Acer3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Acer3 0.69 0.1 0.0e+00 0.38 0.51 0.52 0.52 3.8e-44 8.2e-66 1.5e-66 1.2e-66
2 Adipose mRNA stability Acer3 0.78 0.05 0.0e+00 0.24 0.4 0.39 0.38 5.5e-26 8.9e-47 2.3e-46 5.0e-45
3 Liver gene expression Acer3 0.42 0.13 1.1e-08 0.05 0.06 0.05 0.05 3.2e-06 1.5e-07 1.1e-06 3.5e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.6-0.1-0.5
Area under the delay curve0.10.10.1-0.3-0.3-0.4
BMI with tail0.20.71.01.00.6-0.8
BMI without tail1.12.35.41.02.3-0.6
Body weight0.31.12.20.71.5-0.7
Weight adjusted by age0.40.50.8-0.20.9-0.8
Bone surface0.40.81.3-1.1-1.0-0.3
Bone volume0.10.30.5-0.5-0.1-0.7
Breakpoint value in progressive ratio session0.20.20.40.4-0.0-0.7
Number of licking bursts3.44.07.02.61.4-1.8
Context. condit. distance diff. score1.61.94.2-1.3-2.0-0.1
Locomotion velocity, session 10.10.10.1-0.30.40.2
Locomotion distance, session 10.91.21.3-1.1-1.01.1
Locomotion velocity, session 20.60.61.2-0.91.10.1
Locomotion distance, session 20.50.71.2-0.90.21.1
Locomotion velocity, session 30.20.20.5-0.7-0.10.3
Locomotion distance, session 30.60.60.9-0.9-1.00.1
Stereotopy head waving bouts, day 30.70.91.50.41.21.0
Stereotopy head waving duration, day 30.70.81.8-0.8-0.21.3
Locomotion velocity, session 70.70.71.60.70.3-1.3
Locomotion distance, session 70.81.02.90.40.1-1.7
Stereotopy head waving bouts, day 72.22.54.3-1.6-0.82.1
Stereotopy head waving duration, day 72.32.74.0-2.0-0.71.9
Locomotion velocity, session 81.41.62.3-1.5-1.5-0.7
Locomotion distance, session 81.11.62.8-1.7-1.20.7
Degree of sensitization distance0.80.81.10.70.8-1.1
Degree of sensitization stereotypy4.14.56.0-2.4-1.72.1
Conditioned locomotion0.00.00.0-0.1-0.10.2
Cocaine response after cond. corrected1.61.83.51.20.7-1.9
Cocaine response after cond. not corrected0.30.30.70.4-0.2-0.8
Cocaine response before conditioning2.63.25.5-1.4-1.52.4
Saline control response1.31.73.1-1.8-0.31.3
Bone: connectivity density0.20.30.7-0.2-0.9-0.1
Bone: cortical apparent density0.91.21.51.11.2-1.0
Bone: cortical area0.30.40.6-0.1-0.8-0.8
Bone: cortical porosity2.32.53.8-1.6-1.11.9
Bone: cortical porosity1.92.13.8-1.4-0.62.0
Bone: cortical thickness0.30.60.80.9-0.3-0.9
Bone: cortical thickness0.50.61.3-0.3-1.2-0.7
Bone: cortical tissue density0.91.21.71.01.3-0.9
Condit. Reinf. active minus inactive responses0.20.30.40.40.4-0.7
Condit. Reinf. active-inactive response ratio0.00.00.10.0-0.1-0.3
Condit. Reinf. active responses0.30.40.70.60.8-0.5
Condit. Reinf. inactive responses0.30.30.80.40.9-0.2
Incentive salience index mean0.40.50.90.30.8-1.0
Condit. Reinf. lever presses0.40.50.9-0.00.9-0.8
Condit. Reinf. active minus inactive responses3.03.76.4-2.5-1.81.1
Condit. Reinf. active-inactive response ratio0.40.40.6-0.8-0.7-0.4
Condit. Reinf. active responses4.15.710.8-3.3-2.01.6
Condit. Reinf. inactive responses3.54.37.5-2.7-0.82.2
Condit. Reinf. lever presses14.419.631.3-5.6-4.13.3
Condit. Reinf. lever reinforcers received4.96.912.6-3.5-2.21.8
Conditioned reinforcement - actives2.12.13.1-1.8-1.51.0
Conditioned reinforcement - inactives0.10.10.10.30.4-0.3
Conditioned locomotion1.92.33.2-1.8-1.61.1
Patch foraging indifference point 0 sec4.37.09.9-3.1-2.32.4
Patch foraging indifference point AUC0.10.10.30.0-0.2-0.5
Delay disc. indifference point, 0s delay0.40.40.8-0.9-0.20.6
Delay disc. indifference point, 16s delay0.00.00.1-0.1-0.2-0.2
Delay disc. indifference point, 2s delay1.01.21.9-1.4-0.90.9
Delay disc. indifference point, 24s delay1.11.02.01.00.3-1.4
Delay disc. indifference point, 4s delay0.30.30.8-0.90.3-0.2
Delay disc. indifference point, 8s delay0.30.30.6-0.5-0.8-0.2
Indifference point function ln k2.02.73.2-1.6-1.51.8
Indifference point function log k2.02.73.2-1.6-1.51.8
Patch foraging total patch changes 0 sec3.75.98.3-2.9-2.22.1
Patch foraging total patch changes 12 sec0.30.30.8-0.9-0.40.2
Patch foraging total patch changes 18 sec0.60.72.0-1.4-0.30.3
Patch foraging total patch changes 24 sec0.20.20.7-0.80.10.2
Patch foraging total patch changes 6 sec1.72.54.3-1.2-2.11.3
Patch foraging time to switch 0 sec2.64.07.52.71.8-1.1
Patch foraging water rate 0 sec2.54.06.7-2.6-1.81.4
Patch foraging water rate 12 sec1.92.95.1-2.3-1.31.4
Patch foraging water rate 18 sec0.30.41.2-1.1-0.20.1
Patch foraging water rate 24 sec0.81.11.9-1.4-1.00.6
Patch foraging water rate 6 sec0.71.11.3-1.1-1.10.8
Seeking ratio, delayed vs. immediate footshock2.02.43.31.61.1-1.8
Distance traveled before self-admin0.30.30.50.70.4-0.5
Distance traveled after self-admin0.30.30.70.80.20.4
Extensor digitorum longus weight0.52.04.11.10.9-2.0
Bone: elastic displacement1.21.32.21.50.1-1.3
Bone: elastic work1.11.42.31.5-0.1-1.4
Bone: endosteal estimation0.20.41.1-1.00.2-0.3
Bone: endosteal perimeter0.51.13.1-1.8-0.30.1
Epididymis fat weight1.53.44.11.72.0-1.8
Delta time in closed arm before/after self-admin2.32.23.71.01.4-1.9
Delta time in open arm before/after self-admin1.31.32.4-1.5-0.90.8
Diff in mean of infusions in LGA sessions2.73.04.92.21.4-1.4
Delay discount exponential model param0.10.10.10.30.30.3
Extinction: sum of active levers before priming0.30.30.50.20.7-0.7
Active lever presses in extinction session 65.55.37.7-2.3-1.72.8
Bone: final force0.50.82.10.0-1.4-0.5
Bone: final moment0.40.61.8-0.2-1.3-0.4
Food consumed during 24 hour testing period3.33.96.5-2.5-0.32.3
Glucose0.10.10.3-0.5-0.1-0.3
Heart weight0.60.91.3-1.1-1.10.3
Delay discount hyperbolic model param0.10.20.30.60.30.2
Intermittent access intake day 1-15 change2.42.33.0-1.7-1.61.3
Intermittent access intake escalation2.92.83.9-2.0-1.61.4
Intermittent access intake escalation 20.60.60.9-0.9-0.60.8
Intermitt. access day 1 inactive lever presses0.40.50.70.80.8-0.3
Intermitt. access day 15 inactive lever presses0.00.00.00.10.10.0
Intermitt. access escalation Index0.10.10.10.0-0.20.4
Intermittent access day 1 total infusions0.20.30.6-0.8-0.2-0.3
Intermittent access day 15 total infusions1.92.13.7-1.9-1.40.8
Intermittent access terminal intake (last 3 days)0.91.01.9-1.4-1.00.4
Intermittent access total infusions0.30.30.8-0.9-0.4-0.1
Intermittent access day 1 locomotion0.00.00.1-0.1-0.3-0.1
Intermittent access day 15 total locomotion1.31.42.5-1.6-0.91.0
Intermittent access total locomotion0.30.30.8-0.9-0.40.3
Intermittent access standard deviation0.00.00.1-0.30.1-0.0
Left kidney weight0.30.81.5-0.91.20.3
Right kidney weight0.30.71.3-0.81.20.5
Cocaine induced anxiety1.61.83.31.81.2-0.9
Post-drug Anxiety0.40.40.60.80.6-0.5
Baseline Anxiety1.71.83.5-1.9-1.10.8
Tail length0.61.74.3-0.92.10.2
Length with tail0.31.13.2-0.31.80.1
Length without tail0.00.10.10.3-0.3-0.0
Times rat made contact with spout1.01.12.90.61.7-0.2
Lifetime Intake0.50.51.2-1.1-0.60.1
Liver weight, left0.40.60.70.70.9-0.7
Liver weight, right1.62.73.91.92.0-0.8
Locomotor activity1.52.34.7-1.50.52.2
Locomotor testing distance1.22.03.5-1.90.11.6
Locomotor testing rearing0.40.50.8-0.70.90.6
Locomotion in novel chamber1.31.61.9-1.4-1.31.1
Locomotion in novel chamber post-restriction4.25.17.0-2.6-2.31.8
Fecal boli incidents, locomotor time 10.70.81.2-1.1-1.00.2
Change in fecal boli incidents, locomotor task0.40.40.80.90.60.1
Time >=10cm from walls, locomotor time 12.22.22.5-1.6-1.51.3
Bouts of movement, locomotor time 10.10.10.3-0.5-0.3-0.0
Total resting periods, locomotor time 10.10.10.2-0.4-0.4-0.1
Rest time, locomotor task time 10.00.00.0-0.2-0.1-0.1
Distance moved, locomotor task time 10.10.20.30.00.4-0.5
Vertical activity count, locomotor time 10.00.00.1-0.2-0.3-0.2
Time >=10cm from walls, locomotor time 20.60.71.5-1.2-0.50.6
Bouts of movement, locomotor time 20.60.61.1-1.0-0.00.9
Total resting periods, locomotor time 20.30.40.6-0.80.00.7
Rest time, locomotor task time 21.01.12.51.60.5-0.7
Distance moved, locomotor task time 20.81.02.7-1.6-0.30.5
Vertical activity count, locomotor time 20.20.20.6-0.8-0.1-0.3
Light reinforcement 11.01.84.12.00.8-0.7
Light reinforcement 20.50.71.5-0.1-0.81.2
Bone: marrow area0.20.30.8-0.90.2-0.4
Bone: maximum diameter0.81.42.3-1.5-1.40.1
Bone: maximum force0.50.92.5-0.2-1.6-0.5
Bone: maximum moment0.50.82.1-0.4-1.4-0.3
Mean time between licks in bursts1.82.55.8-2.40.31.3
Mean num. licks in bursts2.32.75.5-2.3-0.81.4
Cd content in liver1.61.82.21.51.0-1.5
Co content in liver0.60.81.2-0.51.1-0.9
Cu content in liver0.40.50.9-0.80.90.1
Fe content in liver0.30.41.10.2-0.1-1.1
K content in liver0.40.41.00.41.00.2
Mg content in liver0.20.20.2-0.50.00.5
Mn content in liver0.30.30.90.90.0-0.0
Na content in liver1.81.93.7-1.1-0.91.9
Rb content in liver0.20.20.7-0.80.0-0.2
Se content in liver2.12.54.82.21.4-0.9
Sr content in liver0.10.10.2-0.1-0.1-0.5
Zn content in liver3.33.76.1-2.5-1.41.7
Bone: minimum diameter0.40.71.20.20.8-1.1
Time in familiar zone, hab. session 10.20.20.30.40.4-0.5
Time in novel zone, hab. session 10.10.10.10.40.2-0.3
Total zone transitions, hab. session 11.21.72.4-0.6-1.51.5
Total locomotion distance, hab. session 11.01.42.31.51.30.2
Locomotion velocity, hab. session 10.60.81.41.20.90.5
Time in familiar zone, hab. session 20.20.20.5-0.70.2-0.1
Time in novel zone, hab. session 20.00.00.00.1-0.2-0.1
Total zone transitions, hab. session 23.24.15.7-1.4-2.42.2
Total locomotion distance, hab. session 20.30.40.80.90.40.6
Locomotion velocity, hab. session 20.40.50.90.90.60.6
Novel to familiar place preference ratio0.60.60.9-0.5-0.90.9
Novelty place preference0.30.30.4-0.4-0.50.6
Time in novel zone, NPP test0.40.40.4-0.6-0.70.6
Total zone transitions, NPP test0.60.91.9-0.6-1.40.6
Total locomotion distance, NPP test0.81.12.21.50.9-0.4
Locomotion velocity, NPP test1.01.53.01.71.1-0.4
Intraocular pressure0.71.01.5-0.8-1.2-1.0
Delta distance traveled before/after self-admin0.60.71.7-0.3-0.41.3
Delta ambulatory time before/after self-admin0.80.81.7-0.4-0.81.3
Parametrial fat weight0.20.41.11.10.2-0.3
Pavlov. Cond. lever latency0.40.51.41.2-0.3-0.1
Pavlov. Cond. magazine entry latency0.91.12.3-1.5-0.80.6
Pavlov. Cond. change in total contacts0.20.30.8-0.9-0.1-0.2
Pavlov. Cond. index score0.60.82.3-1.50.20.2
Pavlov. Cond. latency score0.60.82.3-1.5-0.00.3
Pavlov. Cond. lever contacts0.50.60.9-0.91.0-0.3
Pavlov. Cond. magazine entry number1.01.32.91.70.8-0.6
Pavlov. Cond. intertrial magazine entries1.41.72.91.41.7-0.6
Pavlov. Cond. lever-magazine prob. diff.0.50.61.8-1.30.30.1
Pavlov. Cond. response bias0.30.30.5-0.70.7-0.1
Pavlov. Cond. lever latency14.319.331.15.64.2-3.0
Pavlov. Cond. magazine entry latency5.15.99.8-2.6-3.11.1
Pavlov. Cond. change in total contacts10.514.521.6-4.7-3.82.8
Pavlov. Cond. index score11.414.722.5-4.7-4.02.4
Pavlov. Cond. latency score11.113.820.3-4.5-4.02.3
Pavlov. Cond. lever contacts15.320.932.9-5.7-4.43.3
Pavlov. Cond. magazine entry number5.36.510.13.23.0-0.5
Pavlov. Cond. intertrial magazine entries0.81.02.80.31.70.5
Pavlov. Cond. lever-magazine prob. diff.10.613.520.8-4.6-3.82.3
Pavlov. Cond. response bias14.720.031.9-5.6-4.43.0
Time in closed arm before self-admin2.02.23.1-1.3-1.41.7
Time in closed arm after self-admin0.10.10.30.2-0.2-0.5
Time in open arm before self-admin2.42.64.02.01.4-1.4
Time in open arm after self-admin0.00.00.1-0.00.3-0.1
Bone: periosteal estimation0.30.50.8-0.9-0.4-0.8
Bone: periosteal perimeter0.40.61.7-1.3-0.30.2
Bone: post-yield work0.50.60.9-0.7-1.00.7
Progressive ratio test 1 active lever presses0.10.10.10.40.0-0.2
Progressive ratio test 1 breakpoint0.10.10.20.40.0-0.1
Progressive ratio test 1 inactive lever presses0.00.00.0-0.1-0.00.0
Progressive ratio test 2 active lever presses0.50.61.6-1.3-0.3-0.1
Progressive ratio test 2 breakpoint0.40.51.3-1.2-0.3-0.0
Progressive ratio test 2 inactive lever presses0.20.20.7-0.8-0.1-0.1
Incentive Sensitization - Responses1.01.02.7-1.6-0.50.2
Incentive Sensitization - Breakpoint1.01.02.7-1.7-0.60.3
Sum of active levers in priming session hrs 5-60.10.10.2-0.10.40.5
Progressive ratio0.30.40.8-0.2-0.9-0.4
Food seeking constrained by brief footshock1.51.82.8-1.6-0.31.7
Seeking ratio, punishment vs. effort0.91.12.1-0.90.51.5
Retroperitoneal fat weight4.916.118.24.14.3-3.7
Reaction time number correct1.11.63.9-0.5-0.82.0
Reaction time mean minus median0.70.91.6-1.3-0.50.9
Reaction time mean minus median AUC1.62.02.5-1.6-1.11.5
Reaction time num false alarms2.73.75.42.31.2-2.1
Reaction time num false alarms AUC1.62.33.01.71.0-1.7
Reaction time trials correct on left1.11.63.9-0.5-0.82.0
Reaction time trials on left1.21.74.0-0.5-0.82.0
Reaction time mean0.00.10.10.30.1-0.3
Reaction time mean AUC0.10.20.30.50.2-0.5
Median of all reaction times0.20.30.50.70.2-0.6
Reaction time omissions0.10.10.30.2-0.2-0.5
Reaction time false alarm rate2.83.96.71.91.0-2.6
Reaction time premature initiation rate0.10.10.3-0.50.30.2
Reaction time premature initiations0.50.71.4-0.8-0.31.2
Std. dev. reaction times0.10.10.3-0.50.10.0
Reaction time trials completed1.21.74.0-0.5-0.82.0
Reaction time trials AUC1.11.63.8-0.5-0.82.0
Run reversals in cocaine runway, females3.43.35.01.21.9-2.2
Run reversals in cocaine runway, males0.30.30.6-0.3-0.5-0.8
Latency to leave start box in cocaine runway1.01.12.11.41.1-0.4
Latency to leave start box in cocaine runway, F1.21.32.01.41.2-0.8
Latency to leave start box in cocaine runway, M0.20.20.30.3-0.30.6
Std. dev. time between licks in bursts0.80.91.2-0.81.11.0
Total sessions with >9 infusions1.92.12.8-1.7-1.51.2
Short access day 1 total inactive lever presses0.20.20.4-0.00.6-0.5
Short access day 10 total inactive lever presses0.20.20.40.40.20.6
Short access day 1 total infusions1.61.73.2-1.8-0.91.0
Short access day 10 total infusions0.20.20.5-0.7-0.3-0.4
Short access total infusions0.20.20.6-0.7-0.40.1
Short access day 1 locomotion3.03.23.9-1.9-2.01.5
Short access day 10 total locomotion0.20.20.3-0.5-0.40.3
Short access total locomotion0.40.40.6-0.4-0.60.8
One hour access (0.3 mA shock)0.70.82.2-1.5-0.40.2
Compulsive drug intake0.10.10.1-0.1-0.10.4
One hour access (shock baseline)0.80.92.0-1.4-0.60.6
Social response proportion0.50.50.90.70.90.5
Social responses1.11.52.21.31.5-0.7
Social time1.21.53.61.90.9-0.3
Soleus weight0.72.13.21.01.8-1.5
Bone: stiffness0.40.71.60.3-1.3-0.5
Tibialis anterior weight0.00.00.0-0.0-0.10.2
Time to tail flick, vehicle, before self-admin0.60.71.01.00.4-0.9
Time to tail flick, vehicle, after self-admin1.51.62.3-1.5-1.40.8
Time to tail flick, test, before self-admin0.30.30.8-0.1-0.2-0.9
Time to tail flick, test, after self-admin0.30.30.4-0.40.5-0.6
Delta time to tail flick, vehicle, before/after SA3.43.44.6-2.2-1.81.5
Delta time to tail flick, test, before/after SA0.10.10.30.00.40.5
Tibia length1.44.04.9-2.0-2.21.7
Ambulatory time before self-admin0.30.30.50.70.2-0.7
Ambulatory time after self-admin0.20.20.30.6-0.10.5
Bone: tissue strength1.01.02.00.3-1.40.9
Total heroin consumption0.10.20.4-0.3-0.60.2
Bone: trabecular number0.91.42.51.60.1-1.3
Bone: trabecular spacing1.62.12.9-1.7-0.71.7
Bone: trabecular thickness0.91.11.90.90.8-1.4
Bone: trabecular tissue density0.50.71.01.01.0-0.1
Water consumed over 24 hours1.01.22.01.21.4-0.4
Number of responses in last shaping day0.30.30.60.40.8-0.5