Best TWAS P=3.96e-10 · Best GWAS P=2.41e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.14 | 1 | 0.12 | 7.1e-13 | 5.29 | 1.21e-07 | 0.92 | FALSE |
Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.14 | 1 | 0.12 | 3.9e-13 | -5.29 | 1.21e-07 | 0.92 | FALSE |
Adipose | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.22 | 116 | 0.13 | 3.4e-14 | 5.58 | 2.45e-08 | 0.79 | FALSE |
Adipose | Pet100 | alternative TSS | ENSRNOT00000107172 | 0.22 | 122 | 0.13 | 2.6e-14 | -5.59 | 2.24e-08 | 0.79 | FALSE |
Adipose | Trappc5 | gene expression | ENSRNOG00000001003 | 0.09 | 1 | 0.03 | 9.9e-05 | -5.38 | 7.44e-08 | 0.26 | FALSE |
Adipose | Evi5l | gene expression | ENSRNOG00000001034 | 0.09 | 1 | -0 | 4.2e-01 | 5.45 | 5.12e-08 | 0.04 | FALSE |
Adipose | Mcemp1 | gene expression | ENSRNOG00000028259 | 0.15 | 1 | 0.06 | 3.2e-07 | 5.3 | 1.15e-07 | 0.73 | FALSE |
Adipose | Insr | gene expression | ENSRNOG00000029986 | 0.13 | 1 | 0.02 | 4.3e-03 | 5.16 | 2.52e-07 | 0.03 | FALSE |
Adipose | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.32 | 16 | 0.24 | 1.2e-26 | -5.46 | 4.89e-08 | 0.93 | FALSE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000071928 | 0.23 | 64 | 0.13 | 1.8e-14 | 5.63 | 1.81e-08 | 0.82 | FALSE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000107172 | 0.23 | 66 | 0.13 | 2.6e-14 | -5.63 | 1.76e-08 | 0.82 | FALSE |
Adipose | Zfp958 | isoform ratio | ENSRNOT00000102786 | 0.03 | 169 | 0.01 | 6.9e-03 | 5.43 | 5.72e-08 | 0.3 | FALSE |
Adipose | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.03 | 1113 | 0.01 | 2.8e-02 | 5.56 | 2.67e-08 | 0.19 | FALSE |
Adipose | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 2406 | 0.07 | 9.4e-09 | 5.65 | 1.60e-08 | 0.24 | FALSE |
Adipose | Cers4 | mRNA stability | ENSRNOG00000001072 | 0.14 | 1 | 0.09 | 1.7e-10 | 5.09 | 3.49e-07 | 0.6 | FALSE |
BLA | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.19 | 1 | 0.13 | 1.6e-07 | -5.3 | 1.17e-07 | 0.64 | FALSE |
BLA | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.36 | 13 | 0.19 | 1.7e-10 | -5.8 | 6.58e-09 | 0.8 | FALSE |
BLA | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.35 | 11 | 0.2 | 9.8e-11 | 5.78 | 7.26e-09 | 0.8 | FALSE |
BLA | Cers4 | mRNA stability | ENSRNOG00000001072 | 0.16 | 2109 | 0.08 | 5.0e-05 | 5.42 | 5.90e-08 | 0.3 | FALSE |
BLA | Stard13 | mRNA stability | ENSRNOG00000001090 | 0.08 | 1438 | 0.05 | 1.3e-03 | 5.25 | 1.52e-07 | 0.55 | FALSE |
Brain | Pcp2 | gene expression | ENSRNOG00000000993 | 0.12 | 1 | 0.1 | 1.8e-09 | 5.39 | 7.02e-08 | 0.82 | FALSE |
Brain | Elavl1 | gene expression | ENSRNOG00000001069 | 0.07 | 2406 | 0.02 | 4.4e-03 | -5.66 | 1.50e-08 | 0.33 | FALSE |
Brain | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.12 | 11 | 0.08 | 1.2e-07 | -5.83 | 5.58e-09 | 0.7 | FALSE |
Brain | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.06 | 2 | 0.05 | 3.5e-05 | -5.36 | 8.45e-08 | 0.9 | FALSE |
Brain | Trappc5 | intron excision ratio | chr12:1737769:1740114 | 0.05 | 18 | 0.03 | 5.1e-04 | -6.26 | 3.96e-10 | 0.63 | TRUE |
Brain | Insr | mRNA stability | ENSRNOG00000029986 | 0.72 | 150 | 0.6 | 8.8e-69 | 5.19 | 2.10e-07 | 0.85 | FALSE |
Eye | Elavl1 | intron excision ratio | chr12:2667464:2684652 | 0.69 | 30 | 0.31 | 1.3e-05 | 5.9 | 3.62e-09 | 0.25 | FALSE |
IL | Snapc2 | gene expression | ENSRNOG00000001056 | 0.35 | 5 | 0.03 | 8.2e-02 | -5.85 | 4.87e-09 | 0.36 | FALSE |
IL | Cers4 | gene expression | ENSRNOG00000001072 | 0.3 | 1 | 0.08 | 7.0e-03 | 5.12 | 2.99e-07 | 0.07 | FALSE |
IL | Insr | intron excision ratio | chr12:1257822:1307450 | 0.73 | 1 | 0.5 | 6.5e-14 | 5.48 | 4.35e-08 | 0.87 | FALSE |
IL | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.16 | 1 | 0.08 | 4.7e-03 | 5.21 | 1.88e-07 | 0.5 | FALSE |
LHb | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.31 | 1 | 0.1 | 3.0e-03 | -5.38 | 7.52e-08 | 0.09 | FALSE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.1 | 681 | 0.07 | 2.3e-08 | 5.38 | 7.59e-08 | 0.58 | FALSE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.1 | 681 | 0.07 | 1.5e-08 | -5.41 | 6.42e-08 | 0.58 | FALSE |
Liver | Mcoln1 | gene expression | ENSRNOG00000000975 | 0.09 | 39 | 0.04 | 1.7e-05 | 5.43 | 5.51e-08 | 0.83 | FALSE |
Liver | Timm44 | gene expression | ENSRNOG00000001058 | 0.11 | 10 | 0.04 | 7.4e-05 | 5.71 | 1.11e-08 | 0.65 | FALSE |
Liver | Stxbp2 | isoform ratio | ENSRNOT00000107607 | 0.15 | 10 | 0.09 | 5.9e-10 | -5.68 | 1.38e-08 | 0.76 | FALSE |
Liver | Stxbp2 | isoform ratio | ENSRNOT00000115749 | 0.1 | 1 | 0.05 | 6.9e-06 | 5.19 | 2.09e-07 | 0.46 | FALSE |
Liver | N4bp2l1 | isoform ratio | ENSRNOT00000110394 | 0.06 | 587 | 0.04 | 6.9e-05 | 5.35 | 8.61e-08 | 0.59 | FALSE |
Liver | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.21 | 1823 | 0.09 | 1.9e-10 | -5.78 | 7.29e-09 | 0.74 | FALSE |
Liver | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.18 | 152 | 0.07 | 3.1e-08 | 5.74 | 9.73e-09 | 0.6 | FALSE |
Liver | Zfp958 | intron excision ratio | chr12:3953566:3958666 | 0.03 | 1113 | 0.01 | 1.1e-02 | -5.6 | 2.18e-08 | 0.34 | FALSE |
Liver | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.03 | 1 | 0.02 | 2.0e-03 | 5.36 | 8.45e-08 | 0.16 | FALSE |
NAcc | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.08 | 1 | 0.03 | 1.4e-03 | 5.32 | 1.02e-07 | 0.14 | FALSE |
NAcc | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.1 | 1 | 0.07 | 9.6e-06 | -5.32 | 1.02e-07 | 0.31 | FALSE |
NAcc | Cers4 | gene expression | ENSRNOG00000001072 | 0.27 | 26 | 0.27 | 5.9e-20 | 5.76 | 8.47e-09 | 0.59 | FALSE |
NAcc | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.13 | 1531 | 0.08 | 1.3e-06 | -5.58 | 2.36e-08 | 0.49 | FALSE |
NAcc | Lrrc8e | gene expression | ENSRNOG00000028460 | 0.31 | 12 | 0.07 | 1.2e-05 | -5.6 | 2.17e-08 | 0.65 | TRUE |
NAcc | Trappc5 | isoform ratio | ENSRNOT00000001327 | 0.11 | 38 | 0.04 | 2.9e-04 | -5.69 | 1.31e-08 | 0.81 | FALSE |
NAcc | Trappc5 | isoform ratio | ENSRNOT00000111016 | 0.09 | 29 | 0.03 | 5.1e-03 | 5.66 | 1.47e-08 | 0.78 | FALSE |
NAcc | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.13 | 1 | 0.06 | 1.3e-05 | -5.43 | 5.77e-08 | 0.76 | FALSE |
NAcc | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.14 | 42 | 0.09 | 4.2e-07 | 5.36 | 8.20e-08 | 0.9 | FALSE |
NAcc | Insr | mRNA stability | ENSRNOG00000029986 | 0.37 | 29 | 0.23 | 1.8e-17 | 5.21 | 1.93e-07 | 0.84 | FALSE |
OFC | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.43 | 1 | 0.14 | 2.8e-04 | -5.41 | 6.27e-08 | 0.08 | FALSE |
OFC | Snapc2 | gene expression | ENSRNOG00000001056 | 0.54 | 2272 | 0.12 | 1.0e-03 | -5.96 | 2.56e-09 | 0.49 | TRUE |
OFC | Insr | intron excision ratio | chr12:1257822:1307450 | 0.64 | 1 | 0.28 | 2.2e-07 | 5.48 | 4.35e-08 | 0.7 | FALSE |
OFC | Insr | mRNA stability | ENSRNOG00000029986 | 0.82 | 1 | 0.37 | 1.0e-09 | 5.32 | 1.02e-07 | 0.69 | TRUE |
PL | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.13 | 1819 | 0.06 | 2.6e-05 | -5.82 | 5.96e-09 | 0.71 | FALSE |
PL | Snapc2 | gene expression | ENSRNOG00000001056 | 0.47 | 50 | 0.28 | 8.7e-22 | -5.14 | 2.82e-07 | 0.72 | FALSE |
PL | Arhgef18 | isoform ratio | ENSRNOT00000066281 | 0.07 | 1 | 0.05 | 8.6e-05 | 5.3 | 1.19e-07 | 0.12 | TRUE |
PL | Arhgef18 | isoform ratio | ENSRNOT00000110862 | 0.08 | 1 | 0.06 | 2.4e-05 | -5.3 | 1.19e-07 | 0.26 | FALSE |
PL | Snapc2 | intron excision ratio | chr12:2606007:2606962 | 0.06 | 1 | 0.04 | 2.5e-04 | 5.19 | 2.15e-07 | 0.34 | FALSE |
PL | Snapc2 | intron excision ratio | chr12:2606335:2606962 | 0.18 | 1 | 0.16 | 6.0e-12 | -5.21 | 1.91e-07 | 0.81 | FALSE |
PL | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.49 | 1822 | 0.18 | 2.5e-13 | -5.52 | 3.39e-08 | 0.44 | FALSE |
PL | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.38 | 17 | 0.16 | 1.8e-12 | 5.26 | 1.43e-07 | 0.4 | TRUE |
PL | Insr | mRNA stability | ENSRNOG00000029986 | 0.65 | 32 | 0.49 | 2.3e-42 | 5.23 | 1.71e-07 | 0.84 | FALSE |