Best TWAS P=1.41e-16 · Best GWAS P=6.68e-14 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Arl14ep | alternative polyA | XM_039104930.1 | 0.02 | 1673 | 0.01 | 9.3e-03 | 5.25 | 1.50e-07 | 0.2 | FALSE |
| Adipose | Caprin1 | alternative polyA | NM_001012185.2 | 0.02 | 1 | 0.01 | 8.2e-03 | -5.66 | 1.54e-08 | 0.03 | FALSE |
| Adipose | Caprin1 | alternative polyA | NM_001012185.2 | 0.02 | 1 | 0.02 | 4.3e-03 | -5.66 | 1.54e-08 | 0.03 | FALSE |
| Adipose | Elp4 | alternative polyA | XM_039105871.1 | 0.04 | 1 | 0.03 | 5.7e-04 | -6.97 | 3.21e-12 | 0.03 | FALSE |
| Adipose | Elp4 | alternative polyA | XM_039105871.1 | 0.03 | 1 | 0.03 | 8.3e-04 | -6.97 | 3.21e-12 | 0.03 | FALSE |
| Adipose | Fbxo3 | alternative polyA | NM_001109606.1 | 0.06 | 1538 | 0.06 | 3.5e-07 | -5.3 | 1.15e-07 | 0.16 | FALSE |
| Adipose | Fbxo3 | alternative polyA | XM_006234657.4 | 0.06 | 41 | 0.06 | 4.2e-07 | -5.35 | 8.58e-08 | 0.18 | FALSE |
| Adipose | Fbxo3 | alternative polyA | XM_006234657.4 | 0.02 | 18 | 0.01 | 6.4e-02 | -5.42 | 5.90e-08 | 0.31 | FALSE |
| Adipose | Tcp11l1 | alternative polyA | NM_001109202.1 | 0.12 | 1 | 0.13 | 2.0e-14 | -7.01 | 2.31e-12 | 0.23 | FALSE |
| Adipose | Tcp11l1 | alternative polyA | XM_039105674.1 | 0.02 | 6 | 0.02 | 1.4e-03 | 7.1 | 1.23e-12 | 0.41 | FALSE |
| Adipose | Tcp11l1 | alternative polyA | XM_039105675.1 | 0.1 | 1118 | 0.11 | 1.1e-12 | -6.71 | 1.91e-11 | 0.53 | FALSE |
| Adipose | Tcp11l1 | alternative polyA | XM_039105674.1 | 0.08 | 1118 | 0.09 | 2.4e-10 | 6.45 | 1.11e-10 | 0.44 | FALSE |
| Adipose | Tcp11l1 | alternative polyA | XM_039105675.1 | 0.08 | 1118 | 0.09 | 4.6e-10 | -6.43 | 1.28e-10 | 0.43 | FALSE |
| Adipose | C3h11orf91 | alternative TSS | XM_017591901.2 | 0.03 | 1502 | 0.02 | 1.4e-03 | 5.56 | 2.72e-08 | 0.29 | FALSE |
| Adipose | C3h11orf91 | alternative TSS | XM_039105441.1 | 0.03 | 1502 | 0.02 | 1.8e-03 | -5.56 | 2.78e-08 | 0.29 | FALSE |
| Adipose | C3h11orf91 | alternative TSS | XM_017591901.2 | 0.03 | 1502 | 0.03 | 2.9e-04 | 5.51 | 3.68e-08 | 0.22 | FALSE |
| Adipose | C3h11orf91 | alternative TSS | XM_039105441.1 | 0.03 | 1502 | 0.03 | 3.0e-04 | -5.49 | 3.94e-08 | 0.2 | FALSE |
| Adipose | Cd59b | alternative TSS | XM_039104370.1 | 0.14 | 1 | 0.14 | 3.0e-15 | -5.67 | 1.46e-08 | 0 | FALSE |
| Adipose | Cd59b | alternative TSS | XM_039104371.1 | 0.13 | 1 | 0.14 | 3.1e-15 | 5.67 | 1.46e-08 | 0 | FALSE |
| Adipose | Cd59b | alternative TSS | XM_039104370.1 | 0.14 | 1 | 0.14 | 4.2e-15 | -5.67 | 1.46e-08 | 0 | FALSE |
| Adipose | Cd59b | alternative TSS | XM_039104371.1 | 0.13 | 1 | 0.14 | 4.7e-15 | 5.67 | 1.46e-08 | 0 | FALSE |
| Adipose | Ldlrad3 | alternative TSS | NM_001401870.1 | 0.04 | 533 | 0.02 | 2.4e-03 | -5.53 | 3.14e-08 | 0.18 | FALSE |
| Adipose | Apip | gene expression | Apip | 0.07 | 1 | 0.06 | 9.9e-07 | 5.54 | 3.01e-08 | 0.51 | FALSE |
| Adipose | C3h11orf91 | gene expression | C3h11orf91 | 0.49 | 221 | 0.56 | 1.5e-74 | 5.43 | 5.66e-08 | 0 | FALSE |
| Adipose | Ccdc73 | gene expression | Ccdc73 | 0.07 | 1 | 0.06 | 1.1e-07 | -7.16 | 8.06e-13 | 0.32 | FALSE |
| Adipose | Cd59b | gene expression | Cd59b | 0.12 | 216 | 0.1 | 3.3e-11 | 5.37 | 7.76e-08 | 0.01 | FALSE |
| Adipose | Depdc7 | gene expression | Depdc7 | 0.02 | 1 | 0 | 1.3e-01 | 7.27 | 3.66e-13 | 0.03 | FALSE |
| Adipose | Hipk3 | gene expression | Hipk3 | 0.02 | 1252 | 0.02 | 6.5e-03 | -5.76 | 8.36e-09 | 0.31 | FALSE |
| Adipose | Lmo2 | gene expression | Lmo2 | 0.46 | 49 | 0.47 | 5.8e-59 | 5.67 | 1.43e-08 | 0.58 | FALSE |
| Adipose | LOC102552075 | gene expression | LOC102552075 | 0.04 | 1496 | 0.03 | 2.9e-04 | 5.37 | 7.74e-08 | 0.35 | FALSE |
| Adipose | LOC120101612 | gene expression | LOC120101612 | 0.05 | 1 | 0.04 | 3.6e-05 | -5.45 | 4.95e-08 | 0.07 | FALSE |
| Adipose | Mpped2 | gene expression | Mpped2 | 0.07 | 27 | 0.05 | 1.2e-06 | 7.73 | 1.05e-14 | 0.52 | TRUE |
| Adipose | Pamr1 | gene expression | Pamr1 | 0.05 | 1 | 0.04 | 8.5e-06 | 5.49 | 4.13e-08 | 0.74 | FALSE |
| Adipose | Pdhx | gene expression | Pdhx | 0.65 | 135 | 0.31 | 6.6e-35 | 5.46 | 4.64e-08 | 0.48 | FALSE |
| Adipose | Rcn1 | gene expression | Rcn1 | 0.35 | 1 | 0.31 | 6.1e-35 | -7.2 | 6.16e-13 | 0.4 | FALSE |
| Adipose | Slc1a2 | gene expression | Slc1a2 | 0.07 | 878 | 0.04 | 8.6e-06 | -5.26 | 1.41e-07 | 0.61 | FALSE |
| Adipose | Tcp11l1 | gene expression | Tcp11l1 | 0.19 | 34 | 0.24 | 7.1e-26 | -6.85 | 7.43e-12 | 0.6 | FALSE |
| Adipose | Wt1 | gene expression | Wt1 | 0.13 | 1 | 0.06 | 2.0e-07 | -7.17 | 7.69e-13 | 0.34 | FALSE |
| Adipose | Cd59b | isoform ratio | XM_039104370.1 | 0.04 | 156 | 0.03 | 1.5e-04 | -5.38 | 7.43e-08 | 0.32 | FALSE |
| Adipose | Elp4 | isoform ratio | NM_001115047.2 | 0.24 | 126 | 0.21 | 2.1e-23 | -6.96 | 3.48e-12 | 0.46 | FALSE |
| Adipose | Elp4 | isoform ratio | XM_039105869.1 | 0.29 | 1 | 0.28 | 2.5e-31 | 7.2 | 5.98e-13 | 0.42 | FALSE |
| Adipose | Elp4 | isoform ratio | XR_005501986.1 | 0.1 | 59 | 0.08 | 1.8e-09 | -7.92 | 2.29e-15 | 0.5 | FALSE |
| Adipose | Fbxo3 | isoform ratio | NM_001109606.1 | 0.06 | 1 | 0.06 | 2.4e-07 | 5.41 | 6.36e-08 | 0.11 | FALSE |
| Adipose | Fbxo3 | isoform ratio | XM_006234657.4 | 0.06 | 52 | 0.06 | 1.0e-06 | -5.38 | 7.62e-08 | 0.2 | FALSE |
| Adipose | Tcp11l1 | isoform ratio | NM_001109202.1 | 0.08 | 1118 | 0.09 | 1.1e-09 | 6.74 | 1.62e-11 | 0.56 | FALSE |
| Adipose | Tcp11l1 | isoform ratio | XM_017591977.2 | 0.02 | 1118 | 0.02 | 5.8e-03 | -6.5 | 7.78e-11 | 0.33 | FALSE |
| Adipose | Tcp11l1 | isoform ratio | XM_039105675.1 | 0.08 | 1118 | 0.07 | 9.3e-09 | -6.79 | 1.09e-11 | 0.53 | FALSE |
| Adipose | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.33 | 270 | 0.34 | 2.2e-38 | -7.66 | 1.92e-14 | 0.47 | FALSE |
| Adipose | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.33 | 238 | 0.34 | 5.6e-39 | 7.66 | 1.79e-14 | 0.47 | FALSE |
| Adipose | Cd59b | mRNA stability | Cd59b | 0.14 | 1543 | 0.2 | 2.2e-21 | 5.51 | 3.56e-08 | 0.03 | FALSE |
| Adipose | Depdc7 | mRNA stability | Depdc7 | 0.1 | 1 | 0.09 | 2.7e-10 | 6.34 | 2.28e-10 | 0 | FALSE |
| Adipose | Eif3m | mRNA stability | Eif3m | 0.02 | 196 | 0.01 | 9.3e-03 | 7.28 | 3.43e-13 | 0.3 | FALSE |
| Adipose | Elp4 | mRNA stability | Elp4 | 0.1 | 964 | 0.08 | 1.4e-09 | -7.4 | 1.35e-13 | 0.49 | FALSE |
| Adipose | Pdhx | mRNA stability | Pdhx | 0.15 | 1 | 0.09 | 2.7e-10 | -5.45 | 4.95e-08 | 0.44 | FALSE |
| Adipose | Qser1 | mRNA stability | Qser1 | 0.02 | 1179 | 0.01 | 9.8e-03 | -7 | 2.62e-12 | 0.33 | FALSE |
| Adipose | Rcn1 | mRNA stability | Rcn1 | 0.1 | 68 | 0.09 | 1.1e-09 | -7.09 | 1.30e-12 | 0.47 | FALSE |
| Adipose | Tcp11l1 | mRNA stability | Tcp11l1 | 0.06 | 1 | 0.03 | 3.1e-04 | -5.45 | 5.11e-08 | 0.03 | FALSE |
| BLA | Caprin1 | alternative polyA | XM_039105438.1 | 0.1 | 28 | 0.04 | 4.6e-03 | -5.6 | 2.13e-08 | 0.48 | FALSE |
| BLA | Caprin1 | alternative polyA | XM_039105438.1 | 0.1 | 19 | 0.04 | 3.5e-03 | -5.62 | 1.93e-08 | 0.49 | FALSE |
| BLA | Arl14ep | alternative TSS | XM_039104930.1 | 0.04 | 1673 | 0.03 | 6.5e-03 | -5.88 | 4.02e-09 | 0.34 | FALSE |
| BLA | Apip | gene expression | Apip | 0.38 | 1131 | 0.32 | 8.9e-18 | 5.39 | 7.15e-08 | 0.43 | FALSE |
| BLA | Caprin1 | gene expression | Caprin1 | 0.25 | 1 | 0.14 | 6.9e-08 | -5.66 | 1.53e-08 | 0.57 | FALSE |
| BLA | Cat | gene expression | Cat | 0.15 | 1303 | 0.1 | 8.8e-06 | -5.69 | 1.28e-08 | 0.46 | FALSE |
| BLA | Ccdc73 | gene expression | Ccdc73 | 0.24 | 1 | 0.24 | 4.3e-13 | -7.4 | 1.40e-13 | 0.75 | FALSE |
| BLA | Cd59b | gene expression | Cd59b | 0.09 | 31 | 0.06 | 4.1e-04 | 6.08 | 1.20e-09 | 0.47 | FALSE |
| BLA | Eif3m | gene expression | Eif3m | 0.11 | 1142 | 0.1 | 5.9e-06 | -7.21 | 5.48e-13 | 0.46 | FALSE |
| BLA | LOC120101608 | gene expression | LOC120101608 | 0.09 | 137 | 0.04 | 5.3e-03 | -5.28 | 1.32e-07 | 0.49 | FALSE |
| BLA | Mpped2 | gene expression | Mpped2 | 0.14 | 1744 | 0.15 | 1.2e-08 | 6.15 | 7.78e-10 | 0.31 | FALSE |
| BLA | Nat10 | gene expression | Nat10 | 0.19 | 35 | 0.18 | 9.6e-10 | -5.42 | 5.94e-08 | 0.53 | FALSE |
| BLA | Rcn1 | gene expression | Rcn1 | 0.16 | 137 | 0.16 | 9.8e-09 | -7.25 | 4.07e-13 | 0.46 | FALSE |
| BLA | Tcp11l1 | gene expression | Tcp11l1 | 0.25 | 124 | 0.59 | 2.6e-38 | -7.42 | 1.18e-13 | 0.56 | FALSE |
| BLA | Apip | isoform ratio | NM_001106492.2 | 0.12 | 1 | 0.09 | 1.8e-05 | -5.49 | 4.12e-08 | 0.14 | FALSE |
| BLA | Arl14ep | isoform ratio | XM_039104934.1 | 0.06 | 1673 | 0.07 | 9.1e-05 | 5.21 | 1.86e-07 | 0.13 | FALSE |
| BLA | Elp4 | isoform ratio | NM_001115047.2 | 0.56 | 964 | 0.5 | 1.3e-30 | 7.36 | 1.79e-13 | 0.5 | FALSE |
| BLA | Elp4 | isoform ratio | XM_039105869.1 | 0.68 | 261 | 0.51 | 3.3e-31 | 7.55 | 4.46e-14 | 0.5 | FALSE |
| BLA | Tcp11l1 | isoform ratio | XM_039105675.1 | 0.06 | 1 | 0.05 | 7.5e-04 | 7.17 | 7.33e-13 | 0.04 | FALSE |
| BLA | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.69 | 964 | 0.49 | 1.2e-29 | -7.3 | 2.94e-13 | 0.46 | FALSE |
| BLA | Apip | mRNA stability | Apip | 0.46 | 12 | 0.39 | 4.0e-22 | 5.55 | 2.88e-08 | 0.41 | FALSE |
| BLA | Elp4 | mRNA stability | Elp4 | 0.15 | 964 | 0.16 | 7.5e-09 | -7.32 | 2.46e-13 | 0.5 | FALSE |
| BLA | Nat10 | mRNA stability | Nat10 | 0.09 | 1412 | 0.09 | 2.7e-05 | -5.52 | 3.38e-08 | 0.51 | FALSE |
| Brain | Arl14ep | alternative polyA | NM_001014045.1 | 0.09 | 26 | 0.09 | 4.7e-09 | 5.23 | 1.69e-07 | 0 | TRUE |
| Brain | Caprin1 | alternative polyA | XM_039105438.1 | 0.15 | 62 | 0.2 | 4.4e-18 | 5.42 | 5.94e-08 | 0.56 | FALSE |
| Brain | Caprin1 | alternative polyA | XM_039105438.1 | 0.15 | 1435 | 0.2 | 1.4e-18 | -5.58 | 2.41e-08 | 0.56 | FALSE |
| Brain | Fbxo3 | alternative polyA | XM_006234656.4 | 0.04 | 66 | 0.04 | 6.9e-05 | 5.42 | 6.12e-08 | 0.33 | FALSE |
| Brain | Cd59b | alternative TSS | NM_012925.2 | 0.08 | 1543 | 0.1 | 9.4e-10 | 5.63 | 1.82e-08 | 0.03 | FALSE |
| Brain | Cd59b | alternative TSS | XM_039104371.1 | 0.07 | 1543 | 0.1 | 3.8e-09 | -5.63 | 1.76e-08 | 0.05 | FALSE |
| Brain | Pax6 | alternative TSS | NM_013001.2 | 0.04 | 1 | 0.03 | 3.8e-04 | 7.31 | 2.64e-13 | 0.1 | FALSE |
| Brain | Pax6 | alternative TSS | NM_013001.2 | 0.03 | 19 | 0.02 | 8.5e-03 | -7.31 | 2.64e-13 | 0.5 | FALSE |
| Brain | Abtb2 | gene expression | Abtb2 | 0.19 | 232 | 0.16 | 7.8e-15 | 5.59 | 2.32e-08 | 0.48 | FALSE |
| Brain | Caprin1 | gene expression | Caprin1 | 0.2 | 29 | 0.22 | 3.4e-20 | 5.5 | 3.79e-08 | 0.54 | FALSE |
| Brain | Cat | gene expression | Cat | 0.42 | 1 | 0.53 | 4.7e-58 | 5.68 | 1.34e-08 | 0.61 | FALSE |
| Brain | Ccdc73 | gene expression | Ccdc73 | 0.36 | 1154 | 0.25 | 5.8e-23 | 7.43 | 1.12e-13 | 0.51 | FALSE |
| Brain | Cd59b | gene expression | Cd59b | 0.1 | 335 | 0.14 | 1.5e-12 | 5.61 | 1.98e-08 | 0.03 | FALSE |
| Brain | Eif3m | gene expression | Eif3m | 0.03 | 1 | 0.02 | 2.5e-03 | 7.09 | 1.35e-12 | 0.04 | FALSE |
| Brain | Fbxo3 | gene expression | Fbxo3 | 0.07 | 1 | 0.08 | 5.6e-08 | 5.4 | 6.79e-08 | 0.11 | FALSE |
| Brain | Fjx1 | gene expression | Fjx1 | 0.06 | 1 | 0.06 | 6.1e-06 | -5.19 | 2.10e-07 | 0.82 | FALSE |
| Brain | LOC120101608 | gene expression | LOC120101608 | 0.03 | 1 | 0.02 | 6.6e-03 | -5.39 | 7.14e-08 | 0.06 | FALSE |
| Brain | Mpped2 | gene expression | Mpped2 | 0.11 | 91 | 0.13 | 5.4e-12 | -5.79 | 7.07e-09 | 0.08 | FALSE |
| Brain | Nat10 | gene expression | Nat10 | 0.11 | 1 | 0.07 | 4.9e-07 | 5.37 | 7.68e-08 | 0.23 | FALSE |
| Brain | Pax6 | gene expression | Pax6 | 0.26 | 1030 | 0.15 | 1.6e-13 | -7.21 | 5.78e-13 | 0.33 | FALSE |
| Brain | Pdhx | gene expression | Pdhx | 0.03 | 10 | 0.02 | 4.7e-03 | 5.39 | 6.87e-08 | 0.4 | FALSE |
| Brain | Rcn1 | gene expression | Rcn1 | 0.15 | 1165 | 0.21 | 2.2e-19 | 7.26 | 3.89e-13 | 0.45 | FALSE |
| Brain | Tcp11l1 | gene expression | Tcp11l1 | 0.88 | 187 | 0.71 | 9.9e-94 | -7.3 | 2.97e-13 | 0.64 | FALSE |
| Brain | Apip | isoform ratio | NM_001106492.2 | 0.03 | 1 | 0.02 | 5.8e-03 | -5.5 | 3.79e-08 | 0.04 | FALSE |
| Brain | Arl14ep | isoform ratio | NM_001014045.1 | 0.03 | 1673 | 0.04 | 7.5e-05 | -5.2 | 2.01e-07 | 0.08 | FALSE |
| Brain | C3h11orf91 | isoform ratio | XM_039105441.1 | 0.05 | 1502 | 0.06 | 1.4e-06 | 5.28 | 1.28e-07 | 0.03 | FALSE |
| Brain | Caprin1 | isoform ratio | XM_039105438.1 | 0.14 | 205 | 0.22 | 9.4e-20 | 5.62 | 1.96e-08 | 0.55 | FALSE |
| Brain | Cd59b | isoform ratio | XM_039104370.1 | 0.03 | 1 | 0.02 | 4.9e-03 | -5.39 | 7.06e-08 | 0.03 | FALSE |
| Brain | Elp4 | isoform ratio | NM_001115047.2 | 0.49 | 67 | 0.59 | 6.4e-67 | 7.05 | 1.82e-12 | 0.44 | FALSE |
| Brain | Elp4 | isoform ratio | XM_039105869.1 | 0.49 | 964 | 0.6 | 5.6e-69 | -7.23 | 5.01e-13 | 0.46 | FALSE |
| Brain | LOC100362814 | isoform ratio | NM_001419547.1 | 0.14 | 123 | 0.13 | 2.3e-12 | 6.27 | 3.50e-10 | 0.34 | TRUE |
| Brain | LOC100362814 | isoform ratio | XM_017592182.2 | 0.05 | 76 | 0.05 | 1.2e-05 | 6.02 | 1.71e-09 | 0.34 | FALSE |
| Brain | LOC100362814 | isoform ratio | XM_039106456.1 | 0.06 | 1 | 0.08 | 4.3e-08 | -5.43 | 5.69e-08 | 0 | FALSE |
| Brain | Tcp11l1 | isoform ratio | XM_017591977.2 | 0.16 | 1118 | 0.05 | 3.3e-05 | 7.4 | 1.40e-13 | 0.61 | FALSE |
| Brain | Tcp11l1 | isoform ratio | XM_039105675.1 | 0.09 | 1118 | 0.05 | 8.7e-06 | -7.42 | 1.13e-13 | 0.62 | FALSE |
| Brain | Depdc7 | intron excision ratio | chr3_91101172_91101314 | 0.02 | 1 | -0 | 3.4e-01 | -6.44 | 1.17e-10 | 0.03 | FALSE |
| Brain | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.45 | 964 | 0.59 | 1.6e-68 | 7.21 | 5.77e-13 | 0.45 | FALSE |
| Brain | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.45 | 964 | 0.6 | 1.5e-68 | -7.21 | 5.66e-13 | 0.45 | FALSE |
| Brain | Fbxo3 | intron excision ratio | chr3_90442358_90447195 | 0.03 | 1538 | 0.02 | 3.6e-03 | -5.41 | 6.24e-08 | 0.18 | FALSE |
| Brain | LOC102549184 | intron excision ratio | chr3_90192793_90199034 | 0.02 | 1 | 0.02 | 2.7e-03 | -5.47 | 4.40e-08 | 0.03 | FALSE |
| Brain | LOC102549184 | intron excision ratio | chr3_90196706_90199034 | 0.02 | 1433 | 0.03 | 1.5e-03 | -5.37 | 7.85e-08 | 0.3 | FALSE |
| Brain | Apip | mRNA stability | Apip | 0.27 | 72 | 0.34 | 2.6e-32 | -5.31 | 1.09e-07 | 0.45 | FALSE |
| Brain | Caprin1 | mRNA stability | Caprin1 | 0.1 | 1 | 0.1 | 2.4e-09 | -5.5 | 3.79e-08 | 0.4 | FALSE |
| Brain | Cat | mRNA stability | Cat | 0.08 | 1 | 0.08 | 3.3e-08 | -5.48 | 4.26e-08 | 0.34 | FALSE |
| Brain | Cstf3 | mRNA stability | Cstf3 | 0.11 | 18 | 0.12 | 5.1e-11 | 6.87 | 6.38e-12 | 0.67 | FALSE |
| Brain | Elp4 | mRNA stability | Elp4 | 0.19 | 1 | 0.29 | 2.9e-27 | 7.13 | 9.82e-13 | 0.3 | FALSE |
| Brain | Hipk3 | mRNA stability | Hipk3 | 0.03 | 1 | 0.02 | 4.4e-03 | -5.58 | 2.38e-08 | 0.03 | FALSE |
| Brain | LOC100362814 | mRNA stability | LOC100362814 | 0.06 | 41 | 0.07 | 9.6e-07 | -6.25 | 4.11e-10 | 0.44 | FALSE |
| Brain | Nat10 | mRNA stability | Nat10 | 0.21 | 58 | 0.26 | 2.3e-24 | -5.64 | 1.68e-08 | 0.56 | FALSE |
| Brain | Pax6 | mRNA stability | Pax6 | 0.03 | 1030 | 0.03 | 5.9e-04 | -7.43 | 1.05e-13 | 0.46 | FALSE |
| Brain | Pdhx | mRNA stability | Pdhx | 0.04 | 1131 | 0.04 | 3.3e-04 | 5.27 | 1.38e-07 | 0.31 | FALSE |
| Brain | Rcn1 | mRNA stability | Rcn1 | 0.04 | 16 | 0.06 | 6.6e-06 | -7.32 | 2.43e-13 | 0.46 | FALSE |
| Eye | Arl14ep | alternative polyA | XM_039104930.1 | 0.69 | 1673 | 0.17 | 1.2e-03 | -5.73 | 1.00e-08 | 0.25 | FALSE |
| Eye | Elp4 | isoform ratio | NM_001115047.2 | 0.58 | 1 | 0.09 | 1.7e-02 | -6.8 | 1.06e-11 | 0.06 | FALSE |
| Eye | Elp4 | isoform ratio | XM_039105869.1 | 0.63 | 1 | 0.16 | 1.7e-03 | 6.8 | 1.06e-11 | 0.06 | FALSE |
| Eye | C3h11orf91 | intron excision ratio | chr3_90482837_90486337 | 0.48 | 1 | 0.26 | 6.3e-05 | 5.4 | 6.83e-08 | 0.06 | FALSE |
| Eye | C3h11orf91 | intron excision ratio | chr3_90485168_90486337 | 0.42 | 14 | 0.23 | 1.7e-04 | 5.68 | 1.34e-08 | 0.08 | FALSE |
| Eye | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.62 | 24 | 0.09 | 1.7e-02 | 6.76 | 1.39e-11 | 0.29 | FALSE |
| Eye | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.63 | 24 | 0.08 | 2.6e-02 | -6.66 | 2.65e-11 | 0.28 | FALSE |
| Eye | Pax6 | intron excision ratio | chr3_92140135_92143652 | 0.68 | 1 | 0.19 | 8.2e-04 | -7.15 | 8.45e-13 | 0.06 | FALSE |
| Eye | Dcdc1-ps1 | mRNA stability | Dcdc1-ps1 | 0.4 | 1 | 0.04 | 7.4e-02 | 7.43 | 1.10e-13 | 0.06 | FALSE |
| Eye | Elp4 | mRNA stability | Elp4 | 0.46 | 964 | 0.18 | 1.1e-03 | -7.17 | 7.25e-13 | 0.31 | FALSE |
| IL | Apip | gene expression | Apip | 0.44 | 1 | 0.37 | 9.4e-10 | -5.37 | 8.04e-08 | 0.28 | FALSE |
| IL | Ccdc73 | gene expression | Ccdc73 | 0.39 | 1154 | 0.35 | 3.0e-09 | 7.21 | 5.70e-13 | 0.51 | FALSE |
| IL | LOC108350427 | gene expression | LOC108350427 | 0.15 | 1 | 0.11 | 1.1e-03 | 7.17 | 7.68e-13 | 0.05 | FALSE |
| IL | Tcp11l1 | gene expression | Tcp11l1 | 0.55 | 1118 | 0.29 | 8.4e-08 | 7.5 | 6.44e-14 | 0.63 | FALSE |
| IL | Elp4 | isoform ratio | NM_001115047.2 | 0.39 | 964 | 0.32 | 1.5e-08 | 7.3 | 2.82e-13 | 0.49 | FALSE |
| IL | Elp4 | isoform ratio | XM_039105869.1 | 0.37 | 964 | 0.31 | 3.6e-08 | -7.29 | 3.20e-13 | 0.49 | FALSE |
| IL | Fbxo3 | isoform ratio | XM_006234657.4 | 0.11 | 1 | 0.06 | 1.6e-02 | -5.81 | 6.41e-09 | 0.05 | FALSE |
| IL | Apip | intron excision ratio | chr3_89432141_89449197 | 0.15 | 1 | 0.11 | 1.7e-03 | -5.37 | 8.04e-08 | 0.05 | FALSE |
| IL | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.48 | 213 | 0.4 | 1.2e-10 | -7.57 | 3.71e-14 | 0.48 | FALSE |
| IL | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.49 | 1 | 0.39 | 2.8e-10 | 6.87 | 6.60e-12 | 0.06 | FALSE |
| IL | Apip | mRNA stability | Apip | 0.55 | 1131 | 0.42 | 2.7e-11 | 5.47 | 4.47e-08 | 0.46 | FALSE |
| IL | Cat | mRNA stability | Cat | 0.12 | 1 | 0.07 | 8.8e-03 | -5.55 | 2.87e-08 | 0.05 | FALSE |
| IL | Elp4 | mRNA stability | Elp4 | 0.3 | 964 | 0.23 | 2.4e-06 | -7.42 | 1.14e-13 | 0.49 | FALSE |
| IL | Nat10 | mRNA stability | Nat10 | 0.3 | 1 | 0.24 | 1.7e-06 | 5.34 | 9.54e-08 | 0.07 | FALSE |
| IL | Pdhx | mRNA stability | Pdhx | 0.12 | 1 | 0.03 | 5.5e-02 | -5.38 | 7.55e-08 | 0.05 | FALSE |
| LHb | Fbxo3 | alternative polyA | NM_001109606.1 | 0.22 | 28 | 0.15 | 2.0e-04 | 5.77 | 7.82e-09 | 0.39 | FALSE |
| LHb | Fbxo3 | alternative polyA | XM_006234657.4 | 0.28 | 1538 | 0.16 | 1.1e-04 | 5.28 | 1.31e-07 | 0.32 | FALSE |
| LHb | Abtb2 | gene expression | Abtb2 | 0.13 | 1236 | 0.07 | 8.3e-03 | -5.55 | 2.92e-08 | 0.34 | FALSE |
| LHb | Apip | gene expression | Apip | 0.19 | 1 | 0.11 | 1.8e-03 | -5.37 | 8.04e-08 | 0.05 | FALSE |
| LHb | Cat | gene expression | Cat | 0.44 | 1303 | 0.33 | 1.3e-08 | -5.6 | 2.13e-08 | 0.47 | FALSE |
| LHb | Ccdc73 | gene expression | Ccdc73 | 0.18 | 1 | 0.1 | 2.2e-03 | -7.08 | 1.40e-12 | 0.05 | FALSE |
| LHb | Elf5 | gene expression | Elf5 | 0.34 | 4 | 0.21 | 1.2e-05 | -6.15 | 7.85e-10 | 0.46 | FALSE |
| LHb | LOC120101608 | gene expression | LOC120101608 | 0.14 | 1002 | 0.07 | 9.2e-03 | 5.29 | 1.25e-07 | 0.33 | FALSE |
| LHb | Rcn1 | gene expression | Rcn1 | 0.22 | 1165 | 0.13 | 4.4e-04 | 7.28 | 3.35e-13 | 0.43 | FALSE |
| LHb | Tcp11l1 | gene expression | Tcp11l1 | 0.46 | 10 | 0.22 | 5.6e-06 | 7.38 | 1.61e-13 | 0.6 | FALSE |
| LHb | Elp4 | isoform ratio | NM_001115047.2 | 0.42 | 1 | 0.33 | 1.4e-08 | -7.11 | 1.18e-12 | 0.17 | FALSE |
| LHb | Elp4 | isoform ratio | XM_039105869.1 | 0.47 | 1 | 0.36 | 1.8e-09 | 6.8 | 1.06e-11 | 0.04 | FALSE |
| LHb | Fbxo3 | isoform ratio | NM_001109606.1 | 0.18 | 1 | 0.13 | 6.5e-04 | 5.6 | 2.12e-08 | 0.05 | FALSE |
| LHb | Fbxo3 | isoform ratio | XM_006234657.4 | 0.26 | 1538 | 0.17 | 9.3e-05 | 5.27 | 1.35e-07 | 0.3 | FALSE |
| LHb | Arl14ep | intron excision ratio | chr3_93445264_93447476 | 0.16 | 1 | 0.07 | 8.3e-03 | 7.29 | 3.08e-13 | 0.05 | FALSE |
| LHb | Arl14ep | intron excision ratio | chr3_93447603_93449454 | 0.15 | 1 | 0.07 | 1.1e-02 | -6.62 | 3.60e-11 | 0.05 | FALSE |
| LHb | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.43 | 1 | 0.36 | 2.6e-09 | -7.11 | 1.18e-12 | 0.18 | FALSE |
| LHb | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.44 | 1 | 0.36 | 2.5e-09 | 7.11 | 1.18e-12 | 0.18 | FALSE |
| LHb | Fbxo3 | intron excision ratio | chr3_90442358_90443796 | 0.18 | 16 | 0.15 | 2.5e-04 | -5.62 | 1.89e-08 | 0.32 | FALSE |
| LHb | Apip | mRNA stability | Apip | 0.35 | 1131 | 0.25 | 1.3e-06 | 5.35 | 8.71e-08 | 0.4 | FALSE |
| LHb | Elp4 | mRNA stability | Elp4 | 0.21 | 1 | 0.19 | 2.8e-05 | 7.11 | 1.18e-12 | 0.06 | FALSE |
| Liver | Caprin1 | alternative polyA | XM_039105438.1 | 0.02 | 1435 | 0.02 | 4.9e-03 | 5.43 | 5.75e-08 | 0.33 | FALSE |
| Liver | Caprin1 | alternative polyA | XM_039105438.1 | 0.03 | 1435 | 0.02 | 3.0e-03 | 5.41 | 6.27e-08 | 0.36 | FALSE |
| Liver | Fbxo3 | alternative polyA | NM_001109606.1 | 0.11 | 108 | 0.12 | 2.8e-13 | 5.62 | 1.89e-08 | 0.28 | FALSE |
| Liver | Fbxo3 | alternative polyA | XM_006234656.4 | 0.04 | 8 | 0.04 | 9.0e-05 | -5.4 | 6.67e-08 | 0.25 | FALSE |
| Liver | Fbxo3 | alternative polyA | XM_006234657.4 | 0.15 | 43 | 0.11 | 5.6e-12 | -5.51 | 3.67e-08 | 0.41 | FALSE |
| Liver | Fbxo3 | alternative polyA | XM_006234657.4 | 0.02 | 1 | 0.01 | 2.8e-02 | -5.35 | 8.97e-08 | 0.03 | FALSE |
| Liver | Slc1a2 | alternative polyA | NM_001035233.2 | 0.02 | 1 | 0.01 | 7.5e-03 | -5.46 | 4.78e-08 | 0.04 | FALSE |
| Liver | Slc1a2 | alternative polyA | NM_017215.3 | 0.02 | 1 | 0.01 | 8.4e-03 | 5.46 | 4.78e-08 | 0.04 | FALSE |
| Liver | Caprin1 | alternative TSS | XM_039105440.1 | 0.04 | 1 | 0.01 | 1.0e-02 | -5.67 | 1.46e-08 | 0.03 | FALSE |
| Liver | Caprin1 | alternative TSS | XM_039105440.1 | 0.03 | 1 | 0.01 | 1.2e-02 | -5.67 | 1.46e-08 | 0.03 | FALSE |
| Liver | Cd59b | alternative TSS | XM_039104370.1 | 0.04 | 1 | 0.04 | 8.8e-05 | 5.4 | 6.54e-08 | 0.02 | FALSE |
| Liver | Abtb2 | gene expression | Abtb2 | 0.2 | 1236 | 0.19 | 1.4e-20 | 5.51 | 3.62e-08 | 0.46 | FALSE |
| Liver | Caprin1 | gene expression | Caprin1 | 0.28 | 1 | 0.23 | 7.2e-25 | -5.32 | 1.02e-07 | 0.2 | FALSE |
| Liver | Cat | gene expression | Cat | 0.04 | 1 | 0.03 | 2.3e-04 | 5.51 | 3.62e-08 | 0.06 | FALSE |
| Liver | Cd44 | gene expression | Cd44 | 0.03 | 39 | 0.01 | 7.8e-03 | 5.53 | 3.25e-08 | 0.45 | TRUE |
| Liver | Cd59b | gene expression | Cd59b | 0.03 | 1543 | 0.02 | 2.6e-03 | -5.47 | 4.57e-08 | 0.18 | FALSE |
| Liver | Eif3m | gene expression | Eif3m | 0.04 | 363 | 0.03 | 4.1e-04 | 7.3 | 2.85e-13 | 0.46 | FALSE |
| Liver | Elp4 | gene expression | Elp4 | 0.12 | 964 | 0.09 | 5.7e-10 | -7.47 | 8.29e-14 | 0.52 | FALSE |
| Liver | Lmo2 | gene expression | Lmo2 | 0.12 | 1 | 0.14 | 3.9e-15 | -5.66 | 1.54e-08 | 0.65 | FALSE |
| Liver | LOC102549184 | gene expression | LOC102549184 | 0.13 | 4 | 0.13 | 1.6e-14 | 5.21 | 1.86e-07 | 0.41 | FALSE |
| Liver | LOC120101609 | gene expression | LOC120101609 | 0.24 | 458 | 0.22 | 2.2e-24 | -5.43 | 5.70e-08 | 0.44 | FALSE |
| Liver | LOC120101611 | gene expression | LOC120101611 | 0.22 | 358 | 0.17 | 6.0e-19 | -5.58 | 2.39e-08 | 0.52 | FALSE |
| Liver | LOC120101612 | gene expression | LOC120101612 | 0.08 | 1307 | 0.06 | 2.7e-07 | 5.42 | 5.86e-08 | 0.42 | FALSE |
| Liver | Nat10 | gene expression | Nat10 | 0.1 | 1 | 0.09 | 3.2e-10 | 5.66 | 1.54e-08 | 0.61 | FALSE |
| Liver | Prrg4 | gene expression | Prrg4 | 0.23 | 55 | 0.22 | 1.6e-24 | 7.24 | 4.34e-13 | 0.52 | FALSE |
| Liver | Rcn1 | gene expression | Rcn1 | 0.04 | 1 | 0.03 | 2.3e-04 | -7.18 | 6.95e-13 | 0.04 | FALSE |
| Liver | Tcp11l1 | gene expression | Tcp11l1 | 0.03 | 1 | 0.02 | 9.5e-04 | 5.42 | 6.00e-08 | 0.03 | FALSE |
| Liver | Them7 | gene expression | Them7 | 0.21 | 1195 | 0.17 | 5.7e-19 | 7.28 | 3.24e-13 | 0.46 | FALSE |
| Liver | Caprin1 | isoform ratio | XM_006234652.3 | 0.02 | 1 | 0.01 | 7.6e-03 | 5.69 | 1.25e-08 | 0.03 | FALSE |
| Liver | Cd59b | isoform ratio | NM_012925.2 | 0.03 | 1 | 0.01 | 1.1e-02 | -7.25 | 4.20e-13 | 0.05 | FALSE |
| Liver | Cd59b | isoform ratio | XM_039104370.1 | 0.02 | 1 | 0.01 | 4.7e-02 | 7.25 | 4.20e-13 | 0.04 | FALSE |
| Liver | Elp4 | isoform ratio | NM_001115047.2 | 0.4 | 1 | 0.26 | 2.9e-28 | -7.24 | 4.59e-13 | 0.48 | FALSE |
| Liver | Elp4 | isoform ratio | XM_039105869.1 | 0.38 | 350 | 0.31 | 7.0e-35 | 7.65 | 2.05e-14 | 0.5 | FALSE |
| Liver | Fbxo3 | isoform ratio | NM_001109606.1 | 0.14 | 1 | 0.16 | 5.0e-17 | 5.21 | 1.93e-07 | 0.04 | FALSE |
| Liver | Fbxo3 | isoform ratio | XM_006234656.4 | 0.04 | 2 | 0.04 | 5.0e-05 | 5.42 | 6.05e-08 | 0.26 | FALSE |
| Liver | Fbxo3 | isoform ratio | XM_006234657.4 | 0.12 | 1 | 0.1 | 3.5e-11 | -5.21 | 1.93e-07 | 0.04 | FALSE |
| Liver | Slc1a2 | isoform ratio | NM_001035233.2 | 0.03 | 1 | 0.01 | 1.6e-02 | -5.61 | 2.04e-08 | 0.05 | FALSE |
| Liver | Slc1a2 | isoform ratio | NM_001302089.2 | 0.03 | 1 | 0.01 | 1.3e-02 | 5.54 | 3.01e-08 | 0.04 | FALSE |
| Liver | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.46 | 964 | 0.28 | 3.5e-31 | 6.33 | 2.49e-10 | 0.5 | FALSE |
| Liver | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.46 | 964 | 0.28 | 2.8e-31 | -6.29 | 3.27e-10 | 0.5 | FALSE |
| Liver | LOC120101609 | intron excision ratio | chr3_89874519_89876700 | 0.05 | 1 | 0.04 | 2.7e-05 | 5.46 | 4.78e-08 | 0.09 | FALSE |
| Liver | Them7 | intron excision ratio | chr3_91668585_91746652 | 0.08 | 1195 | 0.06 | 1.2e-07 | 7.26 | 3.84e-13 | 0.45 | FALSE |
| Liver | Them7 | intron excision ratio | chr3_91740600_91746652 | 0.75 | 1 | 0.51 | 5.1e-65 | 7.29 | 3.09e-13 | 0.55 | FALSE |
| Liver | Them7 | intron excision ratio | chr3_91813900_91833570 | 0.1 | 1 | 0.08 | 2.9e-09 | 7.2 | 6.16e-13 | 0.39 | FALSE |
| Liver | Wt1 | intron excision ratio | chr3_91607414_91609445 | 0.02 | 1 | 0.02 | 5.8e-03 | 7.17 | 7.47e-13 | 0.03 | FALSE |
| Liver | Arl14ep | mRNA stability | Arl14ep | 0.04 | 1673 | 0.03 | 9.9e-05 | -5.88 | 4.07e-09 | 0.46 | FALSE |
| Liver | Cat | mRNA stability | Cat | 0.11 | 1303 | 0.08 | 4.7e-09 | 5.47 | 4.57e-08 | 0.41 | FALSE |
| Liver | Elp4 | mRNA stability | Elp4 | 0.26 | 97 | 0.2 | 1.2e-21 | 6.69 | 2.17e-11 | 0.52 | TRUE |
| Liver | Lmo2 | mRNA stability | Lmo2 | 0.02 | 1493 | 0.01 | 2.4e-02 | 5.44 | 5.39e-08 | 0.3 | FALSE |
| Liver | LOC120101609 | mRNA stability | LOC120101609 | 0.34 | 1303 | 0.3 | 2.1e-33 | 5.49 | 4.01e-08 | 0.44 | FALSE |
| Liver | Pdhx | mRNA stability | Pdhx | 0.03 | 1131 | 0.03 | 6.2e-04 | 5.44 | 5.22e-08 | 0.45 | FALSE |
| Liver | Them7 | mRNA stability | Them7 | 0.58 | 1195 | 0.35 | 1.3e-40 | 7.32 | 2.40e-13 | 0.47 | FALSE |
| NAcc | Caprin1 | alternative polyA | XM_039105438.1 | 0.04 | 1 | 0.04 | 3.1e-05 | 5.4 | 6.64e-08 | 0.12 | FALSE |
| NAcc | Caprin1 | alternative polyA | XM_039105438.1 | 0.04 | 1 | 0.04 | 2.6e-05 | 5.4 | 6.64e-08 | 0.13 | FALSE |
| NAcc | Cd44 | alternative polyA | NM_012924.3 | 0.02 | 1178 | 0.03 | 5.9e-04 | 5.26 | 1.47e-07 | 0.5 | FALSE |
| NAcc | Cd44 | alternative polyA | XM_008762058.3 | 0.03 | 1178 | 0.03 | 5.1e-04 | -5.28 | 1.32e-07 | 0.5 | FALSE |
| NAcc | Fbxo3 | alternative polyA | XM_006234656.4 | 0.04 | 1538 | 0.04 | 1.3e-05 | -5.36 | 8.50e-08 | 0.1 | FALSE |
| NAcc | Fbxo3 | alternative polyA | XM_006234656.4 | 0.03 | 1538 | 0.04 | 2.0e-05 | -5.41 | 6.19e-08 | 0.13 | FALSE |
| NAcc | Cd59b | alternative TSS | NM_012925.2 | 0.02 | 1543 | 0.02 | 5.5e-03 | 5.6 | 2.09e-08 | 0.34 | FALSE |
| NAcc | Cd59b | alternative TSS | XM_039104371.1 | 0.05 | 42 | 0.03 | 1.5e-04 | 5.5 | 3.72e-08 | 0.08 | FALSE |
| NAcc | Cd59b | alternative TSS | XM_039104370.1 | 0.07 | 1 | 0.02 | 1.5e-03 | -5.43 | 5.69e-08 | 0.03 | FALSE |
| NAcc | Cd59b | alternative TSS | XM_039104371.1 | 0.03 | 1543 | 0.02 | 1.5e-03 | -5.32 | 1.04e-07 | 0.16 | FALSE |
| NAcc | Caprin1 | gene expression | Caprin1 | 0.13 | 1 | 0.13 | 2.3e-15 | -5.39 | 6.97e-08 | 0.27 | FALSE |
| NAcc | Cat | gene expression | Cat | 0.1 | 1303 | 0.13 | 3.7e-15 | -5.49 | 4.06e-08 | 0.48 | FALSE |
| NAcc | Ccdc73 | gene expression | Ccdc73 | 0.17 | 1 | 0.22 | 8.5e-25 | -7.16 | 8.16e-13 | 0.35 | FALSE |
| NAcc | Eif3m | gene expression | Eif3m | 0.03 | 1142 | 0.02 | 1.7e-03 | -7.21 | 5.51e-13 | 0.42 | FALSE |
| NAcc | Fbxo3 | gene expression | Fbxo3 | 0.02 | 1538 | 0.02 | 1.2e-03 | -5.59 | 2.31e-08 | 0.23 | FALSE |
| NAcc | LOC100362814 | gene expression | LOC100362814 | 0.16 | 1344 | 0.15 | 7.8e-17 | -5.65 | 1.58e-08 | 0 | FALSE |
| NAcc | LOC120101608 | gene expression | LOC120101608 | 0.02 | 1002 | 0.02 | 6.8e-04 | 5.27 | 1.36e-07 | 0.52 | FALSE |
| NAcc | Mpped2 | gene expression | Mpped2 | 0.1 | 18 | 0.12 | 6.0e-14 | 6.25 | 4.08e-10 | 0.36 | FALSE |
| NAcc | Nat10 | gene expression | Nat10 | 0.07 | 1 | 0.07 | 3.1e-08 | 5.37 | 8.04e-08 | 0.24 | FALSE |
| NAcc | Rcn1 | gene expression | Rcn1 | 0.35 | 1165 | 0.16 | 5.7e-18 | 6.96 | 3.42e-12 | 0.45 | FALSE |
| NAcc | Tcp11l1 | gene expression | Tcp11l1 | 0.31 | 33 | 0.42 | 2.0e-52 | 7.18 | 6.88e-13 | 0.57 | FALSE |
| NAcc | Apip | isoform ratio | NM_001106492.2 | 0.03 | 1131 | 0.02 | 7.2e-04 | 5.45 | 4.91e-08 | 0.47 | FALSE |
| NAcc | Caprin1 | isoform ratio | XM_039105438.1 | 0.03 | 1 | 0.03 | 3.6e-04 | 5.4 | 6.64e-08 | 0.05 | FALSE |
| NAcc | Elp4 | isoform ratio | NM_001115047.2 | 0.26 | 23 | 0.49 | 3.5e-64 | 7.42 | 1.13e-13 | 0.32 | FALSE |
| NAcc | Elp4 | isoform ratio | XM_039105869.1 | 0.25 | 29 | 0.5 | 1.5e-66 | -7.43 | 1.11e-13 | 0.29 | FALSE |
| NAcc | Tcp11l1 | isoform ratio | XM_039105675.1 | 0.02 | 1 | 0.02 | 3.0e-03 | 7.17 | 7.33e-13 | 0.03 | FALSE |
| NAcc | Dnajc24 | intron excision ratio | chr3_92455243_92485048 | 0.02 | 1145 | 0.01 | 1.0e-02 | -7.22 | 5.34e-13 | 0.35 | FALSE |
| NAcc | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.34 | 106 | 0.54 | 6.7e-74 | -7.56 | 3.97e-14 | 0.43 | FALSE |
| NAcc | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.33 | 41 | 0.54 | 2.5e-74 | -7.53 | 5.14e-14 | 0.44 | FALSE |
| NAcc | Apip | mRNA stability | Apip | 0.27 | 72 | 0.3 | 9.5e-36 | 5.5 | 3.87e-08 | 0.35 | FALSE |
| NAcc | Cstf3 | mRNA stability | Cstf3 | 0.04 | 1 | 0.02 | 1.0e-03 | 7.24 | 4.54e-13 | 0.06 | FALSE |
| NAcc | Elp4 | mRNA stability | Elp4 | 0.13 | 964 | 0.21 | 1.2e-23 | -7.4 | 1.38e-13 | 0.47 | FALSE |
| NAcc | Immp1l | mRNA stability | Immp1l | 0.02 | 963 | 0.01 | 7.2e-03 | 7.05 | 1.75e-12 | 0.39 | FALSE |
| NAcc | Nat10 | mRNA stability | Nat10 | 0.11 | 92 | 0.11 | 3.6e-13 | 5.63 | 1.79e-08 | 0.56 | FALSE |
| NAcc | Pdhx | mRNA stability | Pdhx | 0.03 | 1 | 0.01 | 6.4e-03 | -5.33 | 9.94e-08 | 0.03 | FALSE |
| NAcc | Rcn1 | mRNA stability | Rcn1 | 0.08 | 1165 | 0.11 | 3.2e-12 | 7.35 | 1.98e-13 | 0.46 | FALSE |
| OFC | Arl14ep | alternative polyA | NM_001014045.1 | 0.31 | 1 | 0.18 | 4.0e-05 | 6.76 | 1.35e-11 | 0.05 | FALSE |
| OFC | Arl14ep | alternative polyA | XM_039104930.1 | 0.28 | 1 | 0.12 | 8.4e-04 | -6.76 | 1.35e-11 | 0.05 | FALSE |
| OFC | Fbxo3 | alternative polyA | XM_006234657.4 | 0.39 | 318 | 0.22 | 6.1e-06 | -5.36 | 8.25e-08 | 0.26 | FALSE |
| OFC | Fbxo3 | alternative polyA | XM_006234657.4 | 0.32 | 1538 | 0.17 | 9.1e-05 | 5.39 | 7.19e-08 | 0.24 | FALSE |
| OFC | Cat | gene expression | Cat | 0.16 | 1303 | 0.09 | 4.2e-03 | -5.54 | 3.06e-08 | 0.36 | FALSE |
| OFC | Ccdc73 | gene expression | Ccdc73 | 0.33 | 51 | 0.21 | 1.1e-05 | -7.3 | 2.79e-13 | 0.48 | FALSE |
| OFC | Tcp11l1 | gene expression | Tcp11l1 | 0.37 | 24 | 0.24 | 1.8e-06 | 6.75 | 1.50e-11 | 0.53 | FALSE |
| OFC | Elp4 | isoform ratio | NM_001115047.2 | 0.15 | 964 | 0.04 | 3.2e-02 | 7.31 | 2.68e-13 | 0.31 | FALSE |
| OFC | Elp4 | isoform ratio | XM_039105869.1 | 0.21 | 964 | 0.08 | 4.9e-03 | -7.26 | 3.89e-13 | 0.41 | FALSE |
| OFC | Fbxo3 | isoform ratio | NM_001109606.1 | 0.12 | 1538 | 0.07 | 1.2e-02 | -5.52 | 3.46e-08 | 0.21 | FALSE |
| OFC | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.26 | 964 | 0.14 | 3.3e-04 | 7.36 | 1.81e-13 | 0.44 | FALSE |
| OFC | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.26 | 964 | 0.14 | 3.4e-04 | -7.37 | 1.72e-13 | 0.44 | FALSE |
| OFC | Fbxo3 | intron excision ratio | chr3_90442358_90443796 | 0.31 | 14 | 0.16 | 1.5e-04 | -5.62 | 1.93e-08 | 0.3 | FALSE |
| OFC | Apip | mRNA stability | Apip | 0.44 | 12 | 0.33 | 1.6e-08 | 5.45 | 4.94e-08 | 0.38 | FALSE |
| OFC | Elp4 | mRNA stability | Elp4 | 0.24 | 5 | 0.16 | 1.1e-04 | 8.26 | 1.41e-16 | 0.48 | TRUE |
| PL | Caprin1 | alternative polyA | XM_039105438.1 | 0.1 | 1435 | 0.08 | 8.0e-09 | -5.39 | 7.16e-08 | 0.56 | FALSE |
| PL | Caprin1 | alternative polyA | XM_039105438.1 | 0.07 | 1435 | 0.07 | 5.8e-08 | -5.45 | 5.16e-08 | 0.55 | FALSE |
| PL | Fbxo3 | alternative polyA | XM_006234656.4 | 0.06 | 1 | 0.04 | 6.4e-05 | 5.43 | 5.69e-08 | 0.12 | FALSE |
| PL | Fbxo3 | alternative polyA | XM_039105888.1 | 0.03 | 1538 | 0.02 | 1.2e-03 | -5.49 | 3.96e-08 | 0.27 | FALSE |
| PL | Fbxo3 | alternative polyA | XM_039105888.1 | 0.06 | 1538 | 0.07 | 1.2e-08 | -5.48 | 4.17e-08 | 0.17 | FALSE |
| PL | Abtb2 | gene expression | Abtb2 | 0.04 | 3 | 0.05 | 3.8e-06 | 6.04 | 1.53e-09 | 0.49 | FALSE |
| PL | Apip | gene expression | Apip | 0.77 | 1 | 0.45 | 1.9e-54 | -5.49 | 4.12e-08 | 0.49 | FALSE |
| PL | Ccdc73 | gene expression | Ccdc73 | 0.24 | 430 | 0.27 | 2.6e-29 | -7.26 | 3.97e-13 | 0.49 | FALSE |
| PL | Elf5 | gene expression | Elf5 | 0.04 | 1 | 0.03 | 2.1e-04 | 5.69 | 1.28e-08 | 0.12 | FALSE |
| PL | Elp4 | gene expression | Elp4 | 0.03 | 964 | 0.04 | 1.6e-05 | -7.47 | 8.14e-14 | 0.49 | FALSE |
| PL | Fbxo3 | gene expression | Fbxo3 | 0.1 | 39 | 0.1 | 4.4e-11 | 5.3 | 1.18e-07 | 0.09 | FALSE |
| PL | Mpped2 | gene expression | Mpped2 | 0.1 | 1 | 0.08 | 5.1e-09 | -7.03 | 2.04e-12 | 0.14 | FALSE |
| PL | Tcp11l1 | gene expression | Tcp11l1 | 0.25 | 367 | 0.45 | 5.0e-55 | -6.85 | 7.59e-12 | 0.56 | FALSE |
| PL | Apip | isoform ratio | NM_001106492.2 | 0.03 | 1131 | 0.02 | 2.3e-03 | 5.38 | 7.31e-08 | 0.39 | FALSE |
| PL | Caprin1 | isoform ratio | NM_001012185.2 | 0.02 | 1435 | 0.02 | 1.5e-03 | 5.47 | 4.42e-08 | 0.35 | FALSE |
| PL | Caprin1 | isoform ratio | XM_039105438.1 | 0.08 | 1435 | 0.07 | 5.5e-08 | -5.43 | 5.58e-08 | 0.54 | FALSE |
| PL | Elp4 | isoform ratio | NM_001115047.2 | 0.34 | 66 | 0.54 | 3.5e-71 | 6.99 | 2.67e-12 | 0.23 | FALSE |
| PL | Elp4 | isoform ratio | XM_039105869.1 | 0.35 | 60 | 0.56 | 3.1e-75 | -7.06 | 1.64e-12 | 0.23 | FALSE |
| PL | Fbxo3 | isoform ratio | XM_006234656.4 | 0.05 | 111 | 0.04 | 3.1e-05 | 5.3 | 1.18e-07 | 0.2 | FALSE |
| PL | Fbxo3 | isoform ratio | XM_006234657.4 | 0.14 | 53 | 0.21 | 4.1e-23 | -5.25 | 1.52e-07 | 0.03 | FALSE |
| PL | LOC100362814 | isoform ratio | NM_001419547.1 | 0.03 | 1 | 0.02 | 5.2e-03 | 5.46 | 4.86e-08 | 0.03 | FALSE |
| PL | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.32 | 43 | 0.54 | 3.7e-71 | 7 | 2.50e-12 | 0.25 | FALSE |
| PL | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.32 | 44 | 0.55 | 2.6e-71 | -7.02 | 2.29e-12 | 0.24 | FALSE |
| PL | Caprin1 | mRNA stability | Caprin1 | 0.04 | 1 | 0.02 | 4.8e-03 | -5.52 | 3.33e-08 | 0.04 | FALSE |
| PL | Cat | mRNA stability | Cat | 0.05 | 1303 | 0.05 | 7.3e-06 | 5.56 | 2.68e-08 | 0.48 | FALSE |
| PL | Cd59b | mRNA stability | Cd59b | 0.04 | 1543 | 0.04 | 4.9e-05 | 5.22 | 1.75e-07 | 0.03 | FALSE |
| PL | Elp4 | mRNA stability | Elp4 | 0.45 | 1 | 0.37 | 2.7e-42 | 6.87 | 6.60e-12 | 0.06 | FALSE |
| PL | Nat10 | mRNA stability | Nat10 | 0.24 | 27 | 0.12 | 1.7e-13 | -5.6 | 2.11e-08 | 0.56 | FALSE |
| PL | Pdhx | mRNA stability | Pdhx | 0.17 | 1131 | 0.14 | 1.9e-15 | 5.54 | 2.95e-08 | 0.58 | FALSE |
| pVTA | Arl14ep | alternative polyA | XM_039104930.1 | 0.08 | 1673 | 0.05 | 4.1e-03 | 6.39 | 1.61e-10 | 0.5 | FALSE |
| pVTA | Arl14ep | alternative polyA | NM_001014045.1 | 0.31 | 1673 | 0.07 | 6.0e-04 | -6.54 | 6.18e-11 | 0.57 | FALSE |
| pVTA | Arl14ep | alternative polyA | XM_039104930.1 | 0.24 | 28 | 0.07 | 8.1e-04 | 6.7 | 2.05e-11 | 0.53 | FALSE |
| pVTA | Fbxo3 | alternative polyA | NM_001109606.1 | 0.15 | 1 | 0.17 | 5.7e-08 | 5.3 | 1.19e-07 | 0.06 | FALSE |
| pVTA | Fbxo3 | alternative polyA | XM_006234657.4 | 0.2 | 39 | 0.2 | 3.5e-09 | 5.34 | 9.42e-08 | 0.14 | FALSE |
| pVTA | Fbxo3 | alternative polyA | XM_039105888.1 | 0.05 | 1 | 0.06 | 1.6e-03 | 5.37 | 7.66e-08 | 0.04 | FALSE |
| pVTA | Fbxo3 | alternative polyA | XM_006234657.4 | 0.05 | 11 | 0.05 | 2.8e-03 | -5.44 | 5.29e-08 | 0.2 | FALSE |
| pVTA | Fbxo3 | alternative polyA | XM_039105888.1 | 0.08 | 1 | 0.11 | 2.0e-05 | 5.37 | 7.66e-08 | 0.05 | FALSE |
| pVTA | Cd59b | alternative TSS | NM_012925.2 | 0.31 | 1 | 0.11 | 2.5e-05 | -5.37 | 7.92e-08 | 0.04 | FALSE |
| pVTA | Hipk3 | alternative TSS | NM_031787.2 | 0.05 | 1 | 0.04 | 1.2e-02 | 5.37 | 8.00e-08 | 0.04 | FALSE |
| pVTA | Hipk3 | alternative TSS | NM_031787.2 | 0.05 | 1 | 0.04 | 7.2e-03 | 5.37 | 8.00e-08 | 0.04 | FALSE |
| pVTA | Abtb2 | gene expression | Abtb2 | 0.31 | 1236 | 0.25 | 2.7e-11 | -5.64 | 1.74e-08 | 0.52 | FALSE |
| pVTA | Apip | gene expression | Apip | 0.24 | 1 | 0.15 | 5.0e-07 | -5.42 | 6.10e-08 | 0.27 | FALSE |
| pVTA | Arl14ep | gene expression | Arl14ep | 0.06 | 1673 | 0.07 | 6.0e-04 | 5.28 | 1.30e-07 | 0.15 | FALSE |
| pVTA | Cat | gene expression | Cat | 0.49 | 1303 | 0.56 | 7.8e-29 | -5.39 | 7.23e-08 | 0.51 | FALSE |
| pVTA | Ccdc73 | gene expression | Ccdc73 | 0.76 | 1154 | 0.13 | 2.3e-06 | 7.18 | 6.78e-13 | 0.49 | FALSE |
| pVTA | Depdc7 | gene expression | Depdc7 | 0.06 | 1123 | 0.04 | 6.2e-03 | -7.02 | 2.15e-12 | 0.45 | FALSE |
| pVTA | Eif3m | gene expression | Eif3m | 0.06 | 1 | 0.04 | 8.9e-03 | 7.24 | 4.54e-13 | 0.04 | FALSE |
| pVTA | Mpped2 | gene expression | Mpped2 | 0.17 | 385 | 0.13 | 2.4e-06 | -6.18 | 6.21e-10 | 0.3 | FALSE |
| pVTA | Rcn1 | gene expression | Rcn1 | 0.27 | 1 | 0.38 | 2.7e-17 | -7.33 | 2.25e-13 | 0.64 | FALSE |
| pVTA | Tcp11l1 | gene expression | Tcp11l1 | 0.13 | 11 | 0.16 | 2.9e-07 | 5.74 | 9.40e-09 | 0.3 | FALSE |
| pVTA | Them7 | gene expression | Them7 | 0.09 | 1195 | 0.09 | 9.7e-05 | 7.25 | 4.19e-13 | 0.42 | FALSE |
| pVTA | Elp4 | isoform ratio | NM_001115047.2 | 0.63 | 133 | 0.53 | 2.5e-26 | -7.54 | 4.82e-14 | 0.21 | FALSE |
| pVTA | Elp4 | isoform ratio | XM_039105869.1 | 0.58 | 139 | 0.53 | 8.1e-27 | 7.51 | 6.07e-14 | 0.2 | FALSE |
| pVTA | Fbxo3 | isoform ratio | NM_001109606.1 | 0.24 | 1 | 0.14 | 1.6e-06 | 5.3 | 1.19e-07 | 0.05 | FALSE |
| pVTA | Fbxo3 | isoform ratio | XM_006234657.4 | 0.23 | 1 | 0.15 | 7.6e-07 | -5.37 | 8.00e-08 | 0.06 | FALSE |
| pVTA | Prrg4 | isoform ratio | XM_006234655.3 | 0.06 | 1 | 0.05 | 2.3e-03 | 5.55 | 2.86e-08 | 0.04 | FALSE |
| pVTA | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.58 | 37 | 0.55 | 3.6e-28 | 7.41 | 1.22e-13 | 0.29 | FALSE |
| pVTA | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.59 | 24 | 0.55 | 8.7e-28 | -7.37 | 1.71e-13 | 0.3 | FALSE |
| pVTA | Fbxo3 | intron excision ratio | chr3_90442358_90443392 | 0.14 | 1 | 0.09 | 7.3e-05 | -5.75 | 9.12e-09 | 0.13 | FALSE |
| pVTA | Elp4 | mRNA stability | Elp4 | 0.19 | 15 | 0.11 | 2.4e-05 | 6.61 | 3.87e-11 | 0.36 | FALSE |
| pVTA | Pdhx | mRNA stability | Pdhx | 0.09 | 1 | 0.05 | 3.1e-03 | -5.41 | 6.39e-08 | 0.04 | FALSE |
| RMTg | Apip | gene expression | Apip | 0.28 | 1 | 0.19 | 8.6e-06 | -5.73 | 1.02e-08 | 0.23 | FALSE |
| RMTg | Cat | gene expression | Cat | 0.24 | 1 | 0.17 | 2.8e-05 | 5.5 | 3.79e-08 | 0.06 | FALSE |
| RMTg | Cd59b | gene expression | Cd59b | 0.19 | 1 | 0.16 | 3.6e-05 | 5.75 | 9.12e-09 | 0.05 | FALSE |
| RMTg | Them7 | gene expression | Them7 | 0.27 | 360 | 0.06 | 1.3e-02 | -6.76 | 1.38e-11 | 0.34 | TRUE |
| RMTg | Elp4 | isoform ratio | NM_001115047.2 | 0.21 | 1 | 0.15 | 1.0e-04 | -6.9 | 5.36e-12 | 0.05 | FALSE |
| RMTg | Elp4 | isoform ratio | XM_039105869.1 | 0.11 | 10 | 0.1 | 1.6e-03 | -7.79 | 6.49e-15 | 0.3 | FALSE |
| RMTg | Elp4 | intron excision ratio | chr3_92302780_92314624 | 0.4 | 14 | 0.11 | 6.4e-04 | 6.85 | 7.15e-12 | 0.34 | TRUE |
| RMTg | Elp4 | intron excision ratio | chr3_92302783_92314624 | 0.4 | 15 | 0.13 | 2.9e-04 | -6.88 | 5.78e-12 | 0.36 | FALSE |
| RMTg | Fbxo3 | intron excision ratio | chr3_90442358_90443392 | 0.17 | 1538 | 0.14 | 1.8e-04 | 5.4 | 6.81e-08 | 0.31 | FALSE |
| RMTg | Tcp11l1 | mRNA stability | Tcp11l1 | 0.08 | 1 | 0.07 | 7.5e-03 | 6.78 | 1.20e-11 | 0.05 | FALSE |