Hub : Traits : Length without tail : ←

chr12:27,006-6,860,177

Trait: Length without tail

Best TWAS P=2.521963e-14 · Best GWAS P=2.42614e-12 conditioned to NaN

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	N4bp2l2	alternative polyA	ENSRNOT00000001468	0.04	0.00	blup	681	0.01	6.8e-02	-5.7	5.3	1.3e-07	-0.45	0.05	0.68	FALSE
2	Adipose	N4bp2l2	alternative polyA	ENSRNOT00000111844	0.14	0.12	top1	1	0.12	7.1e-13	-5.7	5.7	1.1e-08	-0.33	0.03	0.98	FALSE
3	Adipose	N4bp2l2	alternative polyA	ENSRNOT00000118063	0.14	0.12	top1	1	0.12	3.9e-13	-5.7	-5.7	1.1e-08	0.33	0.03	0.98	FALSE
4	Adipose	B3glct	alternative polyA	ENSRNOT00000116254	0.06	0.03	enet	18	0.03	1.9e-04	-3.5	-5.4	7.1e-08	0.65	0.79	0.20	TRUE
5	Adipose	Pet100	alternative TSS	ENSRNOT00000071928	0.22	0.10	enet	116	0.13	3.4e-14	-5.6	5.6	1.9e-08	-0.43	0.21	0.79	FALSE
6	Adipose	Pet100	alternative TSS	ENSRNOT00000107172	0.22	0.10	enet	122	0.13	2.6e-14	-4.8	-5.6	1.7e-08	0.43	0.22	0.78	FALSE
7	Adipose	Fry	gene expression	ENSRNOG00000000894	0.24	0.23	lasso	14	0.24	2.4e-26	-6.2	-6.7	2.3e-11	0.92	0.76	0.24	FALSE
8	Adipose	Hsph1	gene expression	ENSRNOG00000000902	0.56	0.22	enet	55	0.22	1.8e-24	-6.3	-6.5	9.6e-11	0.83	0.43	0.57	FALSE
9	Adipose	Trappc5	gene expression	ENSRNOG00000001003	0.09	0.03	top1	1	0.03	9.9e-05	-5.7	-5.7	1.1e-08	0.29	0.07	0.48	TRUE
10	Adipose	Evi5l	gene expression	ENSRNOG00000001034	0.09	0.00	top1	1	0.00	4.2e-01	-5.3	5.3	1.2e-07	-0.10	0.06	0.07	FALSE
11	Adipose	N4bp2l1	gene expression	ENSRNOG00000059322	0.32	0.23	lasso	16	0.24	1.2e-26	-5.9	-5.9	3.0e-09	0.39	0.02	0.98	FALSE
12	Adipose	Pet100	isoform ratio	ENSRNOT00000071928	0.23	0.11	enet	64	0.13	1.8e-14	-5.6	5.7	1.5e-08	-0.41	0.16	0.84	FALSE
13	Adipose	Pet100	isoform ratio	ENSRNOT00000107172	0.23	0.09	enet	66	0.13	2.6e-14	-5.6	-5.6	1.7e-08	0.41	0.15	0.85	FALSE
14	Adipose	Zfp958	isoform ratio	ENSRNOT00000102786	0.03	0.00	enet	169	0.01	6.9e-03	-4.5	5.4	8.1e-08	-0.50	0.30	0.30	FALSE
15	Adipose	Zfp958	intron excision ratio	chr12:3971128:3971331	0.03	0.00	blup	1113	0.01	2.8e-02	-4.4	5.2	2.6e-07	-0.47	0.24	0.14	FALSE
16	Adipose	Fry	mRNA stability	ENSRNOG00000000894	0.08	0.05	blup	2970	0.05	2.0e-06	-5.9	-6.2	7.5e-10	0.81	0.83	0.17	FALSE
17	Adipose	Snapc2	mRNA stability	ENSRNOG00000001056	0.11	0.00	enet	19	0.01	5.0e-02	-4.7	-5.4	6.3e-08	0.08	0.31	0.36	FALSE
18	Adipose	Elavl1	mRNA stability	ENSRNOG00000001069	0.16	0.06	blup	2406	0.07	9.4e-09	-4.3	5.1	3.4e-07	-0.52	0.75	0.25	FALSE
19	BLA	N4bp2l1	gene expression	ENSRNOG00000059322	0.13	0.08	top1	1	0.08	5.7e-05	-5.2	-5.2	1.9e-07	0.33	0.12	0.26	FALSE
20	BLA	NA	gene expression	ENSRNOG00000065898	0.10	0.01	enet	20	0.03	8.9e-03	-6.0	-6.8	1.4e-11	0.84	0.60	0.08	FALSE
21	BLA	AABR07035218.1	intron excision ratio	chr12:5973104:5975080	0.09	0.02	blup	2412	0.04	4.3e-03	-5.2	-5.1	3.4e-07	0.75	0.55	0.26	FALSE
22	BLA	Insr	intron excision ratio	chr12:1257822:1307450	0.67	0.21	enet	213	0.35	9.1e-20	-5.7	5.6	2.6e-08	-0.37	0.10	0.90	FALSE
23	BLA	Pet100	intron excision ratio	chr12:1680794:1680963	0.36	0.12	lasso	13	0.19	1.7e-10	-5.3	-5.5	3.3e-08	0.33	0.15	0.85	FALSE
24	BLA	Pet100	intron excision ratio	chr12:1680995:1681508	0.35	0.12	lasso	11	0.20	9.8e-11	-5.3	5.5	4.1e-08	-0.29	0.16	0.84	FALSE
25	BLA	Fry	mRNA stability	ENSRNOG00000000894	0.13	0.09	blup	2972	0.11	2.1e-06	-3.8	-5.2	2.3e-07	0.77	0.96	0.04	FALSE
26	BLA	Insr	mRNA stability	ENSRNOG00000029986	0.74	0.40	enet	153	0.48	1.6e-28	-5.6	5.6	2.6e-08	-0.40	0.10	0.90	FALSE
27	Brain	Zfp958	alternative polyA	ENSRNOT00000102786	0.06	0.04	enet	10	0.06	7.8e-06	-5.0	5.1	3.1e-07	-0.72	0.18	0.81	FALSE
28	Brain	Fry	alternative TSS	ENSRNOT00000076483	0.03	0.02	enet	6	0.02	2.9e-03	-3.4	5.1	3.3e-07	-0.84	0.63	0.25	FALSE
29	Brain	Fry	alternative TSS	ENSRNOT00000076483	0.03	0.02	enet	6	0.02	2.6e-03	-3.4	5.1	3.2e-07	-0.84	0.64	0.25	FALSE
30	Brain	Zfp958	alternative TSS	ENSRNOT00000103468	0.17	0.12	blup	1115	0.13	7.5e-12	-5.1	5.5	5.0e-08	-0.67	0.17	0.83	FALSE
31	Brain	Zfp958	alternative TSS	ENSRNOT00000104360	0.17	0.12	lasso	14	0.13	1.0e-11	-5.1	-5.5	4.8e-08	0.71	0.17	0.83	FALSE
32	Brain	Rxfp2	gene expression	ENSRNOG00000000897	0.13	0.07	blup	3311	0.12	3.5e-11	-6.6	-6.4	1.5e-10	0.80	0.47	0.53	FALSE
33	Brain	Arhgef18	gene expression	ENSRNOG00000028090	0.12	0.06	enet	11	0.08	1.2e-07	-4.3	-5.5	4.5e-08	0.47	0.22	0.78	FALSE
34	Brain	N4bp2l1	gene expression	ENSRNOG00000059322	0.06	0.05	lasso	2	0.05	3.5e-05	-5.8	-5.8	6.2e-09	0.43	0.02	0.97	FALSE
35	Brain	NA	gene expression	ENSRNOG00000065898	0.05	0.06	top1	1	0.06	4.8e-06	-6.0	-6.0	2.4e-09	0.88	0.67	0.03	FALSE
36	Brain	Rxfp2	intron excision ratio	chr12:4945988:4950591	0.07	0.01	lasso	6	0.02	7.0e-03	-6.6	-6.6	3.1e-11	0.86	0.26	0.68	FALSE
37	Brain	Rxfp2	intron excision ratio	chr12:4945988:4950702	0.05	0.01	lasso	5	0.02	7.8e-03	-6.7	6.7	2.4e-11	-0.85	0.26	0.66	FALSE
38	Brain	Trappc5	intron excision ratio	chr12:1737769:1740114	0.05	0.02	enet	18	0.03	5.1e-04	-4.7	-5.8	7.3e-09	0.24	0.44	0.42	FALSE
39	Brain	Insr	intron excision ratio	chr12:1257822:1307450	0.63	0.41	enet	224	0.46	1.8e-47	-5.4	5.6	2.0e-08	-0.36	0.10	0.90	FALSE
40	Brain	Insr	mRNA stability	ENSRNOG00000029986	0.72	0.55	enet	150	0.60	8.8e-69	-5.4	5.6	1.7e-08	-0.41	0.10	0.90	FALSE
41	Brain	Katnal1	mRNA stability	ENSRNOG00000047618	0.33	0.31	blup	2320	0.32	2.0e-30	-5.0	-5.3	1.0e-07	0.75	0.91	0.09	FALSE
42	Brain	B3glct	mRNA stability	ENSRNOG00000061346	0.18	0.19	lasso	3	0.24	1.6e-22	-3.5	5.4	5.7e-08	-0.76	1.00	0.00	FALSE
43	Eye	Fry	gene expression	ENSRNOG00000000894	0.41	0.13	blup	2972	0.18	9.6e-04	-6.0	-6.3	3.6e-10	0.83	0.41	0.27	FALSE
44	Eye	Elavl1	intron excision ratio	chr12:2667464:2684652	0.69	0.25	lasso	30	0.31	1.3e-05	-5.4	5.7	1.3e-08	-0.52	0.26	0.57	FALSE
45	IL	AABR07035218.1	alternative polyA	ENSRNOT00000098255	0.15	0.03	blup	2409	0.04	3.7e-02	-3.8	-5.3	9.3e-08	0.79	0.30	0.62	FALSE
46	IL	Snapc2	gene expression	ENSRNOG00000001056	0.35	0.00	lasso	5	0.03	8.2e-02	-4.7	-5.3	1.1e-07	0.54	0.27	0.30	FALSE
47	IL	Insr	intron excision ratio	chr12:1257822:1307450	0.73	0.50	top1	1	0.50	6.5e-14	-5.4	5.4	6.8e-08	-0.47	0.33	0.66	FALSE
48	IL	Fry	mRNA stability	ENSRNOG00000000894	0.16	0.00	blup	2960	0.11	1.7e-03	-6.1	-6.3	2.2e-10	0.85	0.64	0.18	FALSE
49	IL	Pds5b	mRNA stability	ENSRNOG00000001098	0.19	0.08	blup	795	0.11	1.5e-03	-5.6	5.6	2.5e-08	-0.35	0.08	0.66	FALSE
50	IL	Katnal1	mRNA stability	ENSRNOG00000047618	0.13	0.09	top1	1	0.09	4.4e-03	-5.2	-5.2	2.4e-07	0.59	0.12	0.05	FALSE
51	LHb	Rxfp2	gene expression	ENSRNOG00000000897	0.27	0.17	lasso	9	0.22	4.8e-06	-6.1	-6.7	2.1e-11	0.91	0.36	0.60	FALSE
52	LHb	Zfp958l1	mRNA stability	ENSRNOG00000000891	0.41	0.13	blup	1952	0.17	8.6e-05	-1.9	5.1	3.1e-07	-0.78	0.49	0.46	FALSE
53	LHb	Fry	mRNA stability	ENSRNOG00000000894	0.34	0.21	blup	2959	0.27	3.7e-07	-3.8	-5.4	6.5e-08	0.80	0.90	0.10	FALSE
54	LHb	Brca2	mRNA stability	ENSRNOG00000001111	0.19	0.12	top1	1	0.12	9.6e-04	-5.5	5.5	3.6e-08	-0.31	0.03	0.10	FALSE
55	LHb	Insr	mRNA stability	ENSRNOG00000029986	0.59	0.26	lasso	12	0.38	7.2e-10	-5.7	5.2	2.0e-07	-0.27	0.11	0.89	FALSE
56	Liver	N4bp2l2	alternative polyA	ENSRNOT00000118063	0.10	0.04	blup	681	0.07	1.5e-08	-4.5	-5.1	3.5e-07	0.39	0.74	0.26	FALSE
57	Liver	Mcoln1	gene expression	ENSRNOG00000000975	0.09	0.04	lasso	39	0.04	1.7e-05	-5.7	5.7	1.2e-08	-0.43	0.11	0.89	FALSE
58	Liver	Timm44	gene expression	ENSRNOG00000001058	0.11	0.03	enet	10	0.04	7.4e-05	-4.4	5.1	3.0e-07	-0.54	0.63	0.34	FALSE
59	Liver	Brca2	gene expression	ENSRNOG00000001111	0.04	0.02	top1	1	0.02	1.7e-03	-5.2	5.2	1.9e-07	-0.29	0.03	0.06	TRUE
60	Liver	N4bp2l1	gene expression	ENSRNOG00000059322	0.21	0.13	enet	107	0.16	2.5e-17	-5.7	-5.4	6.9e-08	0.41	0.03	0.97	FALSE
61	Liver	Zfp958	gene expression	ENSRNOG00000065430	0.24	0.05	top1	1	0.05	7.2e-06	-5.1	5.1	2.9e-07	-0.64	0.10	0.69	FALSE
62	Liver	Stxbp2	isoform ratio	ENSRNOT00000107607	0.15	0.09	lasso	10	0.09	5.9e-10	-4.8	-5.4	8.2e-08	0.28	0.35	0.65	FALSE
63	Liver	Zfp958l1	intron excision ratio	chr12:4420448:4438512	0.04	0.02	enet	55	0.03	2.6e-04	-4.2	6.1	8.3e-10	-0.54	0.83	0.02	FALSE
64	Liver	AABR07035218.1	intron excision ratio	chr12:5974685:5975080	0.13	0.11	top1	1	0.11	4.1e-12	-5.2	5.2	1.7e-07	-0.60	0.89	0.11	FALSE
65	Liver	Insr	intron excision ratio	chr12:1257822:1307450	0.44	0.21	enet	94	0.21	3.2e-23	-5.7	5.6	1.8e-08	-0.44	0.09	0.91	FALSE
66	Liver	Zfp958	intron excision ratio	chr12:3953566:3958666	0.03	0.00	blup	1113	0.01	1.1e-02	-5.1	-5.6	1.8e-08	0.60	0.21	0.39	FALSE
67	Liver	Zfp958l1	mRNA stability	ENSRNOG00000000891	0.23	0.16	blup	1965	0.17	1.8e-18	-5.0	5.6	2.0e-08	-0.79	0.30	0.70	FALSE
68	Liver	Hsph1	mRNA stability	ENSRNOG00000000902	0.02	0.02	top1	1	0.02	2.5e-03	-6.1	-6.1	1.0e-09	0.68	0.07	0.03	FALSE
69	Liver	N4bp2l2	mRNA stability	ENSRNOG00000001108	0.03	0.02	top1	1	0.02	2.0e-03	-5.8	5.8	6.2e-09	-0.37	0.02	0.41	FALSE
70	Liver	AABR07035218.1	mRNA stability	ENSRNOG00000029813	0.53	0.31	blup	2412	0.38	6.3e-45	-2.5	5.5	4.5e-08	-0.74	0.87	0.13	FALSE
71	Liver	Insr	mRNA stability	ENSRNOG00000029986	0.69	0.39	enet	78	0.41	3.0e-48	-5.7	5.3	1.2e-07	-0.44	0.09	0.91	FALSE
72	NAcc	Zfp958l1	alternative TSS	ENSRNOT00000035992	0.05	0.05	top1	1	0.05	1.4e-04	-5.1	-5.1	2.9e-07	0.75	0.12	0.03	FALSE
73	NAcc	Zfp958l1	alternative TSS	ENSRNOT00000119165	0.05	0.05	top1	1	0.05	1.8e-04	-5.1	5.1	2.9e-07	-0.75	0.11	0.03	FALSE
74	NAcc	Pet100	alternative TSS	ENSRNOT00000071928	0.08	0.03	top1	1	0.03	1.4e-03	-5.7	5.7	1.6e-08	-0.19	0.07	0.26	FALSE
75	NAcc	Rxfp2	gene expression	ENSRNOG00000000897	0.08	0.04	blup	3309	0.06	1.4e-05	-6.1	-6.2	4.1e-10	0.75	0.91	0.08	FALSE
76	NAcc	Alox5ap	gene expression	ENSRNOG00000000907	0.06	0.07	top1	1	0.06	1.3e-05	-6.4	-6.4	1.5e-10	0.69	0.05	0.84	FALSE
77	NAcc	Stxbp2	gene expression	ENSRNOG00000000994	0.10	0.07	top1	1	0.07	9.6e-06	-5.7	-5.7	1.6e-08	0.28	0.09	0.52	FALSE
78	NAcc	Cers4	gene expression	ENSRNOG00000001072	0.27	0.25	enet	26	0.27	5.9e-20	-4.7	5.6	2.3e-08	-0.52	0.41	0.59	FALSE
79	NAcc	Lrrc8e	gene expression	ENSRNOG00000028460	0.31	0.06	lasso	12	0.07	1.2e-05	-5.4	-5.7	1.0e-08	0.44	0.02	0.96	FALSE
80	NAcc	Zfp958l1	isoform ratio	ENSRNOT00000035992	0.08	0.07	top1	1	0.07	9.5e-06	-5.1	-5.1	2.9e-07	0.76	0.33	0.03	FALSE
81	NAcc	Zfp958l1	isoform ratio	ENSRNOT00000119165	0.08	0.06	top1	1	0.06	1.4e-05	-5.1	5.1	2.9e-07	-0.77	0.28	0.03	TRUE
82	NAcc	Trappc5	isoform ratio	ENSRNOT00000001327	0.11	0.04	lasso	38	0.04	2.9e-04	-5.7	-5.7	1.5e-08	0.38	0.14	0.86	FALSE
83	NAcc	Trappc5	isoform ratio	ENSRNOT00000111016	0.09	0.02	lasso	29	0.03	5.1e-03	-5.7	5.8	8.6e-09	-0.37	0.14	0.84	FALSE
84	NAcc	Insr	intron excision ratio	chr12:1257822:1307450	0.43	0.21	enet	192	0.25	2.2e-18	-5.7	5.5	2.9e-08	-0.33	0.10	0.90	FALSE
85	NAcc	Fry	mRNA stability	ENSRNOG00000000894	0.11	0.12	top1	1	0.12	4.3e-09	-6.1	-6.1	8.1e-10	0.89	0.91	0.09	FALSE
86	NAcc	Snapc2	mRNA stability	ENSRNOG00000001056	0.13	0.07	top1	1	0.06	1.3e-05	-5.3	-5.3	1.1e-07	0.13	0.03	0.90	FALSE
87	NAcc	Brca2	mRNA stability	ENSRNOG00000001111	0.14	0.09	lasso	42	0.09	4.2e-07	-5.8	5.7	1.4e-08	-0.43	0.04	0.96	FALSE
88	NAcc	Insr	mRNA stability	ENSRNOG00000029986	0.37	0.23	lasso	29	0.23	1.8e-17	-5.7	5.7	1.0e-08	-0.42	0.10	0.90	FALSE
89	OFC	AABR07035218.1	alternative polyA	ENSRNOT00000098255	0.19	0.03	blup	2409	0.06	1.7e-02	-5.1	-5.8	7.1e-09	0.80	0.32	0.58	FALSE
90	OFC	AABR07035218.1	alternative polyA	ENSRNOT00000089476	0.17	0.02	blup	2409	0.06	1.3e-02	-5.1	5.3	1.0e-07	-0.77	0.40	0.50	FALSE
91	OFC	AABR07035218.1	alternative polyA	ENSRNOT00000098255	0.23	0.05	blup	2409	0.12	9.8e-04	-6.2	-5.5	3.1e-08	0.78	0.38	0.57	FALSE
92	OFC	Rxfp2	gene expression	ENSRNOG00000000897	0.67	0.19	enet	28	0.29	1.1e-07	-4.0	-6.2	6.0e-10	0.80	0.97	0.02	FALSE
93	OFC	Hsph1	gene expression	ENSRNOG00000000902	0.12	0.09	top1	1	0.09	3.1e-03	-6.8	6.8	8.0e-12	-0.75	0.12	0.11	FALSE
94	OFC	Stxbp2	gene expression	ENSRNOG00000000994	0.43	0.14	top1	1	0.14	2.8e-04	-5.6	-5.6	1.8e-08	0.34	0.09	0.09	FALSE
95	OFC	Snapc2	gene expression	ENSRNOG00000001056	0.54	0.04	blup	2272	0.12	1.0e-03	-4.5	-5.9	2.9e-09	0.55	0.31	0.41	FALSE
96	OFC	B3glct	gene expression	ENSRNOG00000061346	0.36	0.33	blup	2634	0.45	5.9e-12	-6.3	5.7	1.1e-08	-0.81	0.54	0.46	FALSE
97	OFC	NA	gene expression	ENSRNOG00000069263	0.24	0.12	top1	1	0.12	1.0e-03	-5.1	-5.1	2.8e-07	0.65	0.15	0.05	FALSE
98	OFC	Insr	intron excision ratio	chr12:1257822:1307450	0.64	0.28	top1	1	0.28	2.2e-07	-5.4	5.4	6.8e-08	-0.47	0.23	0.41	FALSE
99	OFC	Zfp958l1	mRNA stability	ENSRNOG00000000891	0.45	0.09	enet	20	0.20	2.2e-05	-3.4	-7.6	2.5e-14	0.77	0.47	0.44	TRUE
100	OFC	Fry	mRNA stability	ENSRNOG00000000894	0.30	0.25	top1	1	0.25	1.6e-06	-6.1	-6.1	1.1e-09	0.89	0.21	0.05	FALSE
101	OFC	Insr	mRNA stability	ENSRNOG00000029986	0.82	0.37	top1	1	0.37	1.0e-09	-5.7	5.7	1.6e-08	-0.36	0.11	0.86	FALSE
102	PL	Zfp958	alternative TSS	ENSRNOT00000104360	0.10	0.05	top1	1	0.05	1.1e-04	-5.2	-5.2	1.7e-07	0.65	0.05	0.43	FALSE
103	PL	Stxbp2	gene expression	ENSRNOG00000000994	0.13	0.05	blup	1819	0.06	2.6e-05	-4.6	-5.4	8.7e-08	0.33	0.79	0.21	FALSE
104	PL	NA	gene expression	ENSRNOG00000067247	0.10	0.07	blup	2289	0.07	3.7e-06	-5.2	5.8	8.4e-09	-0.77	0.16	0.84	FALSE
105	PL	Insr	intron excision ratio	chr12:1257822:1307450	0.58	0.32	enet	216	0.38	1.3e-30	-5.7	5.5	4.6e-08	-0.38	0.10	0.90	FALSE
106	PL	Fry	mRNA stability	ENSRNOG00000000894	0.17	0.13	lasso	5	0.13	2.6e-10	-6.0	-5.9	4.2e-09	0.80	0.92	0.08	FALSE
107	PL	Insr	mRNA stability	ENSRNOG00000029986	0.65	0.46	lasso	32	0.49	2.3e-42	-5.7	5.7	9.6e-09	-0.39	0.10	0.90	FALSE
108	PL	Katnal1	mRNA stability	ENSRNOG00000047618	0.09	0.08	lasso	5	0.09	5.0e-07	-4.9	-5.6	2.8e-08	0.80	0.20	0.80	FALSE
109	PL	B3glct	mRNA stability	ENSRNOG00000061346	0.18	0.05	enet	207	0.08	1.8e-06	-3.3	5.2	2.5e-07	-0.80	0.80	0.20	TRUE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.