chr7:26,005,811-30,904,027

Trait: Length with tail

Best TWAS P=3.20e-25 · Best GWAS P=5.05e-25 conditioned to NaN

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Nr2c1 alternative polyA NM_145780.2 0.04 2761 0.03 3.4e-04 -7.84 4.43e-15 0.06 FALSE
Adipose Nr2c1 alternative polyA XM_039078458.1 0.04 2761 0.03 4.4e-04 7.81 5.81e-15 0.06 FALSE
Adipose Socs2 alternative polyA XM_017595137.2 0.04 11 0.03 5.0e-04 -6.27 3.60e-10 0.01 FALSE
Adipose Cep83os gene expression Cep83os 0.15 142 0.12 1.2e-13 -5.42 5.97e-08 0.03 FALSE
Adipose Elk3 gene expression Elk3 0.19 2608 0.08 1.3e-09 6.51 7.53e-11 0.08 FALSE
Adipose LOC102548950 gene expression LOC102548950 0.09 15 0.08 1.5e-09 5.6 2.12e-08 0.02 FALSE
Adipose Ndufa12 gene expression Ndufa12 0.31 161 0.21 1.5e-22 7.03 2.13e-12 0 FALSE
Adipose Socs2 gene expression Socs2 0.04 3496 0.01 4.0e-02 -5.66 1.54e-08 0.26 FALSE
Adipose Ube2n gene expression Ube2n 0.06 1 0.01 2.9e-02 7.71 1.30e-14 0.03 FALSE
Adipose Vezt gene expression Vezt 0.11 1 0.1 8.4e-11 6.97 3.12e-12 0 FALSE
Adipose Cep83 isoform ratio XM_008765318.3 0.03 1 0.02 1.7e-03 -7.08 1.43e-12 0.03 FALSE
Adipose Nr2c1 isoform ratio NM_145780.2 0.02 2761 0.01 3.2e-02 -8.17 2.99e-16 0.25 FALSE
Adipose Nr2c1 isoform ratio XM_008765216.3 0.02 2761 0.01 2.0e-02 8.21 2.23e-16 0.22 FALSE
Adipose Cep83 intron excision ratio chr7_29322957_29325469 0.03 1 0.02 1.2e-03 7.06 1.69e-12 0.03 FALSE
Adipose Cradd mRNA stability Cradd 0.04 1 0 1.4e-01 -6.46 1.06e-10 0.03 FALSE
Adipose Lta4h mRNA stability Lta4h 0.08 2336 0.02 3.4e-03 5.26 1.41e-07 0.19 FALSE
Adipose Mrpl42 mRNA stability Mrpl42 0.07 1 0.03 2.9e-04 6.03 1.59e-09 0.03 FALSE
Adipose Nedd1 mRNA stability Nedd1 0.06 2868 0.06 6.7e-07 -5.57 2.60e-08 0.48 FALSE
Adipose Vezt mRNA stability Vezt 0.07 2620 0.09 3.0e-10 -7.47 7.99e-14 0.02 FALSE
BLA Nr2c1 alternative polyA NM_145780.2 0.08 2770 0.07 1.1e-04 -8.27 1.35e-16 0.41 FALSE
BLA Nr2c1 alternative polyA XM_039078458.1 0.08 2770 0.07 1.1e-04 8.32 8.72e-17 0.42 FALSE
BLA Socs2 alternative polyA XM_017595137.2 0.1 1 0.06 3.0e-04 -5.65 1.64e-08 0.04 FALSE
BLA Socs2 alternative polyA XM_039079990.1 0.09 3419 0.02 4.0e-02 -8.26 1.44e-16 0.04 FALSE
BLA Ccdc38 gene expression Ccdc38 0.05 2469 0.02 3.8e-02 7.27 3.57e-13 0.31 FALSE
BLA Cdk17 gene expression Cdk17 0.09 2997 0.03 8.8e-03 -6.35 2.17e-10 0.22 FALSE
BLA Fgd6 gene expression Fgd6 0.08 1 0.08 3.4e-05 8.48 2.25e-17 0.86 FALSE
BLA LOC108351432 gene expression LOC108351432 0.33 28 0.29 5.5e-16 6.2 5.53e-10 0 FALSE
BLA LOC120093559 gene expression LOC120093559 0.07 3160 0.04 2.2e-03 7.85 4.31e-15 0.13 FALSE
BLA Metap2 gene expression Metap2 0.08 44 0.06 2.5e-04 -6.88 5.87e-12 0.55 FALSE
BLA Mir331 gene expression Mir331 0.06 65 0.06 2.8e-04 -8.18 2.87e-16 0.41 FALSE
BLA Ntn4 gene expression Ntn4 0.06 2492 0.04 2.8e-03 7.02 2.15e-12 0.41 FALSE
BLA Nudt4 gene expression Nudt4 0.49 81 0.37 9.6e-21 -7.1 1.24e-12 0 FALSE
BLA Vezt gene expression Vezt 0.29 28 0.31 3.5e-17 -7.9 2.84e-15 0.65 FALSE
BLA Cfap54 isoform ratio XM_039080089.1 0.22 24 0.09 2.5e-05 -5.5 3.88e-08 0.06 FALSE
BLA Nr2c1 isoform ratio NM_145780.2 0.05 1 0.04 2.1e-03 7.12 1.05e-12 0.04 FALSE
BLA Socs2 isoform ratio XM_017595137.2 0.13 1 0.04 3.2e-03 -5.65 1.64e-08 0.04 FALSE
BLA Lta4h intron excision ratio chr7_27997602_27999743 0.06 1 0.03 7.6e-03 6.87 6.62e-12 0.04 FALSE
BLA Tmcc3 intron excision ratio chr7_29100427_29159418 0.17 3 0.12 7.4e-07 5.58 2.40e-08 0.25 FALSE
BLA Tmcc3 intron excision ratio chr7_29133627_29159418 0.09 4 0.07 2.0e-04 -5.72 1.06e-08 0.44 TRUE
BLA Vezt intron excision ratio chr7_28557619_28560958 0.12 2627 0.03 6.0e-03 6.69 2.26e-11 0.2 FALSE
BLA Mrpl42 mRNA stability Mrpl42 0.06 3247 0.03 9.8e-03 -8.96 3.25e-19 0.17 FALSE
BLA Plxnc1 mRNA stability Plxnc1 0.09 1 0.08 7.2e-05 -9.16 5.04e-20 0.03 FALSE
BLA Vezt mRNA stability Vezt 0.27 120 0.33 1.5e-18 8.13 4.30e-16 0.64 FALSE
Brain Nr2c1 alternative polyA NM_145780.2 0.05 72 0.06 6.6e-06 7.55 4.22e-14 0.03 FALSE
Brain Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.06 2.8e-06 -6.96 3.40e-12 0.01 FALSE
Brain Fgd6 alternative TSS NM_001137645.1 0.04 1 0.04 3.3e-04 7.89 3.13e-15 0.16 FALSE
Brain Fgd6 alternative TSS XM_039079738.1 0.05 1 0.04 2.0e-04 -7.89 3.13e-15 0.18 FALSE
Brain Ccdc38 gene expression Ccdc38 0.11 2469 0.07 4.3e-07 5.62 1.86e-08 0.28 FALSE
Brain Cdk17 gene expression Cdk17 0.11 117 0.09 1.4e-08 -6.34 2.29e-10 0 FALSE
Brain Fgd6 gene expression Fgd6 0.17 1 0.2 6.5e-18 8.03 9.51e-16 0.51 FALSE
Brain LOC108351432 gene expression LOC108351432 0.2 61 0.2 1.0e-18 -6.46 1.02e-10 0 FALSE
Brain LOC120093556 gene expression LOC120093556 0.05 2435 0.03 1.4e-03 -6.45 1.14e-10 0.15 FALSE
Brain LOC120093559 gene expression LOC120093559 0.04 1 0.03 5.1e-04 -5.33 9.66e-08 0.03 FALSE
Brain LOC120093563 gene expression LOC120093563 0.05 4 0.03 1.2e-03 10.38 3.20e-25 0.85 TRUE
Brain Lta4h gene expression Lta4h 0.04 1 0.01 2.0e-02 -7.8 6.35e-15 0.03 FALSE
Brain Ndufa12 gene expression Ndufa12 0.42 2644 0.33 3.8e-31 -7.47 8.28e-14 0 FALSE
Brain Nudt4 gene expression Nudt4 0.9 44 0.75 6.3e-103 6.86 6.70e-12 0 FALSE
Brain Plxnc1 gene expression Plxnc1 0.04 3165 0.04 1.2e-04 -6.82 9.42e-12 0.05 FALSE
Brain Vezt gene expression Vezt 0.2 2627 0.22 2.2e-20 -8.02 1.06e-15 0.49 FALSE
Brain Lta4h isoform ratio NM_001030031.2 0.04 2339 0.01 1.4e-02 6.4 1.59e-10 0.21 FALSE
Brain Lta4h isoform ratio XM_006241251.4 0.04 2339 0.01 1.6e-02 -6.31 2.81e-10 0.19 FALSE
Brain Plxnc1 isoform ratio XM_039080099.1 0.06 1 0.04 6.3e-05 -6.72 1.86e-11 0.03 FALSE
Brain Lta4h intron excision ratio chr7_27997602_27999743 0.05 1 0.03 1.3e-03 7.01 2.46e-12 0.03 FALSE
Brain Vezt intron excision ratio chr7_28536176_28538306 0.04 2627 0.03 1.3e-03 8.48 2.19e-17 0.57 FALSE
Brain Lta4h mRNA stability Lta4h 0.09 1 0.07 3.0e-07 -8.03 9.70e-16 0.49 FALSE
Brain Vezt mRNA stability Vezt 0.08 57 0.07 4.3e-07 7.29 3.02e-13 0.5 FALSE
Eye Lta4h gene expression Lta4h 0.37 1 0.19 7.8e-04 -7.94 1.95e-15 0.06 FALSE
Eye Fgd6 isoform ratio NM_001137645.1 0.54 2617 0.13 4.7e-03 -7.47 8.06e-14 0.19 FALSE
IL Socs2 alternative polyA XM_039079990.1 0.35 17 0.19 2.1e-05 6.12 9.30e-10 0.02 FALSE
IL Nudt4 gene expression Nudt4 0.61 41 0.43 1.2e-11 5.85 4.90e-09 0 FALSE
IL Vezt gene expression Vezt 0.31 2627 0.17 6.6e-05 -8.09 5.75e-16 0.55 FALSE
IL Cep83 isoform ratio NM_001014266.2 0.17 1 0.05 2.9e-02 -5.34 9.14e-08 0.05 FALSE
IL Socs2 isoform ratio XM_039079990.1 0.31 1 0.23 3.9e-06 5.61 1.99e-08 0.04 FALSE
IL Vezt mRNA stability Vezt 0.26 18 0.08 5.4e-03 -8.09 6.08e-16 0.46 FALSE
LHb LOC120093559 gene expression LOC120093559 0.27 116 0.06 1.6e-02 -5.91 3.52e-09 0.19 FALSE
LHb Nudt4 gene expression Nudt4 0.78 41 0.27 3.1e-07 5.76 8.32e-09 0 FALSE
LHb Plxnc1 gene expression Plxnc1 0.41 3149 0.22 6.1e-06 -6.69 2.24e-11 0.17 FALSE
LHb Tmcc3 mRNA stability Tmcc3 0.35 2497 0.08 6.3e-03 -5.87 4.47e-09 0.19 FALSE
Liver Nr2c1 alternative polyA NM_145780.2 0.08 29 0.07 1.4e-08 7.17 7.30e-13 0.01 FALSE
Liver Nr2c1 alternative polyA XM_039078458.1 0.08 31 0.08 5.8e-09 -7.16 8.26e-13 0.01 FALSE
Liver Ccdc38 alternative TSS XM_039080092.1 0.02 1 0.02 3.7e-03 6.83 8.28e-12 0.03 FALSE
Liver Amdhd1 gene expression Amdhd1 0.38 267 0.37 1.6e-42 7.55 4.26e-14 0 FALSE
Liver Hal gene expression Hal 0.13 13 0.07 1.1e-08 6.02 1.74e-09 0.18 FALSE
Liver LOC102548950 gene expression LOC102548950 0.13 1 0.11 3.5e-12 -6.78 1.18e-11 0 FALSE
Liver LOC102553539 gene expression LOC102553539 0.14 1 0.11 5.6e-12 7.92 2.32e-15 0.29 FALSE
Liver Ndufa12 gene expression Ndufa12 0.41 2635 0.47 9.6e-58 -6.89 5.43e-12 0 TRUE
Liver Nedd1 gene expression Nedd1 0.18 2868 0.22 1.6e-23 -6.22 5.03e-10 0.45 FALSE
Liver Nr2c1 gene expression Nr2c1 0.03 35 0.02 2.5e-03 6.67 2.48e-11 0.1 FALSE
Liver Ntn4 gene expression Ntn4 0.1 2485 0.07 4.5e-08 -7.99 1.31e-15 0.53 FALSE
Liver Nudt4 gene expression Nudt4 0.11 39 0.06 1.4e-07 6.93 4.32e-12 0 FALSE
Liver Vezt gene expression Vezt 0.14 136 0.15 2.1e-16 6.37 1.85e-10 0 FALSE
Liver Ccdc38 isoform ratio XM_039080091.1 0.19 182 0.2 2.7e-22 -6.56 5.39e-11 0 FALSE
Liver Ccdc38 isoform ratio XM_039080094.1 0.24 2464 0.27 3.2e-30 -6.93 4.25e-12 0 FALSE
Liver Ccdc38 isoform ratio XM_039080095.1 0.05 2464 0.04 5.0e-05 7.06 1.72e-12 0.27 FALSE
Liver Nr2c1 isoform ratio NM_145780.2 0.09 15 0.09 1.0e-09 7.06 1.71e-12 0.01 FALSE
Liver LOC102553539 intron excision ratio chr7_27999133_27999512 0.13 2435 0.1 1.2e-11 8.79 1.48e-18 0.68 TRUE
Liver LOC102553539 intron excision ratio chr7_27999133_27999838 0.17 2435 0.11 3.3e-12 -8.06 7.67e-16 0.66 FALSE
Liver Amdhd1 mRNA stability Amdhd1 0.11 1 0.09 1.2e-10 6.75 1.51e-11 0 FALSE
Liver Ccdc38 mRNA stability Ccdc38 0.33 1 0.34 1.4e-38 -6.75 1.51e-11 0 FALSE
Liver LOC102553539 mRNA stability LOC102553539 0.09 2435 0.06 2.8e-07 -7.22 5.04e-13 0.67 FALSE
Liver Lta4h mRNA stability Lta4h 0.12 2336 0.09 3.1e-10 7.92 2.39e-15 0.69 FALSE
Liver Snrpf mRNA stability Snrpf 0.03 1 0.01 1.1e-02 6.92 4.45e-12 0.03 FALSE
Liver Tmcc3 mRNA stability Tmcc3 0.03 2486 0.02 2.6e-03 -8.19 2.70e-16 0.65 FALSE
NAcc Nr2c1 alternative polyA NM_145780.2 0.05 1 0.04 7.1e-06 7.89 3.13e-15 0.21 FALSE
NAcc Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.05 4.8e-06 -7.89 3.13e-15 0.23 FALSE
NAcc Socs2 alternative polyA XM_017595137.2 0.05 1 0.05 1.8e-06 -5.63 1.81e-08 0 FALSE
NAcc Socs2 alternative polyA XM_039079990.1 0.1 1 0.06 5.3e-07 6.24 4.26e-10 0 FALSE
NAcc Vezt alternative polyA XM_039078694.1 0.02 1 0.01 2.1e-02 -7.17 7.39e-13 0.03 FALSE
NAcc Vezt alternative polyA XM_039078694.1 0.02 1 0.01 2.7e-02 -7.17 7.39e-13 0.03 FALSE
NAcc Tmcc3 alternative TSS XM_006241261.4 0.03 2428 0.01 3.0e-02 -7.23 4.66e-13 0.2 FALSE
NAcc Elk3 gene expression Elk3 0.06 33 0.06 9.5e-08 6.27 3.66e-10 0.05 FALSE
NAcc Fgd6 gene expression Fgd6 0.04 2617 0.02 8.1e-04 -8.09 6.20e-16 0.66 FALSE
NAcc Lta4h gene expression Lta4h 0.04 2339 0.04 8.3e-06 8.54 1.33e-17 0.65 FALSE
NAcc Mir331 gene expression Mir331 0.03 2 0.02 6.8e-04 8.06 7.65e-16 0.55 FALSE
NAcc Nudt4 gene expression Nudt4 0.59 93 0.58 4.0e-82 -7.09 1.36e-12 0 FALSE
NAcc Plxnc1 gene expression Plxnc1 0.08 6 0.11 3.1e-12 -7.3 2.94e-13 0 FALSE
NAcc Vezt gene expression Vezt 0.07 2617 0.12 2.9e-14 -8.43 3.48e-17 0.49 FALSE
NAcc Plxnc1 isoform ratio XM_039080099.1 0.02 3009 0.01 2.5e-02 8.11 5.13e-16 0.1 FALSE
NAcc LOC120093559 intron excision ratio chr7_29545175_29548381 0.05 3010 0.04 2.9e-05 -6.29 3.11e-10 0.11 FALSE
NAcc Tmcc3 intron excision ratio chr7_29133627_29159418 0.05 52 0.05 3.3e-06 6.43 1.30e-10 0.09 FALSE
NAcc Vezt intron excision ratio chr7_28538513_28538938 0.05 11 0.03 1.2e-04 -7.93 2.28e-15 0.29 FALSE
NAcc Lta4h mRNA stability Lta4h 0.05 1 0.07 1.5e-08 -7.8 6.35e-15 0.13 FALSE
NAcc Vezt mRNA stability Vezt 0.12 16 0.2 3.0e-23 -8.39 4.68e-17 0.74 FALSE
OFC LOC108351432 gene expression LOC108351432 0.34 12 0.25 1.3e-06 6.03 1.61e-09 0.1 FALSE
OFC Ndufa12 gene expression Ndufa12 0.22 1 0.13 4.7e-04 6.87 6.42e-12 0.05 FALSE
OFC Nudt4 gene expression Nudt4 0.88 20 0.42 5.0e-11 6.36 2.04e-10 0 FALSE
OFC Vezt gene expression Vezt 0.26 1 0.18 4.2e-05 8.03 9.70e-16 0.08 FALSE
OFC Vezt mRNA stability Vezt 0.37 1 0.23 4.6e-06 7.1 1.25e-12 0.05 FALSE
PL LOC102548848 alternative polyA XR_005486848.1 0.16 3004 0.1 8.6e-11 5.33 9.95e-08 0 FALSE
PL LOC102548848 alternative polyA XR_355387.4 0.12 3004 0.07 3.7e-08 -5.66 1.52e-08 0 FALSE
PL Nr2c1 alternative polyA NM_145780.2 0.04 1 0.06 3.1e-07 6.96 3.46e-12 0 TRUE
PL Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.06 2.8e-07 -6.96 3.46e-12 0 FALSE
PL Socs2 alternative polyA XM_017595137.2 0.09 1 0.08 1.7e-09 -7.23 4.94e-13 0 FALSE
PL Socs2 alternative polyA XM_039079993.1 0.06 17 0.04 1.1e-05 -9.13 6.83e-20 0.01 FALSE
PL Socs2 alternative polyA XM_017595137.2 0.2 9 0.16 5.3e-17 7.05 1.82e-12 0 FALSE
PL Socs2 alternative polyA XM_039079990.1 0.23 1 0.23 9.1e-25 6.51 7.45e-11 0 FALSE
PL Socs2 alternative polyA XM_039079993.1 0.07 1 0.04 9.4e-06 7.05 1.73e-12 0 FALSE
PL Fgd6 gene expression Fgd6 0.06 1 0.08 3.0e-09 7.07 1.55e-12 0 FALSE
PL LOC108351432 gene expression LOC108351432 0.31 2945 0.41 1.0e-48 6.36 2.07e-10 0 FALSE
PL LOC120093559 gene expression LOC120093559 0.08 29 0.09 9.4e-10 -5.49 4.05e-08 0.05 FALSE
PL Lta4h gene expression Lta4h 0.03 2339 0.01 3.5e-02 8.18 2.92e-16 0.57 FALSE
PL Mir331 gene expression Mir331 0.02 2415 0.03 6.2e-04 8.31 9.74e-17 0.37 FALSE
PL Ndufa12 gene expression Ndufa12 0.07 1 0.13 1.5e-14 7.89 3.13e-15 0.32 FALSE
PL Nudt4 gene expression Nudt4 0.68 64 0.62 1.3e-86 -6.56 5.42e-11 0 FALSE
PL Vezt gene expression Vezt 0.26 22 0.36 2.7e-41 -8.1 5.39e-16 0.73 FALSE
PL Socs2 isoform ratio XM_017595137.2 0.12 1 0.1 1.5e-10 -7.2 5.99e-13 0 FALSE
PL LOC102548260 intron excision ratio chr7_26674153_26674654 0.05 1998 0.01 7.2e-02 5.43 5.68e-08 0.71 TRUE
PL Socs2 intron excision ratio chr7_29987686_30043188 0.03 4 0.04 8.7e-05 -5.99 2.13e-09 0 TRUE
PL Lta4h mRNA stability Lta4h 0.05 1 0.07 5.9e-08 -8.14 4.09e-16 0.69 FALSE
PL Mrpl42 mRNA stability Mrpl42 0.09 1 0.09 4.1e-10 5.94 2.94e-09 0 FALSE
PL Plxnc1 mRNA stability Plxnc1 0.04 1 0.03 4.5e-04 -7.56 3.92e-14 0.03 FALSE
PL Vezt mRNA stability Vezt 0.16 21 0.22 2.5e-23 -8.07 6.97e-16 0.6 TRUE
pVTA Socs2 alternative polyA XM_039079990.1 0.16 1 0.1 3.5e-05 5.84 5.15e-09 0.04 FALSE
pVTA Socs2 alternative polyA XM_039079990.1 0.11 1 0.06 2.1e-03 5.84 5.15e-09 0.04 FALSE
pVTA Cdk17 gene expression Cdk17 0.4 80 0.19 1.4e-08 -5.87 4.43e-09 0 FALSE
pVTA Fgd6 gene expression Fgd6 0.05 1 0.03 2.7e-02 6.78 1.20e-11 0.04 FALSE
pVTA Nudt4 gene expression Nudt4 0.69 26 0.55 2.4e-28 6.32 2.63e-10 0 FALSE
pVTA Plxnc1 gene expression Plxnc1 0.1 71 0.06 1.3e-03 8.17 3.01e-16 0.05 TRUE
pVTA Vezt gene expression Vezt 0.1 1 0.04 4.9e-03 8.11 5.06e-16 0.1 FALSE
pVTA Socs2 isoform ratio XM_039079990.1 0.1 1 0.07 6.9e-04 6.18 6.36e-10 0.04 FALSE
pVTA Lta4h intron excision ratio chr7_27997602_27999743 0.06 2339 0.05 4.7e-03 -6.24 4.26e-10 0.17 FALSE
pVTA Lta4h mRNA stability Lta4h 0.18 2339 0.12 4.8e-06 7.09 1.37e-12 0.59 FALSE
pVTA Nudt4 mRNA stability Nudt4 0.1 1 0.09 7.3e-05 6.16 7.21e-10 0.04 FALSE
RMTg Nudt4 gene expression Nudt4 0.53 28 0.47 2.2e-14 5.9 3.60e-09 0 TRUE
RMTg LOC102548848 isoform ratio XR_355387.4 0.16 3004 0.08 3.7e-03 -5.61 2.04e-08 0.05 FALSE