Best TWAS P=7.306218e-09 · Best GWAS P=5.354271e-09 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Bnip3l | alternative TSS | ENSRNOT00000095519 | 0.06 | 0.05 | blup | 1461 | 0.05 | 4.1e-06 | 5.4 | 5.2 | 2.0e-07 | 0.30 | 0.38 | 0.62 | FALSE |
2 | Adipose | Bnip3l | alternative TSS | ENSRNOT00000014798 | 0.03 | 0.02 | blup | 1461 | 0.02 | 1.3e-03 | 5.5 | -5.1 | 2.6e-07 | -0.29 | 0.40 | 0.54 | FALSE |
3 | Adipose | Ppp2r2a | alternative TSS | ENSRNOT00000099993 | 0.03 | 0.03 | top1 | 1 | 0.03 | 1.8e-04 | 5.4 | -5.4 | 7.7e-08 | -0.34 | 0.06 | 0.07 | FALSE |
4 | Adipose | Ppp2r2a | alternative TSS | ENSRNOT00000099993 | 0.04 | 0.03 | top1 | 1 | 0.03 | 9.6e-05 | 5.4 | -5.4 | 7.7e-08 | -0.33 | 0.07 | 0.12 | FALSE |
5 | Adipose | Trim35 | gene expression | ENSRNOG00000009449 | 0.14 | 0.08 | top1 | 1 | 0.07 | 9.5e-09 | 5.4 | -5.4 | 8.2e-08 | -0.44 | 0.30 | 0.70 | FALSE |
6 | Adipose | Fam124a | gene expression | ENSRNOG00000009802 | 0.03 | 0.03 | top1 | 1 | 0.03 | 3.1e-04 | 5.8 | 5.8 | 7.3e-09 | 0.95 | 0.09 | 0.28 | TRUE |
7 | Adipose | Ppp2r2a | gene expression | ENSRNOG00000011158 | 0.07 | 0.06 | top1 | 1 | 0.06 | 3.1e-07 | 5.4 | -5.4 | 7.7e-08 | -0.33 | 0.30 | 0.66 | FALSE |
8 | Adipose | Sox7 | gene expression | ENSRNOG00000012049 | 0.11 | 0.07 | blup | 1398 | 0.09 | 5.9e-10 | 5.7 | 5.5 | 3.2e-08 | 0.65 | 0.22 | 0.78 | FALSE |
9 | Adipose | Kif13b | gene expression | ENSRNOG00000013089 | 0.08 | 0.09 | top1 | 1 | 0.09 | 9.2e-10 | 5.3 | -5.3 | 1.0e-07 | -0.63 | 0.39 | 0.61 | FALSE |
10 | Adipose | Ints9 | gene expression | ENSRNOG00000013459 | 0.09 | 0.08 | top1 | 1 | 0.08 | 5.4e-09 | 5.3 | -5.3 | 1.0e-07 | -0.62 | 0.36 | 0.64 | FALSE |
11 | Adipose | Nefm | gene expression | ENSRNOG00000013916 | 0.30 | 0.25 | top1 | 1 | 0.25 | 2.3e-27 | 5.3 | 5.3 | 1.2e-07 | 0.36 | 0.36 | 0.64 | FALSE |
12 | Adipose | Gulo | gene expression | ENSRNOG00000016648 | 0.24 | 0.23 | blup | 1905 | 0.23 | 9.3e-26 | 4.9 | 5.3 | 1.4e-07 | 0.47 | 0.43 | 0.57 | FALSE |
13 | Adipose | Dock5 | gene expression | ENSRNOG00000024703 | 0.11 | 0.09 | top1 | 1 | 0.09 | 3.4e-10 | 5.1 | -5.1 | 2.7e-07 | -0.36 | 0.54 | 0.46 | FALSE |
14 | Adipose | Ptk2b | gene expression | ENSRNOG00000027839 | 0.14 | 0.08 | top1 | 1 | 0.08 | 3.3e-09 | 5.5 | -5.5 | 4.5e-08 | -0.45 | 0.19 | 0.81 | FALSE |
15 | Adipose | Fzd3 | gene expression | ENSRNOG00000047211 | 0.03 | 0.02 | lasso | 18 | 0.02 | 3.0e-03 | 5.3 | -5.5 | 4.4e-08 | -0.63 | 0.32 | 0.65 | FALSE |
16 | Adipose | Bnip3l | isoform ratio | ENSRNOT00000095519 | 0.04 | 0.04 | top1 | 1 | 0.04 | 3.3e-05 | 5.4 | 5.4 | 7.4e-08 | 0.31 | 0.14 | 0.22 | FALSE |
17 | Adipose | Ppp2r2a | isoform ratio | ENSRNOT00000099993 | 0.05 | 0.04 | top1 | 1 | 0.04 | 1.5e-05 | 5.4 | -5.4 | 7.7e-08 | -0.34 | 0.14 | 0.29 | FALSE |
18 | Adipose | Rnaseh2b | mRNA stability | ENSRNOG00000009192 | 0.02 | 0.02 | top1 | 1 | 0.02 | 1.2e-03 | 5.8 | -5.8 | 7.3e-09 | -0.96 | 0.07 | 0.10 | FALSE |
19 | Adipose | Dpysl2 | mRNA stability | ENSRNOG00000009625 | 0.04 | 0.01 | blup | 1614 | 0.02 | 2.0e-03 | 5.5 | 5.2 | 2.5e-07 | 0.29 | 0.43 | 0.56 | FALSE |
20 | Adipose | Ints6 | mRNA stability | ENSRNOG00000009873 | 0.02 | 0.00 | blup | 1830 | 0.01 | 9.8e-03 | 5.5 | -5.4 | 6.2e-08 | -0.86 | 0.45 | 0.32 | TRUE |
21 | Adipose | Dock5 | mRNA stability | ENSRNOG00000024703 | 0.13 | 0.11 | top1 | 1 | 0.11 | 3.8e-12 | 5.3 | -5.3 | 9.7e-08 | -0.36 | 0.31 | 0.69 | FALSE |
22 | Adipose | Ptk2b | mRNA stability | ENSRNOG00000027839 | 0.03 | 0.02 | top1 | 1 | 0.02 | 3.0e-03 | 5.4 | -5.4 | 8.2e-08 | -0.41 | 0.06 | 0.04 | FALSE |
23 | BLA | Msra | alternative TSS | ENSRNOT00000102126 | 0.12 | 0.06 | blup | 1225 | 0.08 | 2.8e-05 | 5.2 | 5.2 | 1.6e-07 | 0.61 | 0.42 | 0.57 | FALSE |
24 | BLA | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.27 | 0.30 | top1 | 1 | 0.30 | 1.6e-16 | 5.5 | -5.5 | 4.8e-08 | -0.96 | 0.54 | 0.46 | FALSE |
25 | BLA | Wdfy2 | gene expression | ENSRNOG00000010042 | 0.16 | 0.09 | enet | 47 | 0.09 | 1.1e-05 | 5.1 | 5.3 | 1.3e-07 | 0.78 | 0.81 | 0.17 | TRUE |
26 | BLA | Pinx1 | gene expression | ENSRNOG00000012012 | 0.07 | 0.04 | enet | 13 | 0.05 | 1.7e-03 | 5.5 | 5.6 | 1.9e-08 | 0.62 | 0.20 | 0.71 | FALSE |
27 | BLA | Kctd9 | gene expression | ENSRNOG00000012951 | 0.09 | 0.06 | top1 | 1 | 0.06 | 3.0e-04 | 5.3 | 5.3 | 1.2e-07 | 0.36 | 0.03 | 0.08 | FALSE |
28 | BLA | Nefm | gene expression | ENSRNOG00000013916 | 0.14 | 0.06 | lasso | 32 | 0.07 | 1.3e-04 | 5.3 | 5.3 | 1.2e-07 | 0.35 | 0.32 | 0.65 | FALSE |
29 | BLA | Prss55 | gene expression | ENSRNOG00000047258 | 0.37 | 0.31 | lasso | 28 | 0.32 | 1.9e-17 | 5.6 | -5.5 | 3.4e-08 | -0.61 | 0.23 | 0.77 | FALSE |
30 | BLA | NA | gene expression | ENSRNOG00000047632 | 0.13 | 0.06 | top1 | 1 | 0.06 | 4.9e-04 | 5.3 | -5.3 | 8.9e-08 | -0.66 | 0.20 | 0.38 | FALSE |
31 | BLA | Stmn4 | gene expression | ENSRNOG00000053334 | 0.08 | 0.06 | top1 | 1 | 0.06 | 5.9e-04 | 5.3 | 5.3 | 1.2e-07 | 0.41 | 0.09 | 0.06 | FALSE |
32 | BLA | NA | gene expression | ENSRNOG00000070558 | 0.12 | 0.10 | lasso | 6 | 0.11 | 2.7e-06 | 5.5 | -5.2 | 2.3e-07 | 0.88 | 0.43 | 0.57 | TRUE |
33 | BLA | Msra | isoform ratio | ENSRNOT00000102126 | 0.16 | 0.14 | top1 | 1 | 0.14 | 7.2e-08 | 5.3 | 5.3 | 8.9e-08 | 0.63 | 0.34 | 0.62 | FALSE |
34 | BLA | Rnaseh2b | intron excision ratio | chr15:36576723:36583517 | 0.07 | 0.05 | blup | 2320 | 0.06 | 6.4e-04 | 5.7 | 5.1 | 2.8e-07 | 0.95 | 0.62 | 0.31 | FALSE |
35 | BLA | Ptk2b | intron excision ratio | chr15:40414856:40481059 | 0.27 | 0.12 | blup | 2104 | 0.15 | 1.6e-08 | 5.3 | -5.5 | 4.2e-08 | -0.41 | 0.26 | 0.74 | FALSE |
36 | BLA | Prss55 | intron excision ratio | chr15:38340170:38344928 | 0.06 | 0.04 | top1 | 1 | 0.04 | 2.6e-03 | 5.6 | -5.6 | 2.0e-08 | -0.65 | 0.06 | 0.10 | FALSE |
37 | BLA | Stmn4 | intron excision ratio | chr15:40541457:40551926 | 0.11 | 0.05 | top1 | 1 | 0.05 | 1.3e-03 | 5.3 | -5.3 | 1.0e-07 | -0.44 | 0.10 | 0.06 | FALSE |
38 | BLA | Stmn4 | intron excision ratio | chr15:40554019:40554341 | 0.08 | 0.01 | enet | 9 | 0.04 | 3.4e-03 | 5.4 | -5.5 | 5.0e-08 | -0.42 | 0.38 | 0.45 | TRUE |
39 | BLA | Fam124a | mRNA stability | ENSRNOG00000009802 | 0.05 | 0.06 | top1 | 1 | 0.06 | 5.3e-04 | 5.5 | -5.5 | 3.5e-08 | -0.96 | 0.09 | 0.05 | FALSE |
40 | BLA | Prss55 | mRNA stability | ENSRNOG00000047258 | 0.06 | 0.01 | blup | 1472 | 0.01 | 9.0e-02 | 5.2 | -5.2 | 1.8e-07 | -0.66 | 0.31 | 0.45 | FALSE |
41 | Brain | Bnip3l | alternative polyA | ENSRNOT00000095519 | 0.08 | 0.05 | blup | 1462 | 0.06 | 2.7e-06 | 5.3 | 5.3 | 9.3e-08 | 0.32 | 0.35 | 0.65 | FALSE |
42 | Brain | Bnip3l | alternative polyA | ENSRNOT00000102793 | 0.08 | 0.05 | blup | 1462 | 0.06 | 2.0e-06 | 5.3 | -5.4 | 8.5e-08 | -0.33 | 0.35 | 0.65 | FALSE |
43 | Brain | Msra | alternative polyA | ENSRNOT00000016616 | 0.14 | 0.10 | blup | 1225 | 0.10 | 1.1e-09 | 5.3 | -5.5 | 3.3e-08 | -0.63 | 0.36 | 0.64 | FALSE |
44 | Brain | Msra | alternative polyA | ENSRNOT00000101265 | 0.15 | 0.10 | blup | 1225 | 0.10 | 1.2e-09 | 5.3 | 5.5 | 3.2e-08 | 0.63 | 0.36 | 0.64 | FALSE |
45 | Brain | Msra | alternative TSS | ENSRNOT00000095387 | 0.03 | 0.01 | blup | 1225 | 0.02 | 2.7e-03 | 5.4 | -5.3 | 1.1e-07 | -0.61 | 0.34 | 0.53 | FALSE |
46 | Brain | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.23 | 0.25 | lasso | 15 | 0.26 | 4.0e-24 | 5.5 | -5.5 | 4.9e-08 | -0.89 | 0.53 | 0.47 | FALSE |
47 | Brain | Pinx1 | gene expression | ENSRNOG00000012012 | 0.09 | 0.02 | enet | 15 | 0.05 | 3.4e-05 | 5.5 | 5.3 | 1.2e-07 | 0.58 | 0.24 | 0.75 | FALSE |
48 | Brain | Kctd9 | gene expression | ENSRNOG00000012951 | 0.10 | 0.10 | top1 | 1 | 0.10 | 1.3e-09 | 5.3 | 5.3 | 9.7e-08 | 0.36 | 0.23 | 0.77 | FALSE |
49 | Brain | Kif13b | gene expression | ENSRNOG00000013089 | 0.13 | 0.11 | enet | 117 | 0.12 | 7.1e-11 | 5.2 | -5.3 | 1.1e-07 | -0.56 | 0.38 | 0.62 | FALSE |
50 | Brain | Hmbox1 | gene expression | ENSRNOG00000013326 | 0.07 | 0.06 | top1 | 1 | 0.06 | 2.4e-06 | 5.2 | 5.2 | 1.9e-07 | 0.63 | 0.48 | 0.47 | FALSE |
51 | Brain | Nefm | gene expression | ENSRNOG00000013916 | 0.23 | 0.16 | lasso | 22 | 0.16 | 1.0e-14 | 5.3 | 5.3 | 1.2e-07 | 0.36 | 0.34 | 0.66 | FALSE |
52 | Brain | Scara3 | gene expression | ENSRNOG00000016177 | 0.44 | 0.24 | blup | 1842 | 0.26 | 5.0e-24 | 4.9 | -5.1 | 2.9e-07 | -0.45 | 0.50 | 0.50 | FALSE |
53 | Brain | Dock5 | gene expression | ENSRNOG00000024703 | 0.25 | 0.23 | blup | 470 | 0.23 | 7.4e-21 | 5.3 | -5.4 | 8.6e-08 | -0.36 | 0.32 | 0.68 | FALSE |
54 | Brain | NA | gene expression | ENSRNOG00000047632 | 0.15 | 0.18 | top1 | 1 | 0.18 | 7.5e-17 | 5.3 | -5.3 | 8.9e-08 | -0.65 | 0.32 | 0.69 | FALSE |
55 | Brain | Stmn4 | gene expression | ENSRNOG00000053334 | 0.18 | 0.19 | blup | 2132 | 0.20 | 1.2e-18 | 5.3 | 5.3 | 1.3e-07 | 0.42 | 0.56 | 0.44 | FALSE |
56 | Brain | NA | gene expression | ENSRNOG00000070558 | 0.09 | 0.07 | enet | 6 | 0.08 | 3.8e-08 | 4.8 | -5.5 | 3.3e-08 | -0.93 | 0.85 | 0.15 | TRUE |
57 | Brain | Msra | isoform ratio | ENSRNOT00000016616 | 0.18 | 0.10 | blup | 1225 | 0.10 | 1.3e-09 | 5.2 | -5.6 | 2.6e-08 | -0.63 | 0.37 | 0.63 | FALSE |
58 | Brain | Msra | intron excision ratio | chr15:38364214:38449622 | 0.13 | 0.15 | top1 | 1 | 0.15 | 1.3e-13 | 5.4 | 5.4 | 5.0e-08 | 0.61 | 0.24 | 0.76 | FALSE |
59 | Brain | Ptk2b | intron excision ratio | chr15:40414856:40481059 | 0.16 | 0.16 | top1 | 1 | 0.16 | 1.9e-14 | 5.2 | -5.2 | 2.2e-07 | -0.39 | 0.52 | 0.48 | FALSE |
60 | Brain | Prss55 | intron excision ratio | chr15:38340170:38344928 | 0.07 | 0.06 | blup | 1472 | 0.06 | 3.2e-06 | 5.6 | -5.2 | 1.8e-07 | -0.66 | 0.26 | 0.74 | TRUE |
61 | Brain | Stmn4 | intron excision ratio | chr15:40553358:40553939 | 0.24 | 0.11 | top1 | 1 | 0.11 | 3.5e-10 | 5.2 | -5.2 | 2.2e-07 | -0.41 | 0.56 | 0.44 | FALSE |
62 | Brain | Stmn4 | intron excision ratio | chr15:40553358:40554341 | 0.32 | 0.17 | top1 | 1 | 0.17 | 3.7e-15 | 5.2 | 5.2 | 2.2e-07 | 0.42 | 0.56 | 0.44 | FALSE |
63 | Brain | Stmn4 | intron excision ratio | chr15:40554019:40554341 | 0.11 | 0.10 | blup | 2132 | 0.10 | 8.8e-10 | 5.3 | -5.3 | 1.3e-07 | -0.43 | 0.44 | 0.56 | FALSE |
64 | Brain | Stmn4 | intron excision ratio | chr15:40555719:40556362 | 0.03 | 0.00 | blup | 2132 | 0.01 | 5.5e-02 | 5.5 | -5.1 | 2.9e-07 | -0.38 | 0.44 | 0.42 | FALSE |
65 | Brain | NA | mRNA stability | ENSRNOG00000009522 | 0.09 | 0.06 | blup | 2027 | 0.07 | 4.8e-07 | 5.3 | -5.4 | 5.2e-08 | -0.39 | 0.36 | 0.64 | FALSE |
66 | Brain | Kif13b | mRNA stability | ENSRNOG00000013089 | 0.03 | 0.01 | blup | 1259 | 0.02 | 6.8e-03 | -3.9 | -5.2 | 2.3e-07 | -0.59 | 0.40 | 0.43 | FALSE |
67 | Brain | Dock5 | mRNA stability | ENSRNOG00000024703 | 0.05 | 0.04 | top1 | 1 | 0.04 | 1.6e-04 | 5.3 | -5.3 | 9.1e-08 | -0.36 | 0.06 | 0.14 | FALSE |
68 | IL | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.22 | 0.05 | top1 | 1 | 0.05 | 2.3e-02 | 5.3 | -5.3 | 9.2e-08 | -0.96 | 0.11 | 0.05 | FALSE |
69 | IL | Nefm | gene expression | ENSRNOG00000013916 | 0.26 | 0.05 | blup | 485 | 0.12 | 9.9e-04 | 5.4 | 5.3 | 9.2e-08 | 0.36 | 0.27 | 0.55 | FALSE |
70 | IL | Stmn4 | intron excision ratio | chr15:40553358:40553939 | 0.40 | 0.17 | blup | 2128 | 0.17 | 5.6e-05 | 5.5 | -5.3 | 1.1e-07 | -0.40 | 0.45 | 0.52 | FALSE |
71 | IL | Stmn4 | intron excision ratio | chr15:40553358:40554341 | 0.21 | 0.00 | blup | 2128 | 0.04 | 4.6e-02 | 5.5 | 5.2 | 2.2e-07 | 0.37 | 0.37 | 0.32 | FALSE |
72 | IL | Nefl | mRNA stability | ENSRNOG00000013658 | 0.16 | 0.04 | blup | 479 | 0.06 | 1.5e-02 | 5.4 | 5.3 | 9.0e-08 | 0.36 | 0.15 | 0.32 | FALSE |
73 | LHb | Bnip3l | gene expression | ENSRNOG00000009820 | 0.29 | 0.06 | blup | 1454 | 0.13 | 5.2e-04 | 3.6 | -5.2 | 2.3e-07 | -0.30 | 0.37 | 0.49 | FALSE |
74 | LHb | Kctd9 | gene expression | ENSRNOG00000012951 | 0.21 | 0.02 | blup | 322 | 0.06 | 1.9e-02 | 5.4 | 5.3 | 1.0e-07 | 0.33 | 0.12 | 0.38 | FALSE |
75 | LHb | Nefm | gene expression | ENSRNOG00000013916 | 0.17 | 0.05 | top1 | 1 | 0.05 | 2.5e-02 | 5.3 | 5.3 | 1.2e-07 | 0.36 | 0.03 | 0.06 | FALSE |
76 | LHb | Dock5 | gene expression | ENSRNOG00000024703 | 0.38 | 0.17 | blup | 468 | 0.21 | 1.3e-05 | 5.3 | -5.4 | 8.8e-08 | -0.36 | 0.31 | 0.67 | FALSE |
77 | LHb | NA | gene expression | ENSRNOG00000070558 | 0.16 | 0.07 | top1 | 1 | 0.07 | 9.0e-03 | 5.5 | -5.5 | 4.7e-08 | -0.96 | 0.10 | 0.05 | FALSE |
78 | Liver | Gucy1b2 | alternative TSS | ENSRNOT00000012948 | 0.02 | 0.01 | blup | 2125 | 0.02 | 5.7e-03 | 4.6 | -5.4 | 7.3e-08 | -0.96 | 0.53 | 0.39 | FALSE |
79 | Liver | Gucy1b2 | alternative TSS | ENSRNOT00000081912 | 0.02 | 0.01 | blup | 2125 | 0.02 | 5.7e-03 | 4.6 | 5.4 | 6.9e-08 | 0.96 | 0.52 | 0.40 | FALSE |
80 | Liver | Ints9 | alternative TSS | ENSRNOT00000096924 | 0.02 | 0.02 | top1 | 1 | 0.02 | 5.2e-03 | 5.3 | -5.3 | 9.2e-08 | -0.62 | 0.04 | 0.04 | FALSE |
81 | Liver | Ints9 | alternative TSS | ENSRNOT00000096924 | 0.02 | 0.02 | top1 | 1 | 0.02 | 5.4e-03 | 5.4 | -5.4 | 7.6e-08 | -0.62 | 0.04 | 0.04 | FALSE |
82 | Liver | Wdfy2 | gene expression | ENSRNOG00000010042 | 0.38 | 0.36 | enet | 217 | 0.38 | 6.5e-44 | 5.1 | -5.2 | 1.8e-07 | -0.67 | 0.86 | 0.14 | FALSE |
83 | Liver | Extl3 | gene expression | ENSRNOG00000013581 | 0.05 | 0.06 | top1 | 1 | 0.06 | 6.2e-07 | 5.2 | -5.2 | 1.6e-07 | -0.62 | 0.44 | 0.54 | FALSE |
84 | Liver | Gulo | gene expression | ENSRNOG00000016648 | 0.19 | 0.19 | blup | 1905 | 0.19 | 8.9e-21 | 4.9 | 5.1 | 2.7e-07 | 0.47 | 0.54 | 0.47 | FALSE |
85 | Liver | Chrna2 | gene expression | ENSRNOG00000017424 | 0.06 | 0.05 | blup | 2032 | 0.06 | 8.2e-07 | 5.4 | -5.2 | 2.3e-07 | -0.44 | 0.45 | 0.55 | FALSE |
86 | Liver | Dock5 | gene expression | ENSRNOG00000024703 | 0.12 | 0.10 | top1 | 1 | 0.10 | 6.9e-11 | 5.1 | -5.1 | 2.7e-07 | -0.36 | 0.54 | 0.46 | FALSE |
87 | Liver | NA | gene expression | ENSRNOG00000047632 | 0.04 | 0.02 | blup | 1478 | 0.03 | 4.5e-04 | 5.8 | -5.3 | 1.1e-07 | -0.66 | 0.28 | 0.69 | FALSE |
88 | Liver | Rnaseh2b | intron excision ratio | chr15:36576723:36581882 | 0.06 | 0.05 | blup | 2319 | 0.06 | 6.7e-07 | 5.5 | -5.2 | 1.7e-07 | -0.95 | 0.49 | 0.51 | FALSE |
89 | Liver | Gucy1b2 | intron excision ratio | chr15:36640915:36643646 | 0.08 | 0.08 | blup | 2125 | 0.09 | 2.3e-10 | 5.0 | -5.5 | 4.2e-08 | -0.96 | 0.48 | 0.52 | FALSE |
90 | Liver | Gucy1b2 | mRNA stability | ENSRNOG00000009440 | 0.07 | 0.07 | blup | 2125 | 0.08 | 8.6e-09 | 4.9 | -5.2 | 2.2e-07 | -0.95 | 0.60 | 0.40 | FALSE |
91 | NAcc | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.32 | 0.02 | blup | 2121 | 0.05 | 3.5e-02 | 5.3 | -5.5 | 4.1e-08 | -0.85 | 0.29 | 0.30 | FALSE |
92 | NAcc | Msra | isoform ratio | ENSRNOT00000016616 | 0.24 | 0.14 | top1 | 1 | 0.14 | 4.1e-04 | 5.5 | -5.5 | 4.7e-08 | -0.63 | 0.07 | 0.07 | FALSE |
93 | NAcc | Msra | mRNA stability | ENSRNOG00000012440 | 0.21 | 0.03 | top1 | 1 | 0.03 | 8.2e-02 | 5.3 | 5.3 | 9.2e-08 | 0.61 | 0.07 | 0.06 | FALSE |
94 | NAcc2 | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.24 | 0.24 | lasso | 23 | 0.25 | 1.6e-13 | 5.5 | -5.5 | 4.4e-08 | -0.95 | 0.42 | 0.58 | FALSE |
95 | NAcc2 | Ints6 | gene expression | ENSRNOG00000009873 | 0.10 | 0.04 | blup | 1830 | 0.06 | 2.9e-04 | 5.4 | -5.1 | 3.3e-07 | -0.89 | 0.47 | 0.52 | FALSE |
96 | NAcc2 | Kif13b | gene expression | ENSRNOG00000013089 | 0.06 | 0.05 | top1 | 1 | 0.05 | 1.3e-03 | 5.3 | -5.3 | 1.0e-07 | -0.63 | 0.06 | 0.05 | FALSE |
97 | NAcc2 | Extl3 | gene expression | ENSRNOG00000013581 | 0.16 | 0.17 | lasso | 18 | 0.17 | 1.0e-09 | 5.3 | 5.3 | 9.8e-08 | 0.62 | 0.34 | 0.66 | FALSE |
98 | NAcc2 | Dock5 | gene expression | ENSRNOG00000024703 | 0.52 | 0.03 | enet | 136 | 0.04 | 4.8e-03 | 5.3 | -5.3 | 1.3e-07 | -0.36 | 0.24 | 0.50 | FALSE |
99 | NAcc2 | Prss55 | gene expression | ENSRNOG00000047258 | 0.35 | 0.20 | top1 | 1 | 0.20 | 7.5e-11 | 5.2 | -5.2 | 2.1e-07 | -0.66 | 0.50 | 0.50 | FALSE |
100 | NAcc2 | NA | gene expression | ENSRNOG00000047632 | 0.19 | 0.08 | top1 | 1 | 0.08 | 4.9e-05 | 5.2 | -5.2 | 2.1e-07 | -0.65 | 0.11 | 0.09 | FALSE |
101 | NAcc2 | NA | gene expression | ENSRNOG00000069433 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.8e-03 | 5.3 | 5.3 | 9.2e-08 | 0.59 | 0.07 | 0.05 | TRUE |
102 | NAcc2 | NA | gene expression | ENSRNOG00000070558 | 0.05 | 0.03 | top1 | 1 | 0.03 | 1.1e-02 | 5.5 | -5.5 | 4.6e-08 | -0.95 | 0.08 | 0.04 | FALSE |
103 | NAcc2 | Stmn4 | isoform ratio | ENSRNOT00000087709 | 0.07 | 0.03 | top1 | 1 | 0.03 | 5.9e-03 | 5.3 | 5.3 | 1.4e-07 | 0.45 | 0.09 | 0.05 | FALSE |
104 | NAcc2 | Stmn4 | isoform ratio | ENSRNOT00000091567 | 0.08 | 0.03 | enet | 19 | 0.03 | 7.6e-03 | 5.3 | -5.3 | 1.4e-07 | -0.44 | 0.40 | 0.40 | FALSE |
105 | NAcc2 | Gucy1b2 | intron excision ratio | chr15:36640915:36643646 | 0.12 | 0.06 | lasso | 7 | 0.09 | 1.7e-05 | 5.1 | -5.1 | 3.1e-07 | -0.67 | 0.55 | 0.22 | TRUE |
106 | NAcc2 | Ptk2b | intron excision ratio | chr15:40414856:40481059 | 0.47 | 0.07 | lasso | 7 | 0.08 | 5.2e-05 | 5.1 | -5.2 | 1.9e-07 | -0.45 | 0.55 | 0.44 | FALSE |
107 | NAcc2 | Stmn4 | intron excision ratio | chr15:40553358:40553939 | 0.16 | 0.07 | top1 | 1 | 0.07 | 1.2e-04 | 5.3 | -5.3 | 1.2e-07 | -0.43 | 0.16 | 0.17 | FALSE |
108 | NAcc2 | Stmn4 | intron excision ratio | chr15:40553358:40554341 | 0.14 | 0.05 | top1 | 1 | 0.05 | 8.0e-04 | 5.2 | 5.2 | 2.2e-07 | 0.44 | 0.19 | 0.13 | TRUE |
109 | NAcc2 | Stmn4 | intron excision ratio | chr15:40554019:40554341 | 0.07 | 0.01 | blup | 2132 | 0.03 | 1.4e-02 | 4.9 | -5.4 | 6.9e-08 | -0.43 | 0.36 | 0.39 | FALSE |
110 | OFC | Nefm | gene expression | ENSRNOG00000013916 | 0.96 | 0.22 | enet | 11 | 0.25 | 1.4e-06 | 5.3 | 5.3 | 1.1e-07 | 0.36 | 0.18 | 0.37 | TRUE |
111 | OFC | Stmn4 | intron excision ratio | chr15:40554019:40554341 | 0.23 | 0.08 | blup | 2128 | 0.09 | 4.0e-03 | 4.9 | -5.4 | 8.5e-08 | -0.45 | 0.35 | 0.31 | FALSE |
112 | OFC | NA | mRNA stability | ENSRNOG00000009522 | 0.19 | 0.06 | blup | 2019 | 0.09 | 3.1e-03 | 5.4 | -5.4 | 5.3e-08 | -0.36 | 0.33 | 0.40 | FALSE |
113 | PL | Msra | alternative polyA | ENSRNOT00000016616 | 0.17 | 0.05 | top1 | 1 | 0.05 | 2.6e-02 | 5.3 | -5.3 | 1.0e-07 | -0.62 | 0.06 | 0.05 | FALSE |
114 | PL | Msra | alternative polyA | ENSRNOT00000101265 | 0.17 | 0.04 | top1 | 1 | 0.04 | 3.2e-02 | 5.3 | 5.3 | 1.0e-07 | 0.62 | 0.06 | 0.05 | FALSE |
115 | PL | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.26 | 0.02 | blup | 2122 | 0.04 | 4.0e-02 | 5.5 | -5.5 | 3.2e-08 | -0.96 | 0.39 | 0.36 | FALSE |
116 | PL | Trim35 | gene expression | ENSRNOG00000009449 | 0.32 | 0.00 | enet | 8 | 0.02 | 1.0e-01 | -1.5 | 5.4 | 5.6e-08 | 0.28 | 0.39 | 0.04 | TRUE |
117 | PL | Fam124a | gene expression | ENSRNOG00000009802 | 0.21 | 0.05 | lasso | 5 | 0.06 | 1.7e-02 | 5.6 | 5.7 | 1.4e-08 | 0.90 | 0.34 | 0.23 | FALSE |
118 | PL | Nefm | gene expression | ENSRNOG00000013916 | 0.15 | 0.04 | blup | 485 | 0.06 | 1.4e-02 | 5.3 | 5.3 | 9.2e-08 | 0.36 | 0.15 | 0.30 | FALSE |
119 | PL | Stmn4 | gene expression | ENSRNOG00000053334 | 0.30 | 0.07 | blup | 2128 | 0.11 | 1.4e-03 | 5.4 | 5.2 | 2.3e-07 | 0.34 | 0.44 | 0.47 | FALSE |
120 | PL | Msra | isoform ratio | ENSRNOT00000016616 | 0.25 | 0.09 | top1 | 1 | 0.09 | 3.9e-03 | 5.3 | -5.3 | 1.0e-07 | -0.62 | 0.07 | 0.06 | FALSE |
121 | PL | Msra | isoform ratio | ENSRNOT00000102126 | 0.39 | 0.13 | top1 | 1 | 0.13 | 5.7e-04 | 5.3 | 5.3 | 1.0e-07 | 0.60 | 0.07 | 0.06 | FALSE |
122 | PL | NA | mRNA stability | ENSRNOG00000009522 | 0.21 | 0.11 | top1 | 1 | 0.11 | 1.5e-03 | 5.4 | -5.4 | 6.1e-08 | -0.35 | 0.10 | 0.06 | FALSE |
123 | PL2 | Gucy1b2 | gene expression | ENSRNOG00000009440 | 0.51 | 0.36 | blup | 2126 | 0.37 | 7.2e-21 | 5.4 | -5.2 | 1.7e-07 | -0.94 | 0.48 | 0.52 | FALSE |
124 | PL2 | Ints6 | gene expression | ENSRNOG00000009873 | 0.08 | 0.04 | blup | 1830 | 0.05 | 1.0e-03 | 5.5 | -5.6 | 2.2e-08 | -0.86 | 0.44 | 0.49 | TRUE |
125 | PL2 | Wdfy2 | gene expression | ENSRNOG00000010042 | 0.05 | 0.01 | blup | 1827 | 0.02 | 3.1e-02 | 5.5 | 5.5 | 4.0e-08 | 0.88 | 0.43 | 0.32 | FALSE |
126 | PL2 | Kctd9 | gene expression | ENSRNOG00000012951 | 0.07 | 0.03 | blup | 325 | 0.04 | 4.1e-03 | 5.4 | 5.4 | 8.2e-08 | 0.36 | 0.18 | 0.58 | FALSE |
127 | PL2 | Fbxo16 | gene expression | ENSRNOG00000014003 | 0.29 | 0.17 | enet | 143 | 0.18 | 2.7e-10 | 5.3 | -5.4 | 8.3e-08 | -0.61 | 0.30 | 0.70 | FALSE |
128 | PL2 | Prss55 | gene expression | ENSRNOG00000047258 | 0.28 | 0.15 | blup | 1472 | 0.16 | 4.4e-09 | 5.3 | -5.4 | 6.8e-08 | -0.62 | 0.29 | 0.71 | FALSE |
129 | PL2 | NA | gene expression | ENSRNOG00000047632 | 0.06 | 0.00 | blup | 1478 | 0.02 | 3.9e-02 | 5.2 | -5.3 | 9.4e-08 | -0.64 | 0.30 | 0.60 | FALSE |
130 | PL2 | Stmn4 | gene expression | ENSRNOG00000053334 | 0.13 | 0.07 | lasso | 1 | 0.07 | 8.4e-05 | 5.3 | 5.2 | 2.2e-07 | -0.17 | 0.39 | 0.58 | FALSE |
131 | PL2 | Ptk2b | intron excision ratio | chr15:40414856:40481059 | 0.32 | 0.17 | top1 | 1 | 0.17 | 9.9e-10 | 5.1 | -5.1 | 2.6e-07 | -0.43 | 0.56 | 0.44 | FALSE |
132 | PL2 | Stmn4 | intron excision ratio | chr15:40553358:40553939 | 0.21 | 0.06 | blup | 2132 | 0.09 | 1.0e-05 | 5.3 | -5.4 | 8.8e-08 | -0.37 | 0.39 | 0.61 | FALSE |
133 | PL2 | Stmn4 | intron excision ratio | chr15:40554019:40554341 | 0.10 | 0.03 | top1 | 1 | 0.03 | 6.4e-03 | 5.2 | -5.2 | 1.6e-07 | -0.35 | 0.09 | 0.04 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.