.2-0.1
Bone: cortical area0.30.51.4-0.5-0.4-0.2-1.2
Bone: cortical porosity0.00.00.00.10.1-0.2-0.0
Bone: cortical porosity0.00.00.1-0.00.1-0.2-0.2
Bone: cortical thickness0.10.20.6-0.1-0.2-0.5-0.8
Bone: cortical thickness0.10.10.2-0.10.10.40.4
Bone: cortical tissue density0.00.00.00.10.1-0.2-0.1
Condit. Reinf. active minus inactive responses1.61.82.2-1.5-1.21.5-1.2
Condit. Reinf. active-inactive response ratio1.92.12.2-1.5-1.51.4-1.4
Condit. Reinf. active responses0.60.71.2-1.0-0.41.1-0.6
Condit. Reinf. inactive responses0.40.51.30.31.1-0.30.7
Incentive salience index mean1.72.02.6-1.6-1.31.6-1.1
Condit. Reinf. lever presses0.40.50.9-1.0-0.50.8-0.3
Condit. Reinf. active minus inactive responses1.41.72.0-1.4-1.11.4-1.3
Condit. Reinf. active-inactive response ratio1.61.72.0-1.3-1.41.2-1.3
Condit. Reinf. active responses2.53.44.5-2.1-1.52.1-1.6
Condit. Reinf. inactive responses0.91.12.1-1.2-0.61.5-0.6
Condit. Reinf. lever presses0.30.40.4-0.7-0.50.7-0.7
Condit. Reinf. lever reinforcers received2.33.24.2-2.0-1.42.0-1.6
Conditioned reinforcement - actives0.30.30.4-0.6-0.60.6-0.4
Conditioned reinforcement - inactives0.00.00.1-0.1-0.10.10.4
Conditioned locomotion0.20.20.5-0.40.10.70.4
Patch foraging indifference point 0 sec1.32.22.61.61.6-1.21.4
Patch foraging indifference point AUC2.42.84.61.61.8-0.92.1
Delay disc. indifference point, 0s delay0.20.30.4-0.6-0.40.5-0.5
Delay disc. indifference point, 16s delay1.51.51.81.31.2-1.41.0
Delay disc. indifference point, 2s delay0.60.60.90.80.7-0.90.7
Delay disc. indifference point, 24s delay1.11.11.51.20.9-1.20.7
Delay disc. indifference point, 4s delay0.50.50.80.60.7-0.50.9
Delay disc. indifference point, 8s delay0.30.30.50.60.4-0.50.7
Indifference point function ln k2.23.04.7-1.6-1.91.1-2.2
Indifference point function log k2.23.04.7-1.6-1.91.1-2.2
Patch foraging total patch changes 0 sec1.42.32.81.71.6-1.31.5
Patch foraging total patch changes 12 sec2.22.83.41.81.8-1.31.8
Patch foraging total patch changes 18 sec2.12.63.61.71.7-1.11.9
Patch foraging total patch changes 24 sec6.68.19.42.83.1-2.62.9
Patch foraging total patch changes 6 sec5.88.69.73.13.1-2.53.0
Patch foraging time to switch 0 sec0.20.30.5-0.4-0.60.2-0.7
Patch foraging water rate 0 sec0.50.81.00.90.9-0.81.0
Patch foraging water rate 12 sec0.00.00.1-0.1-0.1-0.1-0.4
Patch foraging water rate 18 sec0.00.00.1-0.3-0.10.30.1
Patch foraging water rate 24 sec1.82.43.31.51.8-1.41.5
Patch foraging water rate 6 sec0.00.10.10.20.3-0.20.3
Seeking ratio, delayed vs. immediate footshock0.40.41.10.60.6-1.00.1
Distance traveled before self-admin1.92.12.21.51.4-1.41.4
Distance traveled after self-admin0.80.91.51.01.1-0.41.2
Extensor digitorum longus weight0.20.91.80.61.2-0.31.3
Bone: elastic displacement0.20.20.5-0.2-0.5-0.1-0.7
Bone: elastic work1.72.24.3-1.4-1.40.7-2.1
Bone: endosteal estimation0.51.11.7-1.2-0.70.9-1.3
Bone: endosteal perimeter0.51.01.3-1.1-0.81.1-1.0
Epididymis fat weight0.61.41.8-1.3-1.11.3-0.9
Delta time in closed arm before/after self-admin0.10.10.30.10.3-0.6-0.2
Delta time in open arm before/after self-admin0.20.20.5-0.3-0.60.70.0
Diff in mean of infusions in LGA sessions0.20.20.50.30.4-0.70.1
Delay discount exponential model param1.61.71.9-1.4-1.21.3-1.3
Extinction: sum of active levers before priming0.30.30.6-0.5-0.40.6-0.7
Active lever presses in extinction session 60.10.10.10.30.4-0.30.1
Bone: final force0.50.81.8-1.1-0.50.5-1.3
Bone: final moment0.40.71.7-0.9-0.40.2-1.3
Food consumed during 24 hour testing period0.00.00.1-0.2-0.30.1-0.2
Glucose1.82.73.3-1.6-1.81.6-1.6
Heart weight0.30.50.70.60.8-0.70.5
Delay discount hyperbolic model param1.21.21.3-1.1-1.01.2-1.1
Intermittent access intake day 1-15 change1.21.21.91.11.2-0.61.4
Intermittent access intake escalation1.00.91.71.01.0-0.51.3
Intermittent access intake escalation 20.10.10.2-0.10.10.40.2
Intermitt. access day 1 inactive lever presses0.10.10.1-0.4-0.3-0.0-0.2
Intermitt. access day 15 inactive lever presses0.20.20.4-0.4-0.50.70.4
Intermitt. access escalation Index0.10.10.1-0.2-0.3-0.1-0.3
Intermittent access day 1 total infusions3.03.54.4-2.0-1.92.1-1.4
Intermittent access day 15 total infusions0.20.20.4-0.2-0.00.70.6
Intermittent access terminal intake (last 3 days)1.01.12.5-1.1-0.81.6-0.2
Intermittent access total infusions0.90.92.0-1.1-0.81.4-0.1
Intermittent access day 1 locomotion0.60.60.9-0.9-0.60.9-0.5
Intermittent access day 15 total locomotion2.02.13.31.21.7-0.91.8
Intermittent access total locomotion0.40.51.20.20.80.31.1
Intermittent access standard deviation0.20.20.30.50.4-0.30.5
Left kidney weight0.10.20.50.30.3-0.70.2
Right kidney weight0.41.11.41.01.2-0.91.1
Cocaine induced anxiety0.10.20.4-0.4-0.20.6-0.1
Post-drug Anxiety0.70.71.4-0.9-0.81.2-0.3
Baseline Anxiety0.30.30.40.60.4-0.60.6
Tail length0.00.00.1-0.0-0.30.1-0.3
Length with tail0.31.11.3-1.0-1.20.9-1.0
Length without tail1.53.23.9-2.0-1.81.4-1.9
Times rat made contact with spout1.11.21.5-1.1-1.21.2-0.9
Lifetime Intake1.41.62.8-1.4-1.21.7-0.5
Liver weight, left0.81.22.5-1.1-1.01.6-0.2
Liver weight, right0.00.10.1-0.3-0.30.2-0.1
Locomotor activity3.14.95.9-2.4-2.11.8-2.4
Locomotor testing distance1.11.92.5-1.6-1.11.3-1.5
Locomotor testing rearing0.30.40.9-0.7-0.40.3-1.0
Locomotion in novel chamber0.10.10.4-0.10.10.60.3
Locomotion in novel chamber post-restriction0.10.10.30.20.1-0.5-0.1
Fecal boli incidents, locomotor time 11.51.72.0-1.2-1.41.3-1.2
Change in fecal boli incidents, locomotor task0.80.71.00.81.0-0.80.8
Time >=10cm from walls, locomotor time 10.10.10.2-0.3-0.40.1-0.4
Bouts of movement, locomotor time 10.30.40.7-0.6-0.60.1-0.9
Total resting periods, locomotor time 10.40.40.7-0.6-0.80.2-0.9
Rest time, locomotor task time 11.01.11.1-1.0-1.11.0-1.0
Distance moved, locomotor task time 11.61.82.71.21.4-1.01.7
Vertical activity count, locomotor time 11.41.52.31.21.1-1.01.5
Time >=10cm from walls, locomotor time 20.40.40.5-0.5-0.70.6-0.6
Bouts of movement, locomotor time 20.10.10.20.2-0.2-0.4-0.2
Total resting periods, locomotor time 20.10.10.10.0-0.3-0.2-0.3
Rest time, locomotor task time 20.00.00.10.10.0-0.1-0.4
Distance moved, locomotor task time 20.20.20.7-0.00.30.00.8
Vertical activity count, locomotor time 20.30.30.7-0.5-0.30.90.3
Light reinforcement 10.71.32.0-1.2-1.20.6-1.4
Light reinforcement 20.00.00.1-0.3-0.20.20.1
Bone: marrow area0.40.81.2-1.1-0.50.8-1.1
Bone: maximum diameter0.10.10.5-0.3-0.10.0-0.7
Bone: maximum force0.91.52.9-1.3-1.00.7-1.7
Bone: maximum moment0.81.43.1-1.2-0.90.6-1.8
Mean time between licks in bursts1.62.23.0-1.5-1.71.1-1.5
Mean num. licks in bursts2.63.14.0-1.8-2.01.5-1.6
Cd content in liver0.91.01.5-1.1-0.91.2-0.4
Co content in liver0.20.30.8-0.4-0.30.90.3
Cu content in liver0.40.50.7-0.7-0.90.6-0.6
Fe content in liver0.50.60.8-0.7-0.90.6-0.9
K content in liver0.40.41.00.70.5-1.0-0.1
Mg content in liver0.20.20.60.0-0.3-0.5-0.8
Mn content in liver0.30.30.9-0.0-0.3-0.4-1.0
Na content in liver1.61.72.21.41.5-1.11.3
Rb content in liver0.20.30.70.50.4-0.8-0.1
Se content in liver0.60.71.0-0.9-0.81.0-0.7
Sr content in liver0.80.71.50.70.9-0.21.2
Zn content in liver0.10.10.3-0.1-0.5-0.1-0.5
Bone: minimum diameter1.52.85.0-1.8-1.50.9-2.2
Time in familiar zone, hab. session 10.10.10.2-0.1-0.10.30.4
Time in novel zone, hab. session 11.71.72.31.41.4-1.50.7
Total zone transitions, hab. session 10.60.91.30.81.1-0.61.1
Total locomotion distance, hab. session 12.43.44.71.82.2-1.81.6
Locomotion velocity, hab. session 12.12.94.01.72.0-1.71.5
Time in familiar zone, hab. session 20.10.10.1-0.3-0.40.1-0.3
Time in novel zone, hab. session 21.11.11.41.11.2-1.10.7
Total zone transitions, hab. session 20.10.10.20.00.30.30.4
Total locomotion distance, hab. session 20.20.30.40.40.7-0.30.6
Locomotion velocity, hab. session 20.10.10.20.20.5-0.00.5
Novel to familiar place preference ratio7.27.49.72.92.6-3.12.3
Novelty place preference9.19.311.83.22.9-3.42.5
Time in novel zone, NPP test9.810.113.03.43.0-3.62.7
Total zone transitions, NPP test0.60.82.1-1.0-0.51.5-0.1
Total locomotion distance, NPP test0.20.20.6-0.5-0.10.80.1
Locomotion velocity, NPP test0.30.51.1-0.8-0.41.0-0.2
Intraocular pressure0.91.21.5-1.2-1.10.9-1.0
Delta distance traveled before/after self-admin0.50.51.0-0.8-0.71.0-0.3
Delta ambulatory time before/after self-admin0.20.20.4-0.5-0.40.7-0.1
Parametrial fat weight0.00.00.1-0.30.10.20.1
Pavlov. Cond. lever latency1.01.32.21.21.1-1.50.5
Pavlov. Cond. magazine entry latency0.10.10.30.10.2-0.20.6
Pavlov. Cond. change in total contacts0.20.20.5-0.4-0.40.70.4
Pavlov. Cond. index score0.20.30.6-0.4-0.10.70.8
Pavlov. Cond. latency score0.40.61.1-0.8-0.61.10.2
Pavlov. Cond. lever contacts1.01.22.0-1.3-1.01.4-0.4
Pavlov. Cond. magazine entry number0.81.02.8-0.6-0.80.4-1.7
Pavlov. Cond. intertrial magazine entries0.40.50.7-0.5-0.70.6-0.8
Pavlov. Cond. lever-magazine prob. diff.0.20.20.7-0.2-0.00.40.8
Pavlov. Cond. response bias0.50.61.80.40.6-0.21.3
Pavlov. Cond. lever latency0.20.30.5-0.5-0.70.2-0.7
Pavlov. Cond. magazine entry latency0.10.20.40.40.1-0.00.7
Pavlov. Cond. change in total contacts0.30.51.1-0.7-0.51.1-0.2
Pavlov. Cond. index score0.20.30.60.40.5-0.00.8
Pavlov. Cond. latency score0.20.20.60.30.40.10.8
Pavlov. Cond. lever contacts0.50.70.90.91.0-0.70.9
Pavlov. Cond. magazine entry number0.60.71.4-0.8-0.80.4-1.2
Pavlov. Cond. intertrial magazine entries0.10.20.4-0.6-0.10.3-0.6
Pavlov. Cond. lever-magazine prob. diff.0.20.20.60.30.40.10.8
Pavlov. Cond. response bias0.40.50.60.80.8-0.50.8
Time in closed arm before self-admin0.10.20.20.50.3-0.30.4
Time in closed arm after self-admin0.00.00.1-0.0-0.0-0.3-0.3
Time in open arm before self-admin0.80.91.30.81.0-1.10.8
Time in open arm after self-admin0.00.00.10.20.1-0.20.3
Bone: periosteal estimation0.51.12.4-1.2-0.70.5-1.5
Bone: periosteal perimeter0.50.81.6-0.9-0.70.4-1.3
Bone: post-yield work1.21.72.8-1.3-1.31.7-0.8
Progressive ratio test 1 active lever presses1.11.21.8-1.2-0.91.4-0.7
Progressive ratio test 1 breakpoint1.21.32.0-1.3-0.91.4-0.8
Progressive ratio test 1 inactive lever presses0.40.50.8-0.8-0.60.9-0.3
Progressive ratio test 2 active lever presses0.30.30.8-0.4-0.10.90.5
Progressive ratio test 2 breakpoint0.20.30.7-0.10.20.60.8
Progressive ratio test 2 inactive lever presses0.20.20.5-0.4-0.30.70.5
Incentive Sensitization - Responses0.60.61.60.50.7-0.11.2
Incentive Sensitization - Breakpoint0.50.51.50.40.60.11.2
Sum of active levers in priming session hrs 5-61.91.82.7-1.4-1.21.6-1.0
Progressive ratio0.20.20.3-0.5-0.40.3-0.5
Food seeking constrained by brief footshock0.10.20.60.10.1-0.8-0.2
Seeking ratio, punishment vs. effort0.60.71.00.90.7-1.00.8
Retroperitoneal fat weight0.20.71.2-1.1-0.60.9-0.8
Reaction time number correct1.52.23.9-1.7-1.32.0-0.7
Reaction time mean minus median0.10.10.2-0.1-0.50.30.1
Reaction time mean minus median AUC0.20.20.50.50.2-0.20.7
Reaction time num false alarms0.00.00.10.10.20.00.2
Reaction time num false alarms AUC0.00.00.10.10.20.20.2
Reaction time trials correct on left1.52.23.9-1.7-1.32.0-0.7
Reaction time trials on left1.72.44.1-1.7-1.42.0-0.8
Reaction time mean1.72.43.0-1.4-1.71.5-1.5
Reaction time mean AUC1.41.92.5-1.3-1.61.3-1.3
Median of all reaction times1.52.12.5-1.3-1.61.4-1.4
Reaction time omissions1.21.72.6-1.1-1.60.7-1.5
Reaction time false alarm rate0.60.81.01.01.0-0.90.7
Reaction time premature initiation rate0.50.71.01.00.7-0.90.6
Reaction time premature initiations0.00.00.1-0.1-0.20.30.2
Std. dev. reaction times0.20.20.5-0.3-0.70.6-0.3
Reaction time trials completed1.72.44.1-1.7-1.42.0-0.8
Reaction time trials AUC1.72.44.0-1.7-1.42.0-0.9
Run reversals in cocaine runway, females0.50.50.90.70.8-0.40.9
Run reversals in cocaine runway, males0.20.20.4-0.5-0.20.6-0.2
Latency to leave start box in cocaine runway0.20.20.3-0.3-0.50.3-0.5
Latency to leave start box in cocaine runway, F0.20.30.4-0.4-0.60.4-0.6
Latency to leave start box in cocaine runway, M0.00.00.00.0-0.1-0.1-0.1
Std. dev. time between licks in bursts0.60.71.0-0.9-1.00.7-0.8
Total sessions with >9 infusions2.02.32.6-1.6-1.61.2-1.6
Short access day 1 total inactive lever presses1.82.03.01.11.6-1.21.7
Short access day 10 total inactive lever presses1.71.92.21.41.3-1.51.3
Short access day 1 total infusions0.50.50.7-0.8-0.60.8-0.5
Short access day 10 total infusions1.21.31.9-1.3-1.11.4-0.8
Short access total infusions1.82.02.5-1.6-1.41.5-1.0
Short access day 1 locomotion0.80.91.20.81.1-0.71.1
Short access day 10 total locomotion0.70.81.00.81.0-0.70.9
Short access total locomotion0.10.20.3-0.6-0.30.4-0.1
One hour access (0.3 mA shock)0.40.41.2-0.5-0.41.10.2
Compulsive drug intake0.40.40.6-0.6-0.50.7-0.8
One hour access (shock baseline)0.50.61.4-0.7-0.71.20.1
Social response proportion3.03.33.7-1.8-1.91.8-1.7
Social responses0.10.20.30.40.5-0.20.4
Social time4.45.87.7-2.4-2.81.9-2.5
Soleus weight8.424.532.65.15.0-5.73.9
Bone: stiffness0.30.51.1-0.7-0.60.4-1.0
Tibialis anterior weight0.51.73.01.01.7-0.91.5
Time to tail flick, vehicle, before self-admin1.81.82.4-1.2-1.51.1-1.5
Time to tail flick, vehicle, after self-admin1.61.72.3-1.2-1.51.5-1.0
Time to tail flick, test, before self-admin1.21.11.91.20.8-1.40.7
Time to tail flick, test, after self-admin2.72.84.01.81.5-2.01.2
Delta time to tail flick, vehicle, before/after SA0.60.60.9-0.7-0.90.9-0.5
Delta time to tail flick, test, before/after SA1.71.51.71.31.2-1.21.2
Tibia length4.011.312.6-3.5-3.43.3-3.3
Ambulatory time before self-admin1.11.11.21.11.1-1.11.0
Ambulatory time after self-admin0.40.40.60.60.8-0.30.8
Bone: tissue strength2.12.04.9-1.2-1.30.2-2.2
Total heroin consumption6.17.17.72.62.8-2.72.6
Bone: trabecular number7.211.312.43.43.5-3.33.2
Bone: trabecular spacing5.47.07.7-2.6-2.82.5-2.7
Bone: trabecular thickness0.20.30.50.60.4-0.70.2
Bone: trabecular tissue density0.91.22.2-1.0-1.50.9-0.9
Water consumed over 24 hours0.00.10.2-0.1-0.00.0-0.4
Number of responses in last shaping day1.11.21.81.01.1-0.71.4