chr15:35,841,493-43,041,493

Trait: Tibialis anterior weight

Best TWAS P=5.58e-09 · Best GWAS P=5.35e-09 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Bnip3l alternative TSS XM_039092965.1 0.08 1 0.06 1.8e-07 -5.35 8.70e-08 0.59 FALSE
Adipose Bnip3l alternative TSS XM_006252091.3 0.02 1 0.02 1.3e-03 5.35 8.70e-08 0.04 FALSE
Adipose Bnip3l alternative TSS XM_039092965.1 0.06 1 0.05 5.6e-06 -5.35 8.70e-08 0.43 FALSE
Adipose Fam124a gene expression Fam124a 0.03 2137 0.01 5.9e-02 5.55 2.82e-08 0.44 TRUE
Adipose Fzd3 gene expression Fzd3 0.03 1 0.03 5.3e-04 5.34 9.17e-08 0.1 FALSE
Adipose Gulo gene expression Gulo 0.24 1909 0.23 2.8e-25 5.27 1.36e-07 0.58 FALSE
Adipose Ints9 gene expression Ints9 0.1 1361 0.06 1.4e-07 -5.19 2.05e-07 0.63 FALSE
Adipose Kif13b gene expression Kif13b 0.08 1 0.09 7.8e-10 5.34 9.39e-08 0.63 FALSE
Adipose LOC120097019 gene expression LOC120097019 0.03 1558 0.02 4.5e-03 -5.25 1.52e-07 0.65 FALSE
Adipose LOC120097103 gene expression LOC120097103 0.03 1 0.02 2.5e-03 5.32 1.01e-07 0.05 FALSE
Adipose Ppp2r2a gene expression Ppp2r2a 0.07 1 0.05 3.7e-06 5.35 8.70e-08 0.56 FALSE
Adipose Sox7 gene expression Sox7 0.14 1399 0.09 3.4e-10 5.65 1.56e-08 0.78 FALSE
Adipose Bnip3l isoform ratio XM_039092965.1 0.1 1 0.08 3.1e-09 -5.38 7.37e-08 0.64 FALSE
Adipose Dock5 mRNA stability Dock5 0.12 470 0.1 1.8e-11 -5.36 8.39e-08 0.68 FALSE
Adipose Ints6 mRNA stability Ints6 0.02 1842 0.01 9.8e-03 -5.36 8.38e-08 0.36 FALSE
Adipose Ptk2b mRNA stability Ptk2b 0.03 1 0.02 2.7e-03 5.35 8.64e-08 0.06 FALSE
BLA Msra alternative TSS XM_039093217.1 0.1 1 0.06 2.3e-04 -5.27 1.37e-07 0.07 FALSE
BLA Prss55 alternative TSS XM_039093917.1 0.24 37 0.04 3.9e-03 -5.25 1.49e-07 0.55 FALSE
BLA Fbxo16 gene expression Fbxo16 0.26 31 0.16 6.3e-09 -5.18 2.19e-07 0.71 FALSE
BLA Gucy1b2 gene expression Gucy1b2 0.31 35 0.29 1.2e-15 -5.4 6.81e-08 0.47 FALSE
BLA Kctd9 gene expression Kctd9 0.1 1 0.07 1.1e-04 -5.29 1.22e-07 0.14 FALSE
BLA LOC102554746 gene expression LOC102554746 0.15 1 0.13 2.2e-07 5.52 3.36e-08 0.53 FALSE
BLA Nefm gene expression Nefm 0.14 488 0.06 2.4e-04 5.35 9.03e-08 0.64 FALSE
BLA Pinx1 gene expression Pinx1 0.06 9 0.03 7.9e-03 -5.57 2.51e-08 0.7 FALSE
BLA Prss55 gene expression Prss55 0.54 72 0.47 1.4e-27 -5.44 5.35e-08 0.73 FALSE
BLA Stmn4 gene expression Stmn4 0.08 1 0.05 1.2e-03 -5.26 1.46e-07 0.05 FALSE
BLA Wdfy2 gene expression Wdfy2 0.11 1789 0.04 5.9e-03 5.65 1.65e-08 0.23 FALSE
BLA Ints6 isoform ratio NM_001271488.1 0.06 1843 0.02 1.8e-02 -5.59 2.27e-08 0.38 FALSE
BLA Ints6 isoform ratio XM_039093512.1 0.08 1843 0.02 3.2e-02 5.22 1.77e-07 0.43 FALSE
BLA Prss55 isoform ratio XM_039093916.1 0.1 1 0.06 6.6e-04 -5.68 1.38e-08 0.24 FALSE
BLA Prss55 isoform ratio XM_039093917.1 0.1 19 0.05 1.3e-03 -5.53 3.26e-08 0.68 FALSE
BLA Prss55 intron excision ratio chr15_38340170_38344928 0.07 1 0.03 1.4e-02 5.27 1.37e-07 0.06 FALSE
BLA Ptk2b intron excision ratio chr15_40414856_40481059 0.3 7 0.15 2.3e-08 -5.47 4.48e-08 0.71 TRUE
BLA Rnaseh2b intron excision ratio chr15_36576723_36583517 0.07 1 0.06 2.2e-04 -5.69 1.27e-08 0.1 FALSE
BLA Dock5 mRNA stability Dock5 0.07 1 0.01 5.7e-02 5.29 1.22e-07 0.04 FALSE
BLA Fam124a mRNA stability Fam124a 0.1 1 0.08 3.7e-05 5.41 6.31e-08 0.09 FALSE
Brain Bnip3l alternative polyA NM_080888.2 0.03 1465 0.03 1.2e-03 5.36 8.25e-08 0.56 FALSE
Brain Bnip3l alternative polyA XM_039092964.1 0.03 1 0.03 7.9e-04 5.43 5.66e-08 0.05 FALSE
Brain Dock5 alternative polyA XM_039093338.1 0.04 473 0.03 5.3e-04 5.35 8.86e-08 0.63 FALSE
Brain Dock5 alternative polyA XM_039093339.1 0.03 473 0.03 7.1e-04 -5.35 8.75e-08 0.62 FALSE
Brain Prss55 alternative TSS XM_039093917.1 0.04 1 0.05 3.0e-05 5.69 1.28e-08 0.57 FALSE
Brain Prss55 alternative TSS XM_039093918.1 0.12 1 0.03 1.3e-03 -5.36 8.29e-08 0.34 FALSE
Brain Prss55 alternative TSS XM_039093917.1 0.08 1 0.06 1.9e-06 5.36 8.29e-08 0.62 FALSE
Brain Prss55 alternative TSS XM_039093918.1 0.24 1 0.04 6.5e-05 -5.36 8.29e-08 0.57 FALSE
Brain Dock5 gene expression Dock5 0.25 473 0.26 1.4e-24 -5.36 8.51e-08 0.67 FALSE
Brain Gucy1b2 gene expression Gucy1b2 0.23 7 0.24 1.6e-22 -5.43 5.63e-08 0.43 FALSE
Brain Ints6 gene expression Ints6 0.06 1843 0.05 1.1e-05 -5.65 1.61e-08 0.55 FALSE
Brain Kctd9 gene expression Kctd9 0.11 52 0.11 1.1e-10 -5.29 1.21e-07 0.74 FALSE
Brain LOC120097103 gene expression LOC120097103 0.09 1 0.13 8.7e-12 5.21 1.91e-07 0.5 FALSE
Brain Nefm gene expression Nefm 0.19 1 0.19 1.6e-17 -5.3 1.18e-07 0.65 FALSE
Brain Pinx1 gene expression Pinx1 0.11 1426 0.05 2.1e-05 5.3 1.17e-07 0.72 FALSE
Brain Prss52 gene expression Prss52 0.14 1 0.16 8.1e-15 5.37 7.76e-08 0.71 FALSE
Brain Prss55 gene expression Prss55 0.38 1 0.4 2.1e-39 5.23 1.68e-07 0.54 FALSE
Brain Stmn4 gene expression Stmn4 0.21 62 0.23 2.2e-21 -5.26 1.42e-07 0.37 FALSE
Brain Adra1a isoform ratio XM_039093212.1 0.06 2027 0.04 3.4e-04 5.33 9.90e-08 0.52 TRUE
Brain Dock5 isoform ratio XM_039093339.1 0.04 1 0.03 7.5e-04 5.33 9.68e-08 0.06 FALSE
Brain Prss55 isoform ratio XM_039093917.1 0.05 1 0.03 1.1e-03 5.36 8.29e-08 0.07 FALSE
Brain Prss55 isoform ratio XM_039093918.1 0.11 1 0.03 6.7e-04 -5.36 8.29e-08 0.38 FALSE
Brain Stmn4 isoform ratio NM_001270856.1 0.07 2138 0.06 5.8e-06 5.37 8.08e-08 0.49 FALSE
Brain Prss55 intron excision ratio chr15_38340170_38344928 0.07 26 0.06 1.6e-06 5.62 1.86e-08 0.74 FALSE
Brain Ptk2b intron excision ratio chr15_40414856_40481059 0.16 2108 0.16 5.7e-15 -5.32 1.05e-07 0.45 FALSE
Brain Stmn4 intron excision ratio chr15_40553358_40554341 0.31 19 0.17 8.5e-16 5.19 2.15e-07 0.43 FALSE
Brain Stmn4 intron excision ratio chr15_40554019_40554341 0.12 4 0.12 7.0e-11 -5.35 8.73e-08 0.58 FALSE
Brain Dock5 mRNA stability Dock5 0.06 473 0.05 1.4e-05 -5.35 8.84e-08 0.68 FALSE
Brain Extl3 mRNA stability Extl3 0.04 1385 0.02 2.4e-03 -5.55 2.92e-08 0.6 FALSE
IL Gucy1b2 gene expression Gucy1b2 0.24 1 0.09 4.3e-03 5.45 5.16e-08 0.05 FALSE
IL Nefl mRNA stability Nefl 0.18 1 0.04 4.3e-02 -5.29 1.22e-07 0.06 FALSE
LHb Bnip3l gene expression Bnip3l 0.29 1465 0.14 4.0e-04 -5.34 9.16e-08 0.53 FALSE
LHb Dock5 gene expression Dock5 0.41 473 0.21 1.2e-05 -5.35 8.80e-08 0.66 FALSE
LHb Gucy1b2 gene expression Gucy1b2 0.24 2144 0.11 1.8e-03 -5.18 2.19e-07 0.24 FALSE
LHb Kctd9 gene expression Kctd9 0.22 13 0.07 9.6e-03 -5.25 1.54e-07 0.46 FALSE
LHb LOC108352941 gene expression LOC108352941 0.29 1 0.15 2.0e-04 5.24 1.64e-07 0.1 FALSE
LHb Scara5 mRNA stability Scara5 0.19 1 0.04 3.9e-02 -5.24 1.64e-07 0.05 TRUE
Liver Chrna2 gene expression Chrna2 0.06 2038 0.06 6.1e-07 -5.21 1.89e-07 0.55 FALSE
Liver Dock5 gene expression Dock5 0.12 1 0.1 2.5e-11 5.33 9.68e-08 0.69 FALSE
Liver Extl3 gene expression Extl3 0.05 1 0.07 3.3e-08 5.3 1.18e-07 0.62 FALSE
Liver Prss52 gene expression Prss52 0.04 1 0.02 1.2e-03 5.83 5.58e-09 0.68 TRUE
Liver Wdfy2 gene expression Wdfy2 0.47 1788 0.41 4.9e-49 -5.38 7.41e-08 0.14 FALSE
Liver Zfp395 gene expression Zfp395 0.02 1 0.02 5.1e-03 -5.24 1.60e-07 0.04 FALSE
Liver Msra isoform ratio XM_039093216.1 0.04 1 0.02 1.2e-03 -5.37 7.76e-08 0.16 FALSE
Liver Rnaseh2b intron excision ratio chr15_36576723_36581882 0.06 1 0.06 1.3e-07 5.52 3.36e-08 0.55 FALSE
Liver Dock5 mRNA stability Dock5 0.02 1 0.02 4.6e-03 5.33 9.68e-08 0.03 FALSE
Liver Gucy1b2 mRNA stability Gucy1b2 0.15 2141 0.2 1.9e-21 -5.27 1.36e-07 0.4 FALSE
NAcc Defb41 gene expression Defb41 0.02 10 0.03 1.4e-04 -5.6 2.11e-08 0.52 FALSE
NAcc Dock5 gene expression Dock5 0.08 473 0.07 2.5e-08 -5.35 8.78e-08 0.68 FALSE
NAcc Extl3 gene expression Extl3 0.05 1 0.06 5.4e-07 -5.34 9.17e-08 0.68 FALSE
NAcc Fbxo16 gene expression Fbxo16 0.24 136 0.24 6.7e-27 5.17 2.28e-07 0.71 FALSE
NAcc Gucy1b2 gene expression Gucy1b2 0.23 1 0.25 2.3e-28 5.64 1.65e-08 0.7 FALSE
NAcc Ints6 gene expression Ints6 0.09 1 0.06 1.6e-07 5.36 8.43e-08 0.3 FALSE
NAcc Kctd9 gene expression Kctd9 0.19 327 0.12 5.0e-14 5.27 1.33e-07 0.78 FALSE
NAcc LOC102554746 gene expression LOC102554746 0.06 2080 0.08 3.9e-09 -5.34 9.20e-08 0.48 FALSE
NAcc LOC120097103 gene expression LOC120097103 0.03 1 0 1.2e-01 5.29 1.25e-07 0.05 FALSE
NAcc Nefm gene expression Nefm 0.1 488 0.08 6.9e-10 5.34 9.10e-08 0.68 FALSE
NAcc Prss55 gene expression Prss55 0.35 1481 0.27 1.5e-31 -5.18 2.22e-07 0.7 FALSE
NAcc Extl3 isoform ratio XM_039093622.1 0.03 1 0.01 2.6e-02 5.34 9.17e-08 0.04 TRUE
NAcc Stmn4 isoform ratio XM_008770778.2 0.03 1 0.01 7.3e-03 5.29 1.22e-07 0.09 FALSE
NAcc Stmn4 isoform ratio XM_039093677.1 0.42 12 0.27 2.0e-31 -5.3 1.17e-07 0 TRUE
NAcc Adra1a intron excision ratio chr15_40922033_40922127 0.03 2027 0.01 1.3e-02 5.41 6.31e-08 0.46 FALSE
NAcc Gucy1b2 intron excision ratio chr15_36640915_36643646 0.1 2144 0.04 4.9e-05 -5.58 2.38e-08 0.58 FALSE
NAcc Gucy1b2 intron excision ratio chr15_36642868_36643646 0.09 2144 0.03 7.8e-05 5.57 2.59e-08 0.58 FALSE
NAcc LOC102554489 intron excision ratio chr15_38820277_38825743 0.04 1 0.02 9.0e-04 -5.32 1.01e-07 0.1 FALSE
NAcc Ppp2r2a intron excision ratio chr15_41261896_41263615 0.06 1310 0.04 6.2e-06 5.33 9.75e-08 0.68 FALSE
NAcc Stmn4 intron excision ratio chr15_40553358_40553939 0.25 6 0.12 6.0e-14 -5.3 1.18e-07 0.48 FALSE
NAcc Stmn4 intron excision ratio chr15_40553358_40554341 0.24 1 0.1 4.2e-12 -5.18 2.17e-07 0.44 FALSE
NAcc Dock5 mRNA stability Dock5 0.05 473 0.03 1.4e-04 -5.36 8.49e-08 0.68 FALSE
NAcc Ppp2r2a mRNA stability Ppp2r2a 0.05 17 0.03 4.1e-04 5.36 8.31e-08 0.67 FALSE
OFC Bnip3l gene expression Bnip3l 0.2 25 0.04 3.3e-02 -5.44 5.46e-08 0.27 FALSE
PL Prss55 alternative TSS XM_039093917.1 0.03 1481 0.02 2.0e-03 -5.31 1.08e-07 0.66 FALSE
PL Prss55 alternative TSS XM_039093918.1 0.03 1 0.03 1.9e-04 -5.18 2.20e-07 0.05 FALSE
PL Prss55 alternative TSS XM_039093917.1 0.04 1481 0.03 2.8e-04 -5.21 1.84e-07 0.66 FALSE
PL Prss55 alternative TSS XM_039093918.1 0.05 1 0.05 1.3e-06 -5.18 2.20e-07 0.36 FALSE
PL Bnip3l gene expression Bnip3l 0.07 38 0.04 1.1e-05 5.2 1.98e-07 0.63 FALSE
PL Fam124a gene expression Fam124a 0.04 1 0.03 5.6e-04 -5.48 4.16e-08 0.06 FALSE
PL Fbxo16 gene expression Fbxo16 0.25 1 0.28 8.1e-31 5.21 1.91e-07 0.57 FALSE
PL Gucy1b2 gene expression Gucy1b2 0.42 48 0.4 2.1e-47 -5.37 7.89e-08 0.48 FALSE
PL Kctd9 gene expression Kctd9 0.12 1 0.12 3.4e-13 -5.34 9.19e-08 0.78 FALSE
PL LOC120097017 gene expression LOC120097017 0.03 1398 0.01 1.1e-02 5.41 6.33e-08 0.6 FALSE
PL Nefl gene expression Nefl 0.04 482 0.02 4.2e-03 -5.36 8.52e-08 0.62 FALSE
PL Nefm gene expression Nefm 0.05 1 0.04 4.2e-05 -5.34 9.37e-08 0.28 FALSE
PL Prss55 gene expression Prss55 0.22 1 0.21 1.7e-22 5.69 1.28e-08 0.93 FALSE
PL Wdfy2 gene expression Wdfy2 0.02 1 0.02 9.2e-04 -5.51 3.52e-08 0.06 FALSE
PL Prss55 isoform ratio XM_039093918.1 0.03 1 0.03 3.3e-04 -5.18 2.20e-07 0.04 FALSE
PL Adra1a intron excision ratio chr15_40922349_40926019 0.02 1 0.01 3.5e-02 5.39 6.90e-08 0.04 FALSE
PL Ptk2b intron excision ratio chr15_40414856_40481059 0.53 71 0.26 6.3e-28 5.28 1.31e-07 0.49 FALSE
pVTA Prss55 alternative TSS XM_039093917.1 0.16 1 0.14 1.1e-06 5.35 8.88e-08 0.65 FALSE
pVTA Prss55 alternative TSS XM_039093917.1 0.15 1 0.14 1.0e-06 5.35 8.88e-08 0.61 FALSE
pVTA Dock5 gene expression Dock5 0.37 473 0.26 1.4e-11 -5.34 9.46e-08 0.68 FALSE
pVTA Extl3 gene expression Extl3 0.12 1 0.13 3.7e-06 -5.42 5.81e-08 0.48 FALSE
pVTA Fbxo16 gene expression Fbxo16 0.1 1428 0.04 5.4e-03 -5.57 2.58e-08 0.66 FALSE
pVTA Kctd9 gene expression Kctd9 0.09 327 0.08 2.2e-04 5.38 7.51e-08 0.74 FALSE
pVTA LOC102554746 gene expression LOC102554746 0.26 1 0.23 2.4e-10 5.65 1.60e-08 0.71 FALSE
pVTA LOC120097012 gene expression LOC120097012 0.09 1 0.09 1.4e-04 -5.34 9.25e-08 0.15 FALSE
pVTA Wdfy2 gene expression Wdfy2 0.09 1789 0.05 2.4e-03 5.52 3.37e-08 0.32 FALSE
pVTA Rnaseh2b intron excision ratio chr15_36495129_36498293 0.11 1 0.09 1.3e-04 5.65 1.60e-08 0.13 FALSE
pVTA Fam124a mRNA stability Fam124a 0.1 2140 0.04 1.1e-02 -5.19 2.10e-07 0.37 FALSE