Best TWAS P=5.502859e-34 · Best GWAS P=1.798592e-35 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Nhlrc2 | alternative polyA | ENSRNOT00000022788 | 0.03 | 0.00 | top1 | 1 | 0.00 | 1.8e-01 | 6.6 | 6.6 | 3.6e-11 | -0.41 | 0.06 | 0.03 | FALSE |
2 | Adipose | Nhlrc2 | alternative polyA | ENSRNOT00000105890 | 0.03 | 0.01 | top1 | 1 | 0.01 | 3.7e-02 | 6.7 | -6.7 | 2.8e-11 | 0.41 | 0.06 | 0.04 | FALSE |
3 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000105444 | 0.08 | 0.07 | top1 | 1 | 0.07 | 4.0e-08 | 6.0 | 6.0 | 2.0e-09 | -0.21 | 0.10 | 0.90 | FALSE |
4 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000115590 | 0.02 | 0.02 | lasso | 1 | 0.02 | 6.5e-03 | 6.5 | 6.5 | 6.9e-11 | -0.38 | 0.51 | 0.37 | FALSE |
5 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000118477 | 0.63 | 0.22 | top1 | 1 | 0.22 | 1.4e-23 | 6.5 | -6.5 | 6.9e-11 | 0.20 | 0.00 | 1.00 | FALSE |
6 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000105444 | 0.08 | 0.07 | top1 | 1 | 0.07 | 7.2e-08 | 6.0 | 6.0 | 2.0e-09 | -0.21 | 0.10 | 0.90 | FALSE |
7 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000115590 | 0.02 | 0.02 | lasso | 1 | 0.02 | 6.5e-03 | 6.5 | 6.5 | 6.9e-11 | -0.38 | 0.51 | 0.37 | FALSE |
8 | Adipose | Atrnl1 | alternative polyA | ENSRNOT00000118477 | 0.24 | 0.19 | lasso | 4 | 0.19 | 5.0e-21 | 6.5 | -6.5 | 7.0e-11 | 0.37 | 0.03 | 0.97 | FALSE |
9 | Adipose | Zdhhc6 | alternative polyA | ENSRNOT00000054681 | 0.08 | 0.06 | top1 | 1 | 0.06 | 1.1e-07 | 6.1 | 6.1 | 8.5e-10 | -0.39 | 0.56 | 0.43 | FALSE |
10 | Adipose | Zdhhc6 | alternative polyA | ENSRNOT00000103424 | 0.08 | 0.07 | top1 | 1 | 0.07 | 1.7e-08 | 6.1 | -6.1 | 8.5e-10 | 0.39 | 0.56 | 0.43 | FALSE |
11 | Adipose | Dennd10 | gene expression | ENSRNOG00000010230 | 0.03 | 0.03 | top1 | 1 | 0.03 | 2.5e-04 | -9.6 | -9.6 | 6.3e-22 | 0.69 | 0.24 | 0.02 | FALSE |
12 | Adipose | Prdx3 | gene expression | ENSRNOG00000010958 | 0.19 | 0.22 | lasso | 34 | 0.22 | 1.6e-23 | -8.3 | -8.5 | 1.5e-17 | 0.53 | 1.00 | 0.00 | TRUE |
13 | Adipose | Grk5 | gene expression | ENSRNOG00000011439 | 0.17 | 0.20 | lasso | 24 | 0.22 | 8.6e-24 | -10.1 | 10.7 | 1.5e-26 | -0.73 | 1.00 | 0.00 | FALSE |
14 | Adipose | Nrap | gene expression | ENSRNOG00000016714 | 0.05 | 0.03 | blup | 2070 | 0.05 | 2.5e-06 | 6.5 | 5.5 | 3.8e-08 | -0.29 | 0.87 | 0.12 | FALSE |
15 | Adipose | Ces2c | gene expression | ENSRNOG00000036571 | 0.11 | 0.03 | blup | 596 | 0.07 | 2.3e-08 | -3.9 | 6.3 | 3.3e-10 | -0.56 | 0.98 | 0.01 | FALSE |
16 | Adipose | AABR07007032.1 | gene expression | ENSRNOG00000046333 | 0.54 | 0.29 | enet | 19 | 0.31 | 3.7e-35 | 6.0 | -5.9 | 2.7e-09 | 0.26 | 0.52 | 0.48 | FALSE |
17 | Adipose | NA | gene expression | ENSRNOG00000065957 | 0.02 | 0.00 | blup | 2197 | 0.01 | 1.2e-02 | -6.9 | -7.0 | 2.7e-12 | 0.34 | 0.56 | 0.03 | FALSE |
18 | Adipose | Acsl5 | isoform ratio | ENSRNOT00000103067 | 0.03 | 0.02 | top1 | 1 | 0.02 | 9.2e-04 | 6.3 | -6.3 | 4.0e-10 | 0.39 | 0.07 | 0.05 | TRUE |
19 | Adipose | Nhlrc2 | isoform ratio | ENSRNOT00000022788 | 0.04 | 0.02 | top1 | 1 | 0.02 | 2.9e-03 | 6.7 | 6.7 | 2.1e-11 | -0.39 | 0.08 | 0.20 | FALSE |
20 | Adipose | Nhlrc2 | isoform ratio | ENSRNOT00000105890 | 0.04 | 0.02 | top1 | 1 | 0.02 | 4.0e-03 | 6.7 | -6.7 | 2.1e-11 | 0.40 | 0.07 | 0.15 | FALSE |
21 | Adipose | Atrnl1 | isoform ratio | ENSRNOT00000105444 | 0.08 | 0.07 | top1 | 1 | 0.07 | 4.2e-08 | 6.0 | 6.0 | 2.0e-09 | -0.21 | 0.10 | 0.90 | FALSE |
22 | Adipose | Atrnl1 | isoform ratio | ENSRNOT00000115590 | 0.02 | 0.02 | top1 | 1 | 0.02 | 4.6e-03 | 6.5 | 6.5 | 6.9e-11 | -0.19 | 0.04 | 0.54 | FALSE |
23 | Adipose | Atrnl1 | isoform ratio | ENSRNOT00000118477 | 0.73 | 0.22 | top1 | 1 | 0.22 | 1.2e-23 | 6.5 | -6.5 | 6.9e-11 | 0.20 | 0.00 | 1.00 | FALSE |
24 | Adipose | AABR07007068.1 | isoform ratio | ENSRNOT00000104357 | 0.13 | 0.09 | top1 | 1 | 0.09 | 8.3e-10 | 5.1 | 5.1 | 3.1e-07 | -0.03 | 0.18 | 0.82 | FALSE |
25 | Adipose | AABR07007032.1 | isoform ratio | ENSRNOT00000108182 | 0.32 | 0.12 | top1 | 1 | 0.12 | 4.9e-13 | 5.3 | -5.3 | 1.5e-07 | 0.25 | 0.96 | 0.04 | FALSE |
26 | Adipose | AABR07007032.1 | intron excision ratio | chr1:256098045:256100373 | 0.05 | 0.03 | blup | 2742 | 0.04 | 8.7e-05 | 5.9 | 5.6 | 2.4e-08 | -0.29 | 0.72 | 0.28 | FALSE |
27 | Adipose | AABR07007032.1 | intron excision ratio | chr1:256098051:256100373 | 0.23 | 0.08 | enet | 260 | 0.10 | 6.0e-11 | 6.2 | -6.1 | 1.1e-09 | 0.43 | 0.06 | 0.94 | FALSE |
28 | Adipose | AABR07007032.1 | intron excision ratio | chr1:256100420:256102022 | 0.10 | 0.04 | lasso | 22 | 0.05 | 1.4e-06 | 5.3 | 5.8 | 6.7e-09 | -0.35 | 0.43 | 0.57 | FALSE |
29 | Adipose | AABR07007032.1 | intron excision ratio | chr1:256230416:256255914 | 0.03 | 0.02 | top1 | 1 | 0.02 | 1.1e-03 | 6.0 | 6.0 | 2.0e-09 | -0.25 | 0.09 | 0.06 | FALSE |
30 | Adipose | AABR07007032.1 | intron excision ratio | chr1:256230416:256298551 | 0.03 | 0.02 | top1 | 1 | 0.02 | 8.8e-04 | 6.0 | -6.0 | 2.0e-09 | 0.25 | 0.09 | 0.06 | FALSE |
31 | Adipose | Pdzd8 | mRNA stability | ENSRNOG00000009460 | 0.04 | 0.00 | blup | 1998 | 0.01 | 7.6e-02 | -10.6 | 7.0 | 2.7e-12 | -0.50 | 0.42 | 0.06 | FALSE |
32 | Adipose | Cacul1 | mRNA stability | ENSRNOG00000009954 | 0.09 | 0.03 | enet | 62 | 0.04 | 5.6e-05 | -3.2 | 7.5 | 5.4e-14 | -0.74 | 0.96 | 0.03 | FALSE |
33 | Adipose | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.03 | 0.01 | enet | 3 | 0.03 | 6.3e-04 | 5.7 | 5.7 | 1.3e-08 | -0.28 | 0.61 | 0.33 | FALSE |
34 | Adipose | Atrnl1 | mRNA stability | ENSRNOG00000017406 | 0.11 | 0.02 | enet | 83 | 0.06 | 1.0e-06 | 6.0 | 5.7 | 1.1e-08 | -0.37 | 0.48 | 0.51 | FALSE |
35 | BLA | Rab11fip2 | gene expression | ENSRNOG00000009523 | 0.11 | 0.05 | top1 | 1 | 0.05 | 1.1e-03 | -9.4 | -9.4 | 6.0e-21 | 0.71 | 0.12 | 0.04 | FALSE |
36 | BLA | Cacul1 | gene expression | ENSRNOG00000009954 | 0.23 | 0.16 | top1 | 1 | 0.16 | 9.5e-09 | -5.4 | 5.4 | 5.5e-08 | -0.43 | 0.94 | 0.00 | FALSE |
37 | BLA | Ces2c | gene expression | ENSRNOG00000036571 | 0.26 | 0.19 | lasso | 16 | 0.20 | 1.1e-10 | -9.9 | 9.9 | 6.7e-23 | -0.71 | 0.94 | 0.06 | FALSE |
38 | BLA | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.07 | 0.02 | top1 | 1 | 0.02 | 2.1e-02 | -11.9 | 11.9 | 1.2e-32 | -0.83 | 0.06 | 0.04 | FALSE |
39 | BLA | NA | gene expression | ENSRNOG00000065260 | 0.36 | 0.23 | top1 | 1 | 0.23 | 1.9e-12 | -5.4 | -5.4 | 5.5e-08 | 0.22 | 1.00 | 0.00 | FALSE |
40 | BLA | Cacul1 | isoform ratio | ENSRNOT00000084760 | 0.07 | 0.00 | top1 | 1 | 0.00 | 2.4e-01 | -10.1 | -10.1 | 6.4e-24 | 0.69 | 0.07 | 0.04 | FALSE |
41 | BLA | AABR07007068.1 | isoform ratio | ENSRNOT00000104357 | 0.17 | 0.04 | top1 | 1 | 0.04 | 3.5e-03 | 5.2 | 5.2 | 2.3e-07 | -0.10 | 0.08 | 0.10 | FALSE |
42 | BLA | AABR07007068.1 | isoform ratio | ENSRNOT00000119102 | 0.20 | 0.04 | top1 | 1 | 0.04 | 3.4e-03 | 5.2 | -5.2 | 2.3e-07 | 0.09 | 0.08 | 0.10 | FALSE |
43 | BLA | Nhlrc2 | mRNA stability | ENSRNOG00000016948 | 0.05 | 0.02 | blup | 2147 | 0.03 | 1.1e-02 | 4.2 | -5.1 | 3.2e-07 | 0.25 | 0.49 | 0.14 | FALSE |
44 | Brain | Rab11fip2 | gene expression | ENSRNOG00000009523 | 0.09 | 0.05 | lasso | 2 | 0.06 | 3.6e-06 | -9.4 | -9.6 | 6.8e-22 | -0.46 | 0.96 | 0.04 | TRUE |
45 | Brain | Prlhr | gene expression | ENSRNOG00000009922 | 0.03 | 0.01 | blup | 1906 | 0.01 | 1.4e-02 | -3.9 | 7.8 | 7.1e-15 | -0.77 | 0.46 | 0.22 | FALSE |
46 | Brain | Cacul1 | gene expression | ENSRNOG00000009954 | 0.16 | 0.15 | blup | 1783 | 0.15 | 4.8e-14 | -5.6 | 6.8 | 1.1e-11 | -0.69 | 1.00 | 0.00 | FALSE |
47 | Brain | Afap1l2 | gene expression | ENSRNOG00000017164 | 0.21 | 0.14 | lasso | 21 | 0.22 | 2.2e-20 | 6.5 | -6.0 | 1.6e-09 | 0.39 | 0.08 | 0.92 | FALSE |
48 | Brain | Fhip2a | gene expression | ENSRNOG00000017225 | 0.05 | 0.06 | lasso | 3 | 0.06 | 2.5e-06 | 5.3 | -5.3 | 9.5e-08 | 0.32 | 0.74 | 0.26 | FALSE |
49 | Brain | Nanos1 | gene expression | ENSRNOG00000025060 | 0.03 | 0.01 | enet | 58 | 0.01 | 2.2e-02 | -9.6 | -10.9 | 9.0e-28 | 0.86 | 0.55 | 0.29 | FALSE |
50 | Brain | Ces2c | gene expression | ENSRNOG00000036571 | 0.20 | 0.28 | blup | 597 | 0.29 | 3.4e-27 | -9.6 | 9.8 | 1.2e-22 | -0.70 | 1.00 | 0.00 | FALSE |
51 | Brain | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.09 | 0.08 | lasso | 36 | 0.09 | 2.2e-08 | -4.2 | 6.9 | 3.9e-12 | -0.57 | 1.00 | 0.00 | FALSE |
52 | Brain | Casp7 | gene expression | ENSRNOG00000056216 | 0.13 | 0.12 | blup | 2102 | 0.17 | 1.9e-15 | 5.0 | 5.6 | 1.8e-08 | -0.31 | 0.97 | 0.03 | FALSE |
53 | Brain | NA | gene expression | ENSRNOG00000065260 | 0.37 | 0.39 | top1 | 1 | 0.39 | 3.9e-38 | -5.5 | -5.5 | 3.2e-08 | 0.53 | 1.00 | 0.00 | TRUE |
54 | Brain | NA | gene expression | ENSRNOG00000071003 | 0.11 | 0.04 | enet | 5 | 0.06 | 4.5e-06 | 7.2 | -6.3 | 2.2e-10 | -0.02 | 0.98 | 0.01 | FALSE |
55 | Brain | Cacul1 | isoform ratio | ENSRNOT00000050617 | 0.14 | 0.11 | top1 | 1 | 0.11 | 3.3e-10 | -12.1 | 12.1 | 1.5e-33 | -0.95 | 0.68 | 0.32 | FALSE |
56 | Brain | Cacul1 | isoform ratio | ENSRNOT00000084760 | 0.12 | 0.10 | enet | 5 | 0.11 | 5.6e-10 | -12.1 | -9.7 | 4.6e-22 | -0.47 | 0.11 | 0.89 | FALSE |
57 | Brain | Zfp950 | isoform ratio | ENSRNOT00000047883 | 0.04 | 0.03 | blup | 954 | 0.05 | 9.3e-06 | -10.2 | 9.3 | 1.3e-20 | -0.62 | 0.98 | 0.02 | FALSE |
58 | Brain | Cacul1 | intron excision ratio | chr1:259677583:259686255 | 0.12 | 0.08 | enet | 36 | 0.10 | 1.6e-09 | -11.7 | 10.5 | 7.2e-26 | -0.25 | 0.14 | 0.86 | FALSE |
59 | Brain | Gpam | intron excision ratio | chr1:254140727:254142324 | 0.03 | 0.01 | blup | 2121 | 0.02 | 2.8e-03 | 3.4 | 5.2 | 2.0e-07 | -0.27 | 0.62 | 0.28 | FALSE |
60 | Brain | NA | intron excision ratio | chr1:258565051:258626309 | 0.03 | 0.05 | top1 | 1 | 0.05 | 1.1e-05 | 6.3 | -6.3 | 3.2e-10 | 0.42 | 0.18 | 0.03 | FALSE |
61 | Brain | Cacul1 | mRNA stability | ENSRNOG00000009954 | 0.03 | 0.01 | top1 | 1 | 0.01 | 2.3e-02 | -5.4 | 5.4 | 6.7e-08 | -0.66 | 0.07 | 0.03 | FALSE |
62 | Brain | Nrap | mRNA stability | ENSRNOG00000016714 | 0.04 | 0.04 | top1 | 1 | 0.04 | 1.5e-04 | 5.1 | -5.1 | 3.1e-07 | 0.41 | 0.14 | 0.03 | FALSE |
63 | Brain | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.56 | 0.41 | blup | 2422 | 0.44 | 2.6e-44 | 5.4 | -5.6 | 2.6e-08 | 0.37 | 0.84 | 0.16 | FALSE |
64 | Brain | Atrnl1 | mRNA stability | ENSRNOG00000017406 | 0.24 | 0.25 | blup | 2591 | 0.27 | 1.4e-24 | 5.2 | -5.2 | 2.3e-07 | 0.25 | 0.94 | 0.06 | FALSE |
65 | Brain | Casp7 | mRNA stability | ENSRNOG00000056216 | 0.12 | 0.04 | blup | 2102 | 0.04 | 5.0e-05 | 6.3 | 5.1 | 3.2e-07 | -0.38 | 0.65 | 0.33 | FALSE |
66 | Eye | Tectb | gene expression | ENSRNOG00000015671 | 0.33 | 0.19 | lasso | 24 | 0.20 | 5.8e-04 | 4.5 | 5.7 | 9.2e-09 | 0.36 | 0.38 | 0.34 | FALSE |
67 | Eye | Casp7 | gene expression | ENSRNOG00000056216 | 0.51 | 0.05 | blup | 2102 | 0.12 | 7.2e-03 | 4.9 | 5.8 | 6.5e-09 | -0.47 | 0.27 | 0.31 | FALSE |
68 | Eye | NA | gene expression | ENSRNOG00000065260 | 0.45 | 0.18 | top1 | 1 | 0.18 | 9.5e-04 | -11.4 | -11.4 | 5.4e-30 | 0.91 | 0.10 | 0.06 | FALSE |
69 | IL | Ces2c | gene expression | ENSRNOG00000036571 | 0.35 | 0.35 | top1 | 1 | 0.35 | 2.3e-09 | -9.9 | 9.9 | 3.0e-23 | -0.72 | 0.50 | 0.03 | FALSE |
70 | IL | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.19 | 0.13 | top1 | 1 | 0.13 | 5.3e-04 | -9.8 | 9.8 | 6.9e-23 | -0.79 | 0.08 | 0.05 | FALSE |
71 | IL | NA | gene expression | ENSRNOG00000065260 | 0.38 | 0.26 | top1 | 1 | 0.26 | 4.6e-07 | -5.6 | -5.6 | 2.7e-08 | 0.76 | 0.25 | 0.04 | FALSE |
72 | IL | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.39 | 0.23 | top1 | 1 | 0.23 | 3.5e-06 | 5.3 | -5.3 | 1.4e-07 | 0.32 | 0.20 | 0.05 | FALSE |
73 | IL | Atrnl1 | mRNA stability | ENSRNOG00000017406 | 0.21 | 0.09 | blup | 2586 | 0.15 | 1.7e-04 | 5.1 | -5.3 | 1.4e-07 | 0.23 | 0.47 | 0.48 | FALSE |
74 | IL | Dclre1a | mRNA stability | ENSRNOG00000026204 | 0.31 | 0.26 | lasso | 3 | 0.29 | 1.2e-07 | 6.2 | 6.0 | 1.8e-09 | -0.35 | 0.42 | 0.58 | FALSE |
75 | LHb | Gpam | gene expression | ENSRNOG00000015124 | 0.18 | 0.03 | blup | 2117 | 0.12 | 1.1e-03 | 4.6 | -5.7 | 1.5e-08 | 0.33 | 0.46 | 0.44 | FALSE |
76 | LHb | Gucy2g | gene expression | ENSRNOG00000015724 | 0.29 | 0.15 | enet | 9 | 0.21 | 9.6e-06 | 6.1 | -6.0 | 2.4e-09 | 0.35 | 0.52 | 0.46 | FALSE |
77 | LHb | AABR07007068.1 | gene expression | ENSRNOG00000017438 | 0.20 | 0.08 | top1 | 1 | 0.08 | 6.4e-03 | 5.2 | -5.2 | 1.7e-07 | 0.14 | 0.10 | 0.08 | FALSE |
78 | LHb | Ces2c | gene expression | ENSRNOG00000036571 | 0.25 | 0.12 | blup | 594 | 0.19 | 2.3e-05 | -9.9 | 9.6 | 8.7e-22 | -0.66 | 0.58 | 0.31 | FALSE |
79 | LHb | Tcf7l2 | gene expression | ENSRNOG00000049232 | 0.14 | 0.04 | lasso | 6 | 0.06 | 1.2e-02 | 6.1 | 6.2 | 5.8e-10 | -0.41 | 0.42 | 0.28 | FALSE |
80 | LHb | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.46 | 0.29 | top1 | 1 | 0.29 | 1.2e-07 | 5.1 | -5.1 | 3.3e-07 | 0.30 | 0.50 | 0.04 | FALSE |
81 | LHb | Atrnl1 | mRNA stability | ENSRNOG00000017406 | 0.21 | 0.14 | top1 | 1 | 0.14 | 3.1e-04 | 6.1 | -6.1 | 1.3e-09 | 0.23 | 0.12 | 0.22 | FALSE |
82 | LHb | Tcf7l2 | mRNA stability | ENSRNOG00000049232 | 0.15 | 0.07 | enet | 7 | 0.08 | 6.4e-03 | 4.2 | 5.4 | 5.7e-08 | -0.29 | 0.44 | 0.23 | FALSE |
83 | Liver | Casp7 | alternative TSS | ENSRNOT00000080511 | 0.02 | 0.01 | blup | 2101 | 0.01 | 8.5e-03 | 4.8 | -6.1 | 1.0e-09 | 0.42 | 0.47 | 0.32 | FALSE |
84 | Liver | Rab11fip2 | gene expression | ENSRNOG00000009523 | 0.03 | 0.00 | blup | 2371 | 0.01 | 1.3e-02 | -5.3 | -9.3 | 2.2e-20 | 0.80 | 0.40 | 0.23 | FALSE |
85 | Liver | Acsl5 | gene expression | ENSRNOG00000016265 | 0.05 | 0.03 | top1 | 1 | 0.03 | 1.4e-04 | 6.3 | 6.3 | 4.0e-10 | -0.41 | 0.10 | 0.11 | FALSE |
86 | Liver | Habp2 | gene expression | ENSRNOG00000016659 | 0.92 | 0.57 | top1 | 1 | 0.57 | 1.3e-76 | 6.3 | -6.3 | 2.3e-10 | 0.34 | 0.79 | 0.21 | FALSE |
87 | Liver | Nhlrc2 | gene expression | ENSRNOG00000016948 | 0.11 | 0.11 | top1 | 1 | 0.11 | 1.4e-12 | 5.2 | -5.2 | 2.5e-07 | 0.34 | 1.00 | 0.00 | FALSE |
88 | Liver | Fhip2a | gene expression | ENSRNOG00000017225 | 0.02 | 0.02 | top1 | 1 | 0.03 | 8.2e-04 | 6.5 | -6.5 | 6.9e-11 | 0.25 | 0.05 | 0.51 | FALSE |
89 | Liver | Trub1 | gene expression | ENSRNOG00000017321 | 0.42 | 0.43 | lasso | 23 | 0.44 | 3.5e-54 | 5.1 | -6.1 | 1.2e-09 | 0.41 | 0.94 | 0.06 | FALSE |
90 | Liver | Nanos1 | gene expression | ENSRNOG00000025060 | 0.03 | 0.02 | top1 | 1 | 0.02 | 1.2e-03 | -8.3 | -8.3 | 1.4e-16 | 0.70 | 0.07 | 0.03 | FALSE |
91 | Liver | Zfp950 | gene expression | ENSRNOG00000032668 | 0.03 | 0.01 | top1 | 1 | 0.01 | 7.7e-03 | -11.3 | -11.3 | 1.3e-29 | 0.75 | 0.03 | 0.03 | FALSE |
92 | Liver | Cacul1 | isoform ratio | ENSRNOT00000050617 | 0.03 | 0.02 | top1 | 1 | 0.02 | 1.3e-03 | -11.5 | 11.5 | 1.1e-30 | -0.94 | 0.07 | 0.03 | FALSE |
93 | Liver | Cacul1 | isoform ratio | ENSRNOT00000084760 | 0.03 | 0.01 | blup | 1780 | 0.02 | 4.5e-03 | -11.4 | -9.7 | 1.8e-22 | 0.83 | 0.31 | 0.42 | FALSE |
94 | Liver | AABR07007068.1 | isoform ratio | ENSRNOT00000119102 | 0.51 | 0.39 | top1 | 1 | 0.39 | 1.5e-46 | 5.2 | -5.2 | 2.5e-07 | 0.05 | 0.15 | 0.85 | FALSE |
95 | Liver | Gpam | intron excision ratio | chr1:254140727:254170436 | 0.02 | 0.01 | blup | 2121 | 0.01 | 1.0e-02 | 6.1 | -5.8 | 7.4e-09 | 0.39 | 0.47 | 0.43 | FALSE |
96 | Liver | Habp2 | intron excision ratio | chr1:255327227:255336618 | 0.70 | 0.39 | enet | 28 | 0.40 | 5.1e-47 | 6.3 | 6.3 | 2.6e-10 | -0.38 | 0.82 | 0.18 | FALSE |
97 | Liver | Habp2 | intron excision ratio | chr1:255327227:255338715 | 0.02 | 0.01 | enet | 468 | 0.01 | 8.3e-03 | 4.7 | -5.6 | 2.5e-08 | 0.18 | 0.49 | 0.19 | FALSE |
98 | Liver | Habp2 | intron excision ratio | chr1:255336728:255338715 | 0.61 | 0.37 | enet | 26 | 0.38 | 7.9e-44 | 6.4 | -6.3 | 3.1e-10 | 0.38 | 0.83 | 0.17 | FALSE |
99 | Liver | Nhlrc2 | intron excision ratio | chr1:255640509:255642738 | 0.23 | 0.26 | enet | 376 | 0.27 | 1.7e-29 | 5.2 | 5.1 | 2.8e-07 | -0.35 | 1.00 | 0.00 | FALSE |
100 | Liver | Tcf7l2 | intron excision ratio | chr1:254787414:254860496 | 0.03 | 0.00 | lasso | 14 | 0.00 | 2.1e-01 | 6.3 | -6.1 | 1.4e-09 | -0.31 | 0.35 | 0.48 | FALSE |
101 | Liver | Cacul1 | mRNA stability | ENSRNOG00000009954 | 0.03 | 0.01 | top1 | 1 | 0.01 | 1.4e-02 | -12.2 | 12.2 | 5.5e-34 | -0.94 | 0.05 | 0.03 | TRUE |
102 | Liver | Acsl5 | mRNA stability | ENSRNOG00000016265 | 0.06 | 0.05 | enet | 97 | 0.06 | 8.6e-07 | 6.1 | 6.1 | 7.8e-10 | -0.36 | 0.56 | 0.44 | FALSE |
103 | Liver | Habp2 | mRNA stability | ENSRNOG00000016659 | 0.47 | 0.38 | top1 | 1 | 0.38 | 4.8e-44 | 5.9 | -5.9 | 3.3e-09 | 0.35 | 0.98 | 0.02 | FALSE |
104 | Liver | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.02 | 0.01 | top1 | 1 | 0.01 | 1.2e-02 | 5.8 | -5.8 | 5.4e-09 | 0.26 | 0.07 | 0.03 | FALSE |
105 | NAcc | Prlhr | gene expression | ENSRNOG00000009922 | 0.14 | 0.09 | blup | 1904 | 0.11 | 2.3e-08 | -12.2 | 10.5 | 6.2e-26 | -0.93 | 0.17 | 0.83 | FALSE |
106 | NAcc | Cacul1 | gene expression | ENSRNOG00000009954 | 0.11 | 0.05 | top1 | 1 | 0.05 | 7.3e-05 | -5.6 | 5.6 | 1.8e-08 | -0.78 | 0.16 | 0.03 | FALSE |
107 | NAcc | Acsl5 | gene expression | ENSRNOG00000016265 | 0.09 | 0.07 | top1 | 1 | 0.07 | 4.0e-06 | 6.0 | 6.0 | 2.7e-09 | -0.41 | 0.61 | 0.18 | FALSE |
108 | NAcc | Zfp950 | gene expression | ENSRNOG00000032668 | 0.05 | 0.01 | lasso | 15 | 0.02 | 7.3e-03 | -9.2 | 10.3 | 5.7e-25 | -0.79 | 0.38 | 0.33 | FALSE |
109 | NAcc | Ces2c | gene expression | ENSRNOG00000036571 | 0.22 | 0.17 | blup | 597 | 0.22 | 5.3e-16 | -9.9 | 9.5 | 2.5e-21 | -0.65 | 1.00 | 0.00 | FALSE |
110 | NAcc | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.07 | 0.04 | top1 | 1 | 0.04 | 3.8e-04 | -11.5 | 11.5 | 1.9e-30 | -0.86 | 0.06 | 0.03 | TRUE |
111 | NAcc | Casp7 | gene expression | ENSRNOG00000056216 | 0.21 | 0.10 | enet | 179 | 0.12 | 3.5e-09 | 6.3 | 6.3 | 3.7e-10 | -0.37 | 0.41 | 0.59 | FALSE |
112 | NAcc | Cacul1 | isoform ratio | ENSRNOT00000050617 | 0.05 | 0.05 | blup | 1781 | 0.05 | 9.6e-05 | -11.9 | 11.5 | 1.0e-30 | -0.94 | 0.34 | 0.61 | FALSE |
113 | NAcc | Cacul1 | isoform ratio | ENSRNOT00000084760 | 0.05 | 0.05 | blup | 1781 | 0.05 | 1.6e-04 | -11.9 | -11.6 | 6.8e-31 | 0.94 | 0.34 | 0.60 | FALSE |
114 | NAcc | Acsl5 | isoform ratio | ENSRNOT00000110033 | 0.03 | 0.02 | top1 | 1 | 0.02 | 2.2e-02 | 5.9 | 5.9 | 3.5e-09 | -0.36 | 0.07 | 0.03 | FALSE |
115 | NAcc | Atrnl1 | isoform ratio | ENSRNOT00000118477 | 0.04 | 0.01 | blup | 2586 | 0.02 | 1.7e-02 | 5.0 | -5.1 | 2.8e-07 | 0.21 | 0.47 | 0.34 | FALSE |
116 | NAcc | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.09 | 0.03 | blup | 2417 | 0.06 | 3.4e-05 | 6.0 | -5.4 | 8.5e-08 | 0.37 | 0.48 | 0.50 | FALSE |
117 | OFC | Rab11fip2 | gene expression | ENSRNOG00000009523 | 0.30 | 0.23 | lasso | 17 | 0.27 | 5.1e-07 | -11.3 | -11.3 | 1.5e-29 | 0.98 | 0.47 | 0.52 | FALSE |
118 | OFC | Cacul1 | gene expression | ENSRNOG00000009954 | 0.45 | 0.24 | blup | 1782 | 0.41 | 9.5e-11 | -5.0 | 8.4 | 5.9e-17 | -0.80 | 0.41 | 0.59 | FALSE |
119 | OFC | Acsl5 | gene expression | ENSRNOG00000016265 | 0.32 | 0.16 | blup | 2066 | 0.19 | 2.8e-05 | 6.1 | -5.9 | 2.8e-09 | 0.36 | 0.56 | 0.43 | FALSE |
120 | OFC | Fhip2a | gene expression | ENSRNOG00000017225 | 0.16 | 0.09 | top1 | 1 | 0.09 | 4.6e-03 | 5.8 | -5.8 | 6.9e-09 | 0.25 | 0.14 | 0.05 | FALSE |
121 | OFC | Ces2c | gene expression | ENSRNOG00000036571 | 0.38 | 0.42 | top1 | 1 | 0.42 | 3.6e-11 | -9.9 | 9.9 | 5.9e-23 | -0.71 | 0.92 | 0.00 | FALSE |
122 | OFC | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.41 | 0.18 | enet | 17 | 0.26 | 7.0e-07 | -9.8 | 10.4 | 4.0e-25 | -0.81 | 0.96 | 0.02 | FALSE |
123 | OFC | Rab11fip2 | mRNA stability | ENSRNOG00000009523 | 0.16 | 0.19 | top1 | 1 | 0.19 | 2.9e-05 | -11.3 | -11.3 | 2.1e-29 | 0.89 | 0.12 | 0.05 | FALSE |
124 | OFC | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.55 | 0.16 | enet | 14 | 0.33 | 1.3e-08 | 5.7 | -5.7 | 1.0e-08 | 0.33 | 0.71 | 0.28 | FALSE |
125 | OFC | Dclre1a | mRNA stability | ENSRNOG00000026204 | 0.34 | 0.22 | enet | 11 | 0.29 | 1.1e-07 | 6.4 | 5.8 | 5.2e-09 | -0.39 | 0.48 | 0.51 | FALSE |
126 | PL | Rab11fip2 | gene expression | ENSRNOG00000009523 | 0.06 | 0.04 | enet | 76 | 0.05 | 1.5e-04 | -10.9 | -11.7 | 1.5e-31 | 0.91 | 0.35 | 0.64 | FALSE |
127 | PL | Cacul1 | gene expression | ENSRNOG00000009954 | 0.24 | 0.16 | enet | 45 | 0.18 | 2.4e-13 | -5.6 | 7.6 | 3.3e-14 | -0.77 | 1.00 | 0.00 | FALSE |
128 | PL | Gucy2g | gene expression | ENSRNOG00000015724 | 0.17 | 0.11 | lasso | 25 | 0.13 | 4.3e-10 | 4.7 | -5.4 | 5.1e-08 | 0.25 | 0.84 | 0.16 | FALSE |
129 | PL | Fhip2a | gene expression | ENSRNOG00000017225 | 0.08 | 0.04 | top1 | 1 | 0.04 | 4.2e-04 | 5.5 | -5.5 | 2.9e-08 | 0.21 | 0.17 | 0.05 | FALSE |
130 | PL | AABR07007068.1 | gene expression | ENSRNOG00000017438 | 0.39 | 0.15 | top1 | 1 | 0.15 | 2.0e-11 | 5.1 | -5.1 | 2.9e-07 | 0.02 | 0.17 | 0.83 | FALSE |
131 | PL | Ces2c | gene expression | ENSRNOG00000036571 | 0.39 | 0.38 | top1 | 1 | 0.38 | 3.4e-30 | -9.7 | 9.7 | 3.0e-22 | -0.71 | 1.00 | 0.00 | FALSE |
132 | PL | Sfxn4 | gene expression | ENSRNOG00000036572 | 0.17 | 0.05 | enet | 158 | 0.10 | 9.5e-08 | -9.9 | 8.4 | 4.0e-17 | -0.67 | 0.94 | 0.06 | FALSE |
133 | PL | Tcf7l2 | gene expression | ENSRNOG00000049232 | 0.04 | 0.02 | enet | 26 | 0.03 | 4.8e-03 | 6.3 | -6.3 | 2.8e-10 | 0.36 | 0.42 | 0.45 | FALSE |
134 | PL | Casp7 | gene expression | ENSRNOG00000056216 | 0.12 | 0.10 | enet | 37 | 0.10 | 2.6e-08 | 6.5 | 5.9 | 3.6e-09 | -0.42 | 0.33 | 0.67 | FALSE |
135 | PL | NA | gene expression | ENSRNOG00000065957 | 0.12 | 0.07 | top1 | 1 | 0.07 | 9.6e-06 | 7.2 | -7.2 | 4.7e-13 | 0.59 | 0.49 | 0.02 | TRUE |
136 | PL | NA | gene expression | ENSRNOG00000068145 | 0.06 | 0.03 | lasso | 13 | 0.04 | 6.9e-04 | 7.1 | -8.8 | 1.2e-18 | 0.76 | 0.46 | 0.41 | FALSE |
137 | PL | Cacul1 | isoform ratio | ENSRNOT00000050617 | 0.03 | 0.02 | top1 | 1 | 0.02 | 1.8e-02 | -11.9 | 11.9 | 6.6e-33 | -0.90 | 0.06 | 0.03 | FALSE |
138 | PL | AABR07007068.1 | isoform ratio | ENSRNOT00000104357 | 0.11 | 0.06 | top1 | 1 | 0.06 | 4.5e-05 | 5.1 | 5.1 | 3.3e-07 | -0.10 | 0.13 | 0.44 | FALSE |
139 | PL | Gpam | intron excision ratio | chr1:254140727:254170436 | 0.04 | 0.01 | lasso | 2 | 0.02 | 1.8e-02 | 6.0 | -6.0 | 1.6e-09 | 0.40 | 0.40 | 0.51 | FALSE |
140 | PL | Zfp950 | intron excision ratio | chr1:260237329:260247276 | 0.03 | 0.01 | blup | 954 | 0.02 | 1.2e-02 | -11.7 | 10.2 | 2.7e-24 | -0.78 | 0.24 | 0.49 | FALSE |
141 | PL | Tcf7l2 | intron excision ratio | chr1:254787414:254860496 | 0.04 | 0.02 | blup | 1837 | 0.02 | 1.3e-02 | 5.1 | -5.5 | 4.9e-08 | 0.26 | 0.51 | 0.16 | FALSE |
142 | PL | Afap1l2 | mRNA stability | ENSRNOG00000017164 | 0.20 | 0.09 | lasso | 16 | 0.10 | 3.1e-08 | 5.2 | -5.2 | 1.7e-07 | 0.21 | 0.60 | 0.40 | FALSE |
143 | PL | Atrnl1 | mRNA stability | ENSRNOG00000017406 | 0.14 | 0.06 | enet | 92 | 0.11 | 1.7e-08 | 5.9 | -5.3 | 1.4e-07 | 0.17 | 0.65 | 0.35 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.