Hub : Traits : Length with tail : ← →

chr7:26,575,816-30,904,027

Trait: Length with tail

Best TWAS P=4.485013e-23 · Best GWAS P=5.049657e-25 conditioned to NaN

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Elk3	gene expression	ENSRNOG00000004367	0.11	0.05	blup	2579	0.05	2.5e-06	-7.291	7.5	5.6e-14	-0.50	0.72	0.28	FALSE
2	Adipose	Hal	gene expression	ENSRNOG00000004502	0.03	0.00	blup	2432	0.01	6.9e-02	-8.254	-7.8	4.6e-15	0.56	0.30	0.33	TRUE
3	Adipose	Vezt	gene expression	ENSRNOG00000006514	0.11	0.08	top1	1	0.08	3.2e-09	-6.972	-7.0	3.1e-12	0.57	1.00	0.00	FALSE
4	Adipose	Ndufa12	gene expression	ENSRNOG00000007407	0.34	0.19	lasso	16	0.20	1.0e-21	-6.952	-7.1	1.4e-12	0.49	1.00	0.00	FALSE
5	Adipose	Cep83	intron excision ratio	chr7:29322957:29325469	0.03	0.01	blup	2703	0.02	1.8e-03	-7.058	-7.6	4.3e-14	0.52	0.54	0.34	FALSE
6	Adipose	Nedd1	mRNA stability	ENSRNOG00000004011	0.07	0.05	blup	2860	0.05	1.4e-06	-5.891	-5.2	1.7e-07	0.34	0.52	0.48	FALSE
7	Adipose	Vezt	mRNA stability	ENSRNOG00000006514	0.07	0.04	blup	2570	0.06	5.0e-07	-7.886	-8.2	1.6e-16	0.60	0.72	0.28	FALSE
8	BLA	AABR07056633.1	alternative polyA	ENSRNOT00000104436	0.08	0.02	blup	2953	0.02	2.7e-02	-4.756	-6.9	4.5e-12	0.26	0.56	0.06	FALSE
9	BLA	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.19	0.12	lasso	27	0.12	3.4e-07	-5.771	5.2	1.8e-07	-0.31	1.00	0.00	FALSE
10	BLA	Cdk17	gene expression	ENSRNOG00000004148	0.11	0.01	enet	7	0.05	7.6e-04	-8.288	-5.6	1.7e-08	0.18	0.35	0.46	FALSE
11	BLA	Ntn4	gene expression	ENSRNOG00000005573	0.06	0.02	blup	2475	0.03	8.1e-03	-0.056	6.9	6.6e-12	-0.59	0.43	0.37	FALSE
12	BLA	Vezt	gene expression	ENSRNOG00000006514	0.32	0.25	enet	97	0.30	1.1e-16	-7.384	-7.5	7.8e-14	0.57	0.43	0.57	FALSE
13	BLA	Plxnc1	gene expression	ENSRNOG00000007970	0.17	0.06	blup	3125	0.11	2.6e-06	-4.948	-6.3	3.9e-10	0.43	0.99	0.01	FALSE
14	BLA	Nudt4	gene expression	ENSRNOG00000009094	0.46	0.35	lasso	64	0.38	1.9e-21	5.874	6.9	5.6e-12	-0.31	1.00	0.00	FALSE
15	BLA	Metap2	gene expression	ENSRNOG00000021881	0.08	0.07	top1	1	0.07	1.9e-04	-8.508	8.5	1.8e-17	-0.67	0.07	0.30	FALSE
16	BLA	Mir331	gene expression	ENSRNOG00000035543	0.06	0.04	blup	2366	0.06	5.1e-04	-7.091	8.6	1.1e-17	-0.64	0.62	0.35	FALSE
17	BLA	Fgd6	gene expression	ENSRNOG00000054515	0.11	0.13	top1	1	0.13	2.7e-07	-7.741	-7.7	9.8e-15	0.67	0.84	0.09	FALSE
18	BLA	Tmcc3	isoform ratio	ENSRNOT00000102476	0.10	0.02	blup	2424	0.04	3.2e-03	-7.155	-7.9	3.3e-15	0.57	0.46	0.42	TRUE
19	BLA	Socs2	isoform ratio	ENSRNOT00000011948	0.06	0.05	top1	1	0.05	1.2e-03	5.627	5.6	1.8e-08	-0.27	0.14	0.04	FALSE
20	BLA	Socs2	isoform ratio	ENSRNOT00000103867	0.06	0.04	top1	1	0.04	4.9e-03	5.627	-5.6	1.8e-08	0.28	0.14	0.04	FALSE
21	BLA	AABR07056633.1	isoform ratio	ENSRNOT00000114083	0.18	0.06	top1	1	0.06	6.5e-04	-6.182	-6.2	6.3e-10	0.45	0.14	0.04	FALSE
22	BLA	Lta4h	intron excision ratio	chr7:27997602:27999743	0.07	0.01	blup	2332	0.02	2.6e-02	-5.800	-7.2	6.1e-13	0.51	0.58	0.30	FALSE
23	BLA	Vezt	intron excision ratio	chr7:28557619:28560958	0.07	0.01	blup	2571	0.01	6.6e-02	3.015	7.2	5.8e-13	-0.50	0.50	0.20	FALSE
24	BLA	Tmcc3	intron excision ratio	chr7:29100427:29159418	0.12	0.10	lasso	10	0.11	1.0e-06	-4.527	6.6	3.3e-11	-0.45	0.72	0.26	FALSE
25	BLA	Tmcc3	intron excision ratio	chr7:29133627:29159418	0.07	0.02	blup	2424	0.04	4.3e-03	-7.498	-7.7	1.7e-14	0.60	0.41	0.41	FALSE
26	BLA	Vezt	mRNA stability	ENSRNOG00000006514	0.40	0.42	top1	1	0.42	4.0e-24	-7.949	7.9	1.9e-15	-0.66	0.65	0.35	FALSE
27	BLA	Plxnc1	mRNA stability	ENSRNOG00000007970	0.11	0.11	top1	1	0.11	3.0e-06	-9.163	9.2	5.0e-20	-0.61	0.36	0.03	FALSE
28	Brain	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.06	0.02	top1	1	0.02	3.3e-03	-5.778	5.8	7.6e-09	-0.41	0.14	0.03	FALSE
29	Brain	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.06	0.02	top1	1	0.02	4.8e-03	-5.778	5.8	7.6e-09	-0.42	0.12	0.03	FALSE
30	Brain	Cdk17	gene expression	ENSRNOG00000004148	0.12	0.06	enet	78	0.07	1.8e-07	-6.185	6.4	1.6e-10	-0.25	1.00	0.00	FALSE
31	Brain	Lta4h	gene expression	ENSRNOG00000004494	0.05	0.04	top1	1	0.04	9.1e-05	-7.952	8.0	1.8e-15	-0.60	0.11	0.05	FALSE
32	Brain	Vezt	gene expression	ENSRNOG00000006514	0.24	0.22	blup	2571	0.23	1.2e-20	-8.194	-8.0	9.2e-16	0.67	0.46	0.54	FALSE
33	Brain	Ndufa12	gene expression	ENSRNOG00000007407	0.49	0.32	blup	2574	0.34	6.1e-32	-6.936	-7.2	5.1e-13	0.50	1.00	0.00	TRUE
34	Brain	Plxnc1	gene expression	ENSRNOG00000007970	0.05	0.02	blup	3131	0.04	6.3e-05	-4.893	-6.1	1.1e-09	0.52	0.80	0.18	FALSE
35	Brain	Socs2	gene expression	ENSRNOG00000008965	0.22	0.09	enet	118	0.11	5.0e-10	-9.163	8.3	1.3e-16	-0.56	0.22	0.78	FALSE
36	Brain	Nudt4	gene expression	ENSRNOG00000009094	0.86	0.63	lasso	57	0.74	8.6e-100	6.131	7.1	1.8e-12	0.01	1.00	0.00	FALSE
37	Brain	Metap2	gene expression	ENSRNOG00000021881	0.04	0.01	blup	2312	0.01	1.4e-02	-7.867	6.0	2.1e-09	-0.53	0.33	0.39	FALSE
38	Brain	Fgd6	gene expression	ENSRNOG00000054515	0.16	0.23	top1	1	0.23	8.6e-21	-8.044	-8.0	8.7e-16	0.64	0.46	0.54	FALSE
39	Brain	Tmcc3	isoform ratio	ENSRNOT00000102476	0.03	0.01	blup	2424	0.01	3.4e-02	-4.913	-6.3	2.2e-10	0.44	0.84	0.04	FALSE
40	Brain	AABR07056633.1	isoform ratio	ENSRNOT00000094647	0.03	0.00	blup	2953	0.01	7.7e-02	0.033	5.4	6.9e-08	-0.42	0.53	0.09	FALSE
41	Brain	Lta4h	intron excision ratio	chr7:27997602:27999743	0.04	0.02	top1	1	0.02	4.8e-03	-7.017	-7.0	2.3e-12	0.53	0.10	0.03	TRUE
42	Brain	Tmcc3	intron excision ratio	chr7:29133627:29159418	0.05	0.01	blup	2424	0.02	7.7e-03	-4.592	-5.8	5.1e-09	0.40	0.94	0.03	FALSE
43	Brain	Lta4h	mRNA stability	ENSRNOG00000004494	0.05	0.02	blup	2332	0.03	9.8e-04	-7.952	7.4	1.1e-13	-0.61	0.36	0.58	FALSE
44	Brain	Vezt	mRNA stability	ENSRNOG00000006514	0.20	0.20	lasso	28	0.20	1.6e-18	-7.935	8.1	4.3e-16	-0.69	0.45	0.55	FALSE
45	Brain	Ndufa12	mRNA stability	ENSRNOG00000007407	0.03	0.02	top1	1	0.02	4.2e-03	-5.206	5.2	1.9e-07	-0.59	0.18	0.03	TRUE
46	Eye	Lta4h	gene expression	ENSRNOG00000004494	0.41	0.04	lasso	24	0.07	3.0e-02	-7.717	7.4	1.4e-13	-0.62	0.26	0.41	FALSE
47	Eye	Nudt4	gene expression	ENSRNOG00000009094	0.69	0.26	top1	1	0.26	5.7e-05	6.122	6.1	9.3e-10	-0.02	0.15	0.05	FALSE
48	Eye	Fgd6	gene expression	ENSRNOG00000054515	0.52	0.13	blup	2560	0.15	2.3e-03	-7.055	-8.2	2.4e-16	0.60	0.42	0.19	FALSE
49	Eye	Elk3	isoform ratio	ENSRNOT00000005911	0.36	0.01	blup	2579	0.10	1.2e-02	-7.833	-8.8	1.3e-18	0.59	0.26	0.45	FALSE
50	IL	Vezt	gene expression	ENSRNOG00000006514	0.29	0.20	lasso	4	0.26	7.2e-07	-6.952	-8.2	2.5e-16	0.57	0.47	0.52	FALSE
51	IL	Nudt4	gene expression	ENSRNOG00000009094	0.62	0.26	blup	2748	0.41	5.1e-11	-5.796	5.6	1.9e-08	-0.24	1.00	0.00	FALSE
52	IL	Vezt	mRNA stability	ENSRNOG00000006514	0.23	0.06	blup	2568	0.10	2.4e-03	-6.992	8.2	2.9e-16	-0.61	0.55	0.32	FALSE
53	LHb	Nr2c1	alternative polyA	ENSRNOT00000009578	0.20	0.19	top1	1	0.19	2.6e-05	-6.670	6.7	2.6e-11	-0.51	0.14	0.05	FALSE
54	LHb	Nr2c1	alternative polyA	ENSRNOT00000089228	0.32	0.21	top1	1	0.21	8.9e-06	-6.670	-6.7	2.6e-11	0.51	0.15	0.05	FALSE
55	LHb	Ntn4	gene expression	ENSRNOG00000005573	0.21	0.04	blup	2473	0.06	1.6e-02	-8.282	-7.0	2.3e-12	0.61	0.32	0.48	FALSE
56	LHb	Plxnc1	gene expression	ENSRNOG00000007970	0.41	0.09	blup	3118	0.22	7.2e-06	-5.392	-8.0	1.5e-15	0.58	0.69	0.27	FALSE
57	LHb	Nudt4	gene expression	ENSRNOG00000009094	0.75	0.30	top1	1	0.30	6.1e-08	5.793	5.8	6.9e-09	-0.11	0.50	0.03	FALSE
58	LHb	Cdk17	isoform ratio	ENSRNOT00000109496	0.18	0.05	blup	2984	0.11	1.4e-03	-6.115	7.1	1.6e-12	-0.48	0.50	0.26	FALSE
59	LHb	Vezt	mRNA stability	ENSRNOG00000006514	0.40	0.20	enet	84	0.21	1.1e-05	-8.003	8.4	6.7e-17	-0.69	0.40	0.59	FALSE
60	Liver	Nedd1	gene expression	ENSRNOG00000004011	0.20	0.24	top1	1	0.24	8.6e-27	-6.191	-6.2	6.0e-10	0.30	0.57	0.43	FALSE
61	Liver	Hal	gene expression	ENSRNOG00000004502	0.15	0.05	lasso	17	0.10	6.5e-11	-6.771	6.4	1.8e-10	-0.38	0.86	0.14	FALSE
62	Liver	Amdhd1	gene expression	ENSRNOG00000005266	0.37	0.31	lasso	40	0.34	1.7e-39	-6.747	-7.8	8.9e-15	0.53	1.00	0.00	FALSE
63	Liver	Ntn4	gene expression	ENSRNOG00000005573	0.10	0.05	blup	2475	0.06	4.3e-07	-7.053	-8.1	3.8e-16	0.66	0.48	0.52	TRUE
64	Liver	Vezt	gene expression	ENSRNOG00000006514	0.14	0.12	enet	322	0.14	1.7e-15	-6.905	-6.3	2.7e-10	0.38	1.00	0.00	FALSE
65	Liver	Nr2c1	gene expression	ENSRNOG00000006983	0.04	0.03	enet	37	0.03	2.0e-04	-4.893	-6.5	1.0e-10	0.44	0.92	0.06	FALSE
66	Liver	Ndufa12	gene expression	ENSRNOG00000007407	0.42	0.43	enet	320	0.46	1.8e-56	-6.952	-7.2	7.4e-13	0.47	1.00	0.00	FALSE
67	Liver	Nudt4	gene expression	ENSRNOG00000009094	0.10	0.06	enet	21	0.06	4.1e-07	6.198	-5.6	2.7e-08	-0.01	0.98	0.00	FALSE
68	Liver	Ccdc38	gene expression	ENSRNOG00000021892	0.32	0.35	top1	1	0.35	1.8e-40	-6.747	6.7	1.5e-11	-0.53	1.00	0.00	FALSE
69	Liver	Ube2n	gene expression	ENSRNOG00000058053	0.03	0.02	enet	7	0.02	1.1e-03	5.629	-6.6	4.9e-11	0.30	0.82	0.01	FALSE
70	Liver	Mrpl42	intron excision ratio	chr7:30140191:30141604	0.03	0.02	enet	32	0.02	2.2e-03	6.990	6.7	2.7e-11	0.01	0.53	0.06	FALSE
71	Liver	Lta4h	mRNA stability	ENSRNOG00000004494	0.11	0.11	top1	1	0.11	6.2e-12	-7.944	7.9	2.0e-15	-0.59	0.68	0.32	FALSE
72	Liver	Amdhd1	mRNA stability	ENSRNOG00000005266	0.24	0.22	top1	1	0.22	6.1e-24	-6.747	-6.7	1.5e-11	0.54	1.00	0.00	FALSE
73	Liver	Snrpf	mRNA stability	ENSRNOG00000005556	0.03	0.02	top1	1	0.02	1.4e-03	-6.922	-6.9	4.4e-12	0.55	0.08	0.03	FALSE
74	Liver	Socs2	mRNA stability	ENSRNOG00000008965	0.04	0.02	blup	3463	0.02	5.8e-03	7.204	-7.7	1.3e-14	0.44	0.83	0.02	FALSE
75	NAcc	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.04	0.04	top1	1	0.04	8.1e-04	-5.877	5.9	4.2e-09	-0.43	0.15	0.03	FALSE
76	NAcc	AABR07056633.1	alternative TSS	ENSRNOT00000104436	0.04	0.03	blup	2952	0.03	1.5e-03	-5.613	-7.0	3.2e-12	0.41	0.93	0.04	FALSE
77	NAcc	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.05	0.04	top1	1	0.04	6.8e-04	-5.877	5.9	4.2e-09	-0.43	0.18	0.03	FALSE
78	NAcc	AABR07056633.1	alternative TSS	ENSRNOT00000104436	0.05	0.03	blup	2952	0.04	1.1e-03	-5.613	-6.7	2.7e-11	0.40	0.96	0.02	FALSE
79	NAcc	Elk3	gene expression	ENSRNOG00000004367	0.04	0.00	blup	2578	0.02	1.6e-02	3.588	8.1	6.5e-16	-0.40	0.54	0.24	FALSE
80	NAcc	Lta4h	gene expression	ENSRNOG00000004494	0.04	0.05	top1	1	0.05	8.4e-05	-8.322	8.3	8.6e-17	-0.58	0.08	0.38	FALSE
81	NAcc	Vezt	gene expression	ENSRNOG00000006514	0.10	0.09	blup	2569	0.14	1.4e-10	-6.894	-7.8	4.7e-15	0.55	0.89	0.11	FALSE
82	NAcc	Cep83	gene expression	ENSRNOG00000007859	0.06	0.05	top1	1	0.05	7.5e-05	-5.115	5.1	3.1e-07	-0.47	0.19	0.03	FALSE
83	NAcc	Plxnc1	gene expression	ENSRNOG00000007970	0.12	0.13	lasso	6	0.13	1.0e-09	-7.430	-7.9	3.3e-15	0.56	0.93	0.07	FALSE
84	NAcc	Nudt4	gene expression	ENSRNOG00000009094	0.47	0.46	top1	1	0.46	5.8e-38	6.103	6.1	1.0e-09	-0.33	1.00	0.00	FALSE
85	NAcc	Tmcc3	isoform ratio	ENSRNOT00000102476	0.05	0.02	blup	2420	0.04	8.4e-04	-4.942	-6.7	1.5e-11	0.51	0.50	0.27	FALSE
86	NAcc	Vezt	intron excision ratio	chr7:28538513:28538938	0.05	0.01	blup	2569	0.02	1.9e-02	-6.942	-5.9	2.8e-09	0.44	0.52	0.19	FALSE
87	NAcc	Tmcc3	intron excision ratio	chr7:29133627:29159418	0.05	0.03	blup	2420	0.05	1.4e-04	-7.783	-7.7	1.1e-14	0.58	0.57	0.39	FALSE
88	NAcc	Lta4h	mRNA stability	ENSRNOG00000004494	0.06	0.05	lasso	7	0.06	3.2e-05	-8.386	7.7	1.5e-14	-0.64	0.36	0.63	FALSE
89	NAcc	Vezt	mRNA stability	ENSRNOG00000006514	0.14	0.08	lasso	10	0.11	1.5e-08	-8.013	7.8	4.3e-15	-0.68	0.52	0.48	FALSE
90	OFC	Socs2	alternative polyA	ENSRNOT00000011948	0.45	0.06	blup	2973	0.09	3.7e-03	6.356	5.5	4.9e-08	-0.11	0.45	0.03	FALSE
91	OFC	Socs2	alternative polyA	ENSRNOT00000103867	0.46	0.06	blup	2973	0.09	4.0e-03	6.356	-5.4	6.1e-08	0.11	0.46	0.03	FALSE
92	OFC	Vezt	gene expression	ENSRNOG00000006514	0.38	0.25	enet	117	0.28	3.0e-07	-7.867	-8.2	3.3e-16	0.67	0.37	0.63	FALSE
93	OFC	Ndufa12	gene expression	ENSRNOG00000007407	0.19	0.16	top1	1	0.16	1.1e-04	-8.243	-8.2	1.7e-16	0.63	0.12	0.22	FALSE
94	OFC	Nudt4	gene expression	ENSRNOG00000009094	0.86	0.41	top1	1	0.41	7.9e-11	5.793	5.8	6.9e-09	-0.20	0.85	0.01	FALSE
95	OFC	Socs2	isoform ratio	ENSRNOT00000103867	0.33	0.15	top1	1	0.15	2.3e-04	6.651	-6.7	2.9e-11	0.04	0.15	0.05	FALSE
96	OFC	Vezt	mRNA stability	ENSRNOG00000006514	0.24	0.12	blup	2568	0.14	3.2e-04	-8.003	8.5	2.4e-17	-0.67	0.41	0.56	FALSE
97	PL	Socs2	alternative polyA	ENSRNOT00000011948	0.10	0.05	top1	1	0.05	1.5e-04	7.235	7.2	4.6e-13	-0.34	0.72	0.01	FALSE
98	PL	Socs2	alternative polyA	ENSRNOT00000103867	0.09	0.04	enet	16	0.04	2.5e-04	7.235	-7.1	9.5e-13	0.20	0.99	0.00	FALSE
99	PL	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.09	0.06	top1	1	0.06	2.6e-05	-5.909	5.9	3.5e-09	-0.43	0.88	0.00	FALSE
100	PL	AABR07056633.1	alternative TSS	ENSRNOT00000104436	0.09	0.06	top1	1	0.06	2.2e-05	-5.909	-5.9	3.5e-09	0.43	0.90	0.00	FALSE
101	PL	AABR07056633.1	alternative TSS	ENSRNOT00000094647	0.09	0.06	top1	1	0.06	2.9e-05	-5.909	5.9	3.5e-09	-0.43	0.89	0.00	FALSE
102	PL	AABR07056633.1	alternative TSS	ENSRNOT00000104436	0.09	0.06	top1	1	0.06	2.6e-05	-5.909	-5.9	3.5e-09	0.44	0.89	0.00	FALSE
103	PL	Vezt	gene expression	ENSRNOG00000006514	0.35	0.39	lasso	7	0.41	4.8e-33	-7.097	-7.8	7.3e-15	0.60	0.85	0.15	FALSE
104	PL	Ndufa12	gene expression	ENSRNOG00000007407	0.07	0.06	lasso	18	0.07	1.0e-05	-7.124	-8.1	5.1e-16	0.36	0.45	0.55	TRUE
105	PL	Socs2	gene expression	ENSRNOG00000008965	0.05	0.04	top1	1	0.04	9.1e-04	-9.893	9.9	4.5e-23	-0.69	0.11	0.04	TRUE
106	PL	Nudt4	gene expression	ENSRNOG00000009094	0.68	0.51	enet	84	0.55	1.1e-49	-5.871	7.1	1.7e-12	-0.34	1.00	0.00	FALSE
107	PL	Fgd6	gene expression	ENSRNOG00000054515	0.07	0.09	lasso	7	0.10	5.4e-08	-6.894	-6.9	5.4e-12	0.50	0.62	0.38	FALSE
108	PL	Socs2	isoform ratio	ENSRNOT00000011948	0.10	0.05	top1	1	0.05	1.4e-04	6.653	6.7	2.9e-11	-0.30	0.77	0.01	FALSE
109	PL	Socs2	isoform ratio	ENSRNOT00000103867	0.10	0.05	top1	1	0.05	1.3e-04	6.653	-6.7	2.9e-11	0.30	0.77	0.01	FALSE
110	PL	Vezt	mRNA stability	ENSRNOG00000006514	0.27	0.38	top1	1	0.38	1.6e-30	-7.845	7.8	4.3e-15	-0.66	0.80	0.20	FALSE
111	PL	Plxnc1	mRNA stability	ENSRNOG00000007970	0.05	0.05	top1	1	0.05	1.2e-04	-8.592	8.6	8.6e-18	-0.59	0.21	0.03	FALSE
112	PL	Cradd	mRNA stability	ENSRNOG00000008507	0.09	0.08	top1	1	0.07	2.3e-06	-9.687	9.7	3.4e-22	-0.63	0.61	0.09	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.