Best TWAS P = 2.61e-09 · Best GWAS P= 2.79e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Dhx16 | alternative polyA | XM_039098480.2 | 0.1 | 1 | 0.07 | 1.4e-08 | -5.29 | 1.20e-07 | 0.76 | FALSE |
| Adipose | Dhx16 | alternative polyA | XM_039098480.2 | 0.11 | 1 | 0.09 | 1.1e-09 | -5.29 | 1.24e-07 | 0.76 | FALSE |
| Adipose | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.35 | 13 | 0.3 | 9.7e-34 | 5.5 | 3.88e-08 | 0.78 | FALSE |
| Adipose | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.4 | 14 | 0.55 | 3.0e-72 | -5.25 | 1.56e-07 | 0.75 | FALSE |
| Adipose | RT1-N2 | alternative TSS | NM_001008854.2 | 0.37 | 25 | 0.39 | 4.1e-46 | -5.23 | 1.71e-07 | 0.73 | FALSE |
| Adipose | RT1-N2 | alternative TSS | XM_039098781.2 | 0.44 | 4 | 0.42 | 8.8e-50 | 5.21 | 1.84e-07 | 0.73 | FALSE |
| Adipose | RT1-N2 | alternative TSS | XM_039098784.2 | 0.12 | 9 | 0.09 | 1.6e-10 | 5.38 | 7.51e-08 | 0.73 | FALSE |
| Adipose | Ddr1 | gene expression | Ddr1 | 0.66 | 21 | 0.67 | 1.1e-101 | 5.28 | 1.31e-07 | 0.72 | FALSE |
| Adipose | Flot1 | gene expression | Flot1 | 0.21 | 13 | 0.23 | 3.6e-25 | 5.24 | 1.58e-07 | 0.25 | FALSE |
| Adipose | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.39 | 260 | 0.49 | 4.1e-62 | -5.27 | 1.34e-07 | 0.75 | FALSE |
| Adipose | LOC134483849 | gene expression | LOC134483849 | 0.42 | 27 | 0.44 | 2.1e-53 | 5.28 | 1.29e-07 | 0.72 | FALSE |
| Adipose | RT1-N2 | gene expression | RT1-N2 | 0.69 | 258 | 0.69 | 1.3e-106 | 5.26 | 1.47e-07 | 0.73 | FALSE |
| Adipose | RT1-O1l1 | gene expression | RT1-O1l1 | 0.54 | 13 | 0.68 | 2.0e-103 | -5.22 | 1.77e-07 | 0.75 | FALSE |
| Adipose | Dhx16 | isoform ratio | XM_039098480.2 | 0.1 | 1524 | 0.08 | 2.2e-09 | -5.25 | 1.51e-07 | 0.7 | FALSE |
| Adipose | Nrm | isoform ratio | XM_039098800.2 | 0.09 | 1524 | 0.08 | 6.5e-09 | 5.22 | 1.82e-07 | 0.69 | FALSE |
| Adipose | RT1-N2 | isoform ratio | XM_039098785.2 | 0.56 | 5 | 0.5 | 1.4e-63 | -5.2 | 1.95e-07 | 0.73 | FALSE |
| Adipose | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.43 | 223 | 0.55 | 7.6e-73 | 5.32 | 1.06e-07 | 0.75 | FALSE |
| Adipose | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.45 | 252 | 0.56 | 7.8e-75 | -5.3 | 1.14e-07 | 0.75 | FALSE |
| Adipose | RT1-T24-4 | isoform ratio | XM_063279397.1 | 0.41 | 12 | 0.21 | 5.6e-23 | -5.47 | 4.55e-08 | 0.72 | FALSE |
| BLA | Dhx16 | alternative polyA | XM_039098481.2 | 0.07 | 1 | 0.02 | 2.1e-02 | 5.24 | 1.61e-07 | 0.04 | FALSE |
| BLA | Cchcr1 | alternative TSS | NM_001002822.2 | 0.14 | 1 | 0.07 | 1.6e-04 | 5.27 | 1.37e-07 | 0.25 | FALSE |
| BLA | Cchcr1 | alternative TSS | NM_001002822.2 | 0.13 | 1 | 0.06 | 2.4e-04 | 5.27 | 1.37e-07 | 0.21 | FALSE |
| BLA | RT1-N2 | alternative TSS | NM_001008854.2 | 0.23 | 16 | 0.16 | 5.2e-09 | -5.22 | 1.75e-07 | 0.64 | FALSE |
| BLA | RT1-N2 | alternative TSS | XM_039098781.2 | 0.19 | 1195 | 0.12 | 9.5e-07 | 5.28 | 1.29e-07 | 0.64 | FALSE |
| BLA | Abcf1 | gene expression | Abcf1 | 0.46 | 1500 | 0.31 | 9.8e-17 | -5.95 | 2.61e-09 | 0.7 | TRUE |
| BLA | Cchcr1 | gene expression | Cchcr1 | 0.86 | 64 | 0.66 | 4.0e-46 | 5.23 | 1.70e-07 | 0.73 | FALSE |
| BLA | Cdsn | gene expression | Cdsn | 0.18 | 1 | 0.14 | 9.3e-08 | 5.23 | 1.66e-07 | 0.71 | FALSE |
| BLA | LOC134483846 | gene expression | LOC134483846 | 0.79 | 43 | 0.71 | 4.3e-52 | 5.25 | 1.54e-07 | 0.7 | FALSE |
| BLA | RT1-S2 | gene expression | RT1-S2 | 0.65 | 65 | 0.62 | 6.6e-41 | 5.25 | 1.48e-07 | 0.72 | TRUE |
| BLA | RT1-T24-2 | gene expression | RT1-T24-2 | 0.08 | 1416 | 0.05 | 1.4e-03 | 5.25 | 1.56e-07 | 0.6 | FALSE |
| BLA | Cchcr1 | isoform ratio | XM_063279369.1 | 0.06 | 48 | 0.04 | 3.6e-03 | 5.51 | 3.65e-08 | 0.53 | TRUE |
| BLA | Dhx16 | isoform ratio | NM_212496.2 | 0.13 | 1524 | 0.09 | 2.3e-05 | 5.24 | 1.59e-07 | 0.64 | FALSE |
| BLA | Dhx16 | isoform ratio | XM_039098481.2 | 0.08 | 1524 | 0.03 | 1.3e-02 | -5.34 | 9.34e-08 | 0.53 | FALSE |
| BLA | Rpp21 | isoform ratio | NM_001002831.1 | 0.07 | 1 | 0.05 | 1.3e-03 | -5.44 | 5.33e-08 | 0.16 | FALSE |
| BLA | RT1-N2 | isoform ratio | XM_017601671.3 | 0.3 | 1195 | 0.13 | 2.3e-07 | 5.28 | 1.32e-07 | 0.67 | FALSE |
| BLA | RT1-N2 | isoform ratio | XM_039098783.2 | 0.19 | 1195 | 0.14 | 8.4e-08 | 5.23 | 1.67e-07 | 0.72 | FALSE |
| BLA | RT1-N2 | isoform ratio | XM_039098785.2 | 0.49 | 1195 | 0.42 | 9.2e-24 | -5.25 | 1.55e-07 | 0.72 | FALSE |
| BLA | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.5 | 1156 | 0.44 | 2.7e-25 | -5.22 | 1.80e-07 | 0.72 | FALSE |
| BLA | RT1-S2 | isoform ratio | NM_001008857.1 | 0.12 | 2 | 0.07 | 8.6e-05 | 5.28 | 1.31e-07 | 0.7 | FALSE |
| BLA | RT1-S2 | isoform ratio | XM_063278970.1 | 0.12 | 1 | 0.07 | 1.1e-04 | -5.28 | 1.30e-07 | 0.36 | FALSE |
| BLA | RT1-T18 | isoform ratio | XR_010060736.1 | 0.14 | 29 | 0.09 | 1.7e-05 | -5.22 | 1.82e-07 | 0.72 | FALSE |
| BLA | Flot1 | intron excision ratio | chr20_2932310_2932607 | 0.12 | 1 | 0.05 | 1.2e-03 | 5.26 | 1.46e-07 | 0.07 | FALSE |
| BLA | LOC134483846 | intron excision ratio | chr20_2651165_2659663 | 0.73 | 51 | 0.4 | 8.8e-23 | 5.28 | 1.26e-07 | 0.7 | FALSE |
| BLA | Dhx16 | mRNA stability | Dhx16 | 0.25 | 13 | 0.25 | 2.1e-13 | 5.24 | 1.60e-07 | 0.71 | FALSE |
| BLA | H2-M10.6l | mRNA stability | H2-M10.6l | 0.35 | 1 | 0.22 | 4.1e-12 | 5.44 | 5.20e-08 | 0.97 | FALSE |
| BLA | LOC134483846 | mRNA stability | LOC134483846 | 0.81 | 1390 | 0.64 | 2.6e-43 | 5.23 | 1.69e-07 | 0.7 | FALSE |
| Brain | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.45 | 79 | 0.47 | 3.3e-48 | 5.22 | 1.79e-07 | 0.74 | FALSE |
| Brain | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.54 | 163 | 0.54 | 1.7e-59 | -5.24 | 1.64e-07 | 0.74 | FALSE |
| Brain | RT1-S2 | alternative polyA | NM_001008857.1 | 0.1 | 12 | 0.06 | 4.4e-06 | 5.31 | 1.08e-07 | 0.73 | FALSE |
| Brain | RT1-S2 | alternative polyA | XM_063278970.1 | 0.1 | 13 | 0.06 | 4.8e-06 | -5.31 | 1.09e-07 | 0.73 | FALSE |
| Brain | RT1-T24-3 | alternative polyA | XM_063279403.1 | 0.16 | 4 | 0.12 | 2.8e-11 | -5.23 | 1.68e-07 | 0.67 | FALSE |
| Brain | RT1-T24-3 | alternative TSS | NM_001166403.1 | 0.07 | 1 | 0.06 | 1.2e-06 | -5.24 | 1.62e-07 | 0.67 | FALSE |
| Brain | Abcf1 | gene expression | Abcf1 | 0.41 | 11 | 0.38 | 2.4e-37 | -5.22 | 1.77e-07 | 0.71 | FALSE |
| Brain | Ddr1 | gene expression | Ddr1 | 0.14 | 1 | 0.11 | 1.3e-10 | 5.24 | 1.60e-07 | 0.71 | FALSE |
| Brain | Gtf2h4 | gene expression | Gtf2h4 | 0.14 | 1 | 0.11 | 5.3e-10 | 5.22 | 1.84e-07 | 0.68 | FALSE |
| Brain | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.33 | 20 | 0.32 | 1.2e-30 | -5.23 | 1.70e-07 | 0.74 | FALSE |
| Brain | LOC134483844 | gene expression | LOC134483844 | 0.57 | 1 | 0.19 | 1.5e-17 | -5.28 | 1.29e-07 | 0.92 | TRUE |
| Brain | RT1-O1l1 | gene expression | RT1-O1l1 | 0.56 | 73 | 0.62 | 1.6e-72 | -5.25 | 1.52e-07 | 0.74 | FALSE |
| Brain | RT1-T18 | gene expression | RT1-T18 | 0.48 | 30 | 0.58 | 7.2e-67 | -5.22 | 1.76e-07 | 0.75 | FALSE |
| Brain | RT1-N2 | isoform ratio | XM_039098785.2 | 0.74 | 40 | 0.54 | 6.2e-60 | -5.23 | 1.74e-07 | 0.72 | FALSE |
| Brain | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.54 | 61 | 0.66 | 6.0e-82 | 5.21 | 1.89e-07 | 0.74 | FALSE |
| Brain | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.55 | 101 | 0.65 | 2.7e-79 | -5.24 | 1.60e-07 | 0.74 | FALSE |
| Brain | RT1-S2 | isoform ratio | XM_063278970.1 | 0.26 | 28 | 0.23 | 2.6e-21 | -5.23 | 1.74e-07 | 0.72 | TRUE |
| Brain | RT1-T18 | isoform ratio | XR_010060737.1 | 0.47 | 1 | 0.1 | 1.5e-09 | 5.3 | 1.16e-07 | 0.8 | FALSE |
| Brain | RT1-T24-3 | isoform ratio | XM_063279402.1 | 0.06 | 1 | 0.06 | 7.1e-06 | 5.44 | 5.20e-08 | 0.78 | FALSE |
| Brain | Dhx16 | intron excision ratio | chr20_2868393_2869501 | 0.21 | 1524 | 0.09 | 2.7e-08 | 5.25 | 1.53e-07 | 0.69 | FALSE |
| Brain | Cchcr1 | mRNA stability | Cchcr1 | 0.34 | 1 | 0.37 | 1.4e-35 | -5.21 | 1.90e-07 | 0.69 | FALSE |
| Brain | Dhx16 | mRNA stability | Dhx16 | 0.46 | 46 | 0.63 | 4.8e-75 | 5.24 | 1.62e-07 | 0.71 | FALSE |
| Eye | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.65 | 1156 | 0.15 | 3.1e-03 | 5.23 | 1.69e-07 | 0.38 | FALSE |
| Eye | LOC134483846 | gene expression | LOC134483846 | 0.67 | 1390 | 0.24 | 1.5e-04 | 5.23 | 1.73e-07 | 0.49 | FALSE |
| Eye | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.69 | 1156 | 0.29 | 2.4e-05 | 5.24 | 1.62e-07 | 0.6 | FALSE |
| IC | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.5 | 1156 | 0.28 | 5.4e-12 | -5.21 | 1.92e-07 | 0.73 | FALSE |
| IC | Trim26 | alternative polyA | NM_001011665.3 | 0.39 | 1 | 0.24 | 1.9e-10 | -5.44 | 5.20e-08 | 0.97 | FALSE |
| IC | Trim26 | alternative polyA | XM_039098637.2 | 0.38 | 1 | 0.24 | 1.5e-10 | 5.44 | 5.20e-08 | 0.97 | FALSE |
| IC | LOC134483844 | gene expression | LOC134483844 | 0.89 | 1 | 0.28 | 4.1e-12 | -5.24 | 1.64e-07 | 0.9 | FALSE |
| IC | LOC134483846 | gene expression | LOC134483846 | 0.85 | 46 | 0.51 | 1.1e-24 | 5.24 | 1.59e-07 | 0.7 | FALSE |
| IC | Abcf1 | isoform ratio | NM_001109883.2 | 0.31 | 1500 | 0.2 | 9.2e-09 | 5.28 | 1.30e-07 | 0.59 | FALSE |
| IC | Abcf1 | isoform ratio | XM_017601783.3 | 0.32 | 1500 | 0.2 | 8.4e-09 | -5.28 | 1.27e-07 | 0.6 | FALSE |
| IC | RT1-N3 | isoform ratio | XM_039098420.2 | 0.09 | 17 | 0.04 | 5.7e-03 | -5.28 | 1.26e-07 | 0.48 | FALSE |
| IC | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.57 | 34 | 0.42 | 4.1e-19 | 5.26 | 1.44e-07 | 0.74 | FALSE |
| IC | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.57 | 21 | 0.42 | 7.9e-19 | -5.27 | 1.39e-07 | 0.74 | FALSE |
| IC | Trim26 | isoform ratio | NM_001011665.3 | 0.36 | 1 | 0.27 | 1.1e-11 | -5.44 | 5.20e-08 | 0.97 | FALSE |
| IC | Dhx16 | intron excision ratio | chr20_2868393_2869501 | 0.14 | 1524 | 0.01 | 1.4e-01 | 5.41 | 6.32e-08 | 0.3 | FALSE |
| IC | RT1-T24-1 | intron excision ratio | chr20_2696283_2696461 | 0.23 | 12 | 0.09 | 1.4e-04 | 5.23 | 1.66e-07 | 0.68 | FALSE |
| IC | RT1-T24-3 | intron excision ratio | chr20_2729559_2730008 | 0.13 | 1390 | 0.04 | 1.3e-02 | -5.27 | 1.36e-07 | 0.37 | FALSE |
| IC | RT1-T24-4 | intron excision ratio | chr20_2696283_2696461 | 0.27 | 1 | 0.09 | 1.5e-04 | 5.27 | 1.39e-07 | 0.23 | FALSE |
| IL | RT1-N2 | alternative polyA | XM_039098781.2 | 0.53 | 1 | 0.24 | 1.5e-06 | 5.29 | 1.24e-07 | 0.2 | FALSE |
| IL | RT1-T24-4 | alternative polyA | XM_063279390.1 | 0.27 | 1357 | 0.12 | 7.5e-04 | -5.22 | 1.80e-07 | 0.48 | FALSE |
| IL | RT1-T24-4 | alternative polyA | XM_063279395.1 | 0.23 | 1357 | 0.11 | 1.7e-03 | 5.22 | 1.78e-07 | 0.44 | FALSE |
| IL | Abcf1 | gene expression | Abcf1 | 0.3 | 1500 | 0.13 | 4.9e-04 | -5.3 | 1.15e-07 | 0.59 | FALSE |
| IL | Cdsn | gene expression | Cdsn | 0.28 | 1 | 0.14 | 2.7e-04 | 5.32 | 1.05e-07 | 0.1 | FALSE |
| IL | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.61 | 17 | 0.42 | 2.1e-11 | -5.29 | 1.21e-07 | 0.73 | FALSE |
| IL | LOC134483846 | gene expression | LOC134483846 | 0.89 | 14 | 0.55 | 1.2e-15 | 5.32 | 1.03e-07 | 0.71 | FALSE |
| IL | RT1-M1-2 | gene expression | RT1-M1-2 | 0.78 | 1799 | 0.45 | 2.3e-12 | 5.21 | 1.86e-07 | 0.69 | FALSE |
| IL | RT1-S2 | gene expression | RT1-S2 | 0.74 | 1208 | 0.46 | 2.2e-12 | 5.22 | 1.77e-07 | 0.69 | FALSE |
| IL | Tcf19 | gene expression | Tcf19 | 0.36 | 1 | 0.26 | 4.6e-07 | 5.41 | 6.30e-08 | 0.38 | FALSE |
| IL | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.42 | 1 | 0.26 | 6.9e-07 | 5.23 | 1.72e-07 | 0.3 | FALSE |
| IL | RT1-S2 | isoform ratio | NM_001008857.1 | 0.15 | 1 | 0.1 | 2.4e-03 | 5.54 | 3.00e-08 | 0.43 | FALSE |
| IL | Trim26 | isoform ratio | NM_001011665.3 | 0.42 | 133 | 0.27 | 2.6e-07 | -5.24 | 1.65e-07 | 0.58 | FALSE |
| IL | LOC134483846 | intron excision ratio | chr20_2651165_2659663 | 0.76 | 19 | 0.44 | 4.8e-12 | 5.23 | 1.69e-07 | 0.69 | FALSE |
| IL | Dhx16 | mRNA stability | Dhx16 | 0.52 | 3 | 0.33 | 1.1e-08 | 5.46 | 4.74e-08 | 0.69 | FALSE |
| IL | H2-M10.6l | mRNA stability | H2-M10.6l | 0.73 | 1 | 0.44 | 6.9e-12 | 5.42 | 5.99e-08 | 0.96 | FALSE |
| IL | LOC134483846 | mRNA stability | LOC134483846 | 0.9 | 23 | 0.69 | 3.0e-22 | 5.42 | 5.83e-08 | 0.67 | FALSE |
| LHb | RT1-N2 | alternative polyA | XM_039098782.2 | 0.53 | 1195 | 0.31 | 5.4e-08 | 5.29 | 1.25e-07 | 0.63 | FALSE |
| LHb | RT1-N2 | alternative polyA | XM_039098782.2 | 0.41 | 12 | 0.32 | 2.8e-08 | 5.26 | 1.44e-07 | 0.67 | FALSE |
| LHb | RT1-S2 | alternative polyA | NM_001008857.1 | 0.39 | 8 | 0.25 | 1.1e-06 | 5.46 | 4.87e-08 | 0.69 | FALSE |
| LHb | RT1-S2 | alternative polyA | XM_063278970.1 | 0.38 | 10 | 0.24 | 1.8e-06 | -5.46 | 4.80e-08 | 0.69 | FALSE |
| LHb | RT1-CE4 | gene expression | RT1-CE4 | 0.43 | 1 | 0.1 | 1.9e-03 | 5.33 | 9.77e-08 | 0.07 | TRUE |
| LHb | RT1-O1l1 | gene expression | RT1-O1l1 | 0.72 | 1156 | 0.45 | 4.7e-12 | -5.24 | 1.63e-07 | 0.67 | FALSE |
| LHb | RT1-S2 | isoform ratio | XM_063278970.1 | 0.44 | 12 | 0.28 | 2.0e-07 | -5.32 | 1.02e-07 | 0.67 | FALSE |
| LHb | RT1-CE10 | intron excision ratio | chr20_3302480_3382202 | 0.48 | 13 | 0.18 | 5.9e-05 | -5.27 | 1.40e-07 | 0.73 | FALSE |
| LHb | RT1-CE11 | intron excision ratio | chr20_3302480_3382202 | 0.48 | 14 | 0.18 | 5.7e-05 | -5.26 | 1.41e-07 | 0.73 | FALSE |
| LHb | RT1-CE14 | intron excision ratio | chr20_3302480_3382202 | 0.42 | 14 | 0.18 | 5.6e-05 | -5.27 | 1.37e-07 | 0.69 | FALSE |
| Liver | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.52 | 12 | 0.6 | 3.1e-84 | -5.24 | 1.62e-07 | 0.75 | FALSE |
| Liver | LOC134483848 | gene expression | LOC134483848 | 0.04 | 1489 | 0.03 | 2.8e-04 | -5.21 | 1.91e-07 | 0.62 | FALSE |
| Liver | RT1-N2 | isoform ratio | XM_017601671.3 | 0.45 | 17 | 0.34 | 6.4e-39 | 5.25 | 1.54e-07 | 0.73 | FALSE |
| Liver | RT1-N2 | isoform ratio | XM_039098783.2 | 0.41 | 19 | 0.4 | 1.4e-47 | 5.24 | 1.60e-07 | 0.73 | FALSE |
| Liver | RT1-N2 | isoform ratio | XM_039098785.2 | 0.63 | 15 | 0.51 | 5.8e-65 | -5.35 | 8.91e-08 | 0.74 | FALSE |
| Liver | LOC134483846 | intron excision ratio | chr20_2687789_2696130 | 0.31 | 29 | 0.06 | 6.1e-07 | -5.28 | 1.27e-07 | 0.71 | FALSE |
| Liver | LOC134483846 | intron excision ratio | chr20_2709656_2712862 | 0.53 | 1 | 0.04 | 2.7e-05 | 5.23 | 1.72e-07 | 0.56 | FALSE |
| Liver | LOC134483846 | intron excision ratio | chr20_2709656_2735001 | 0.54 | 1 | 0.04 | 2.2e-05 | 5.23 | 1.72e-07 | 0.58 | FALSE |
| NAcc | RT1-CE3 | alternative polyA | XM_039098964.2 | 0.16 | 3129 | 0.09 | 2.2e-13 | 5.38 | 7.63e-08 | 0.84 | FALSE |
| NAcc | RT1-N2 | alternative polyA | XM_039098782.2 | 0.45 | 24 | 0.28 | 8.7e-42 | 5.35 | 8.64e-08 | 0.76 | FALSE |
| NAcc | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.37 | 102 | 0.52 | 2.7e-92 | -5.24 | 1.58e-07 | 0.74 | FALSE |
| NAcc | RT1-S2 | alternative polyA | NM_001008857.1 | 0.08 | 1 | 0.07 | 5.7e-11 | 5.55 | 2.79e-08 | 0.93 | FALSE |
| NAcc | RT1-S2 | alternative polyA | XM_063278970.1 | 0.08 | 1 | 0.07 | 2.0e-10 | -5.55 | 2.79e-08 | 0.93 | FALSE |
| NAcc | Prr3 | alternative TSS | XM_063279199.1 | 0.03 | 1496 | 0.02 | 4.4e-04 | 5.42 | 5.92e-08 | 0.66 | FALSE |
| NAcc | RT1-N2 | alternative TSS | NM_001008854.2 | 0.15 | 66 | 0.11 | 4.7e-16 | -5.3 | 1.16e-07 | 0.63 | FALSE |
| NAcc | RT1-N2 | alternative TSS | XM_039098781.2 | 0.11 | 1195 | 0.1 | 1.9e-15 | 5.27 | 1.39e-07 | 0.69 | FALSE |
| NAcc | RT1-T18 | alternative TSS | XM_063279363.1 | 0.11 | 1 | 0.14 | 6.3e-21 | -5.25 | 1.53e-07 | 0.76 | FALSE |
| NAcc | RT1-T18 | alternative TSS | XM_063279365.1 | 0.11 | 1 | 0.15 | 7.5e-22 | -5.25 | 1.53e-07 | 0.76 | FALSE |
| NAcc | Ddr1 | gene expression | Ddr1 | 0.13 | 13 | 0.16 | 1.5e-23 | 5.24 | 1.61e-07 | 0.72 | FALSE |
| NAcc | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.29 | 23 | 0.37 | 1.3e-58 | -5.33 | 9.83e-08 | 0.74 | FALSE |
| NAcc | LOC134483846 | gene expression | LOC134483846 | 0.67 | 86 | 0.78 | 1.0e-189 | 5.24 | 1.59e-07 | 0.71 | FALSE |
| NAcc | RT1-O1l1 | gene expression | RT1-O1l1 | 0.64 | 66 | 0.71 | 1.2e-153 | -5.31 | 1.07e-07 | 0.74 | FALSE |
| NAcc | RT1-T18 | gene expression | RT1-T18 | 0.46 | 77 | 0.65 | 9.9e-133 | -5.24 | 1.63e-07 | 0.75 | FALSE |
| NAcc | RT1-T24-4 | gene expression | RT1-T24-4 | 0.05 | 1357 | 0.04 | 9.0e-07 | 5.25 | 1.56e-07 | 0.66 | FALSE |
| NAcc | Dhx16 | isoform ratio | XM_039098480.2 | 0.08 | 1524 | 0.1 | 4.9e-15 | -5.31 | 1.12e-07 | 0.71 | FALSE |
| NAcc | RT1-N2 | isoform ratio | XM_039098785.2 | 0.37 | 28 | 0.4 | 2.4e-65 | -5.3 | 1.15e-07 | 0.72 | FALSE |
| NAcc | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.34 | 100 | 0.5 | 1.3e-86 | -5.23 | 1.69e-07 | 0.73 | FALSE |
| NAcc | LOC134483846 | intron excision ratio | chr20_2651165_2659663 | 0.61 | 58 | 0.6 | 5.7e-114 | 5.23 | 1.70e-07 | 0.7 | FALSE |
| NAcc | RT1-T24-3 | intron excision ratio | chr20_2693808_2695740 | 0.06 | 11 | 0.04 | 5.4e-07 | -5.34 | 9.35e-08 | 0.7 | FALSE |
| NAcc | RT1-T24-4 | intron excision ratio | chr20_2693808_2695740 | 0.06 | 11 | 0.04 | 5.3e-07 | -5.34 | 9.42e-08 | 0.71 | FALSE |
| NAcc | Dhx16 | mRNA stability | Dhx16 | 0.19 | 6 | 0.26 | 3.9e-39 | 5.31 | 1.11e-07 | 0.72 | FALSE |
| NAcc | LOC134483846 | mRNA stability | LOC134483846 | 0.65 | 50 | 0.66 | 2.6e-134 | 5.21 | 1.93e-07 | 0.71 | FALSE |
| OFC | Dhx16 | alternative polyA | NM_212496.2 | 0.2 | 6 | 0.14 | 3.3e-04 | 5.3 | 1.15e-07 | 0.59 | FALSE |
| OFC | Dhx16 | alternative polyA | XM_039098480.2 | 0.29 | 1 | 0.25 | 1.4e-06 | -5.41 | 6.30e-08 | 0.32 | FALSE |
| OFC | Dhx16 | alternative polyA | XM_039098480.2 | 0.32 | 1 | 0.26 | 6.3e-07 | -5.41 | 6.30e-08 | 0.41 | FALSE |
| OFC | RT1-N2 | alternative polyA | XM_039098782.2 | 0.46 | 1 | 0.36 | 2.5e-09 | 5.29 | 1.23e-07 | 0.69 | FALSE |
| OFC | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.42 | 1 | 0.4 | 1.6e-10 | 5.41 | 6.30e-08 | 0.83 | FALSE |
| OFC | RT1-T24-3 | alternative polyA | XM_063279403.1 | 0.28 | 4 | 0.21 | 1.0e-05 | -5.27 | 1.38e-07 | 0.43 | FALSE |
| OFC | RT1-T24-3 | alternative polyA | XM_063279403.1 | 0.38 | 3 | 0.3 | 8.0e-08 | -5.42 | 5.98e-08 | 0.36 | TRUE |
| OFC | RT1-M1-4 | alternative TSS | XM_063278995.1 | 0.2 | 1 | 0.14 | 3.7e-04 | -5.44 | 5.33e-08 | 0.4 | FALSE |
| OFC | Abcf1 | gene expression | Abcf1 | 0.66 | 1 | 0.47 | 1.4e-12 | -5.55 | 2.79e-08 | 0.93 | FALSE |
| OFC | Ddr1 | gene expression | Ddr1 | 0.34 | 28 | 0.19 | 2.8e-05 | 5.27 | 1.39e-07 | 0.4 | FALSE |
| OFC | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.61 | 31 | 0.41 | 8.2e-11 | -5.28 | 1.27e-07 | 0.71 | FALSE |
| OFC | LOC134483844 | gene expression | LOC134483844 | 0.69 | 1 | 0.23 | 4.4e-06 | -5.33 | 9.79e-08 | 0.54 | FALSE |
| OFC | LOC134483846 | gene expression | LOC134483846 | 0.82 | 21 | 0.52 | 2.0e-14 | 5.3 | 1.14e-07 | 0.71 | FALSE |
| OFC | RT1-O1l1 | gene expression | RT1-O1l1 | 0.73 | 20 | 0.46 | 1.6e-12 | -5.41 | 6.45e-08 | 0.69 | FALSE |
| OFC | RT1-T18 | gene expression | RT1-T18 | 0.7 | 27 | 0.41 | 9.9e-11 | -5.27 | 1.33e-07 | 0.74 | FALSE |
| OFC | Tcf19 | gene expression | Tcf19 | 0.26 | 1 | 0.16 | 1.5e-04 | 5.55 | 2.79e-08 | 0.18 | FALSE |
| OFC | Dhx16 | isoform ratio | NM_212496.2 | 0.28 | 1 | 0.27 | 4.8e-07 | 5.24 | 1.58e-07 | 0.17 | FALSE |
| OFC | Dhx16 | isoform ratio | XM_039098480.2 | 0.29 | 1 | 0.27 | 5.0e-07 | -5.55 | 2.79e-08 | 0.5 | FALSE |
| OFC | RT1-N2 | isoform ratio | XM_039098783.2 | 0.55 | 23 | 0.42 | 5.1e-11 | 5.28 | 1.30e-07 | 0.65 | FALSE |
| OFC | RT1-N2 | isoform ratio | XM_039098785.2 | 0.52 | 10 | 0.4 | 1.9e-10 | -5.25 | 1.53e-07 | 0.7 | FALSE |
| PL | RT1-N2 | alternative polyA | XM_039098782.2 | 0.59 | 39 | 0.33 | 6.2e-37 | 5.28 | 1.26e-07 | 0.74 | TRUE |
| PL | RT1-N2 | alternative polyA | XM_039098782.2 | 0.61 | 37 | 0.31 | 6.9e-35 | 5.3 | 1.13e-07 | 0.76 | TRUE |
| PL | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.35 | 39 | 0.46 | 2.2e-55 | 5.24 | 1.61e-07 | 0.75 | FALSE |
| PL | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.61 | 49 | 0.62 | 1.8e-86 | -5.35 | 8.67e-08 | 0.75 | FALSE |
| PL | RT1-T18 | alternative TSS | XM_063279363.1 | 0.12 | 14 | 0.16 | 1.8e-17 | -5.21 | 1.90e-07 | 0.76 | FALSE |
| PL | RT1-T18 | alternative TSS | XM_063279365.1 | 0.14 | 1 | 0.2 | 2.3e-21 | -5.27 | 1.37e-07 | 0.78 | FALSE |
| PL | Abcf1 | gene expression | Abcf1 | 0.33 | 9 | 0.41 | 6.9e-48 | -5.3 | 1.16e-07 | 0.71 | FALSE |
| PL | Ddr1 | gene expression | Ddr1 | 0.1 | 1 | 0.13 | 5.8e-14 | 5.29 | 1.23e-07 | 0.76 | FALSE |
| PL | Gtf2h4 | gene expression | Gtf2h4 | 0.11 | 1495 | 0.13 | 1.0e-13 | 5.38 | 7.58e-08 | 0.71 | FALSE |
| PL | H2-Q7-ps1 | gene expression | H2-Q7-ps1 | 0.48 | 36 | 0.57 | 9.6e-75 | -5.25 | 1.53e-07 | 0.74 | FALSE |
| PL | RT1-S2 | gene expression | RT1-S2 | 0.57 | 38 | 0.71 | 1.9e-109 | 5.23 | 1.66e-07 | 0.72 | FALSE |
| PL | RT1-T18 | gene expression | RT1-T18 | 0.49 | 43 | 0.69 | 1.6e-105 | -5.24 | 1.57e-07 | 0.75 | FALSE |
| PL | Dhx16 | isoform ratio | NM_212496.2 | 0.04 | 1524 | 0.03 | 2.4e-04 | 5.24 | 1.57e-07 | 0.65 | FALSE |
| PL | RT1-N2 | isoform ratio | XM_017601671.3 | 0.25 | 1195 | 0.22 | 5.1e-24 | 5.26 | 1.46e-07 | 0.72 | FALSE |
| PL | RT1-N2 | isoform ratio | XM_039098785.2 | 0.37 | 24 | 0.54 | 1.5e-70 | -5.23 | 1.68e-07 | 0.72 | FALSE |
| PL | RT1-O1l1 | isoform ratio | XM_039099255.2 | 0.45 | 34 | 0.58 | 8.1e-78 | 5.25 | 1.55e-07 | 0.74 | FALSE |
| PL | RT1-O1l1 | isoform ratio | XM_039099257.2 | 0.54 | 48 | 0.62 | 3.2e-86 | -5.3 | 1.18e-07 | 0.74 | FALSE |
| PL | Abcf1 | intron excision ratio | chr20_2807464_2812594 | 0.23 | 1 | 0.23 | 4.9e-25 | -5.26 | 1.48e-07 | 0.73 | FALSE |
| PL | Ddr1 | intron excision ratio | chr20_3063726_3065290 | 0.11 | 21 | 0.05 | 3.8e-06 | 5.57 | 2.53e-08 | 0.61 | FALSE |
| PL | Dhx16 | intron excision ratio | chr20_2868393_2869501 | 0.06 | 1 | 0.08 | 3.9e-09 | 5.41 | 6.30e-08 | 0.86 | FALSE |
| PL | LOC134483846 | intron excision ratio | chr20_2651165_2659663 | 0.65 | 25 | 0.7 | 5.1e-107 | 5.24 | 1.58e-07 | 0.71 | FALSE |
| PL | RT1-T24-4 | intron excision ratio | chr20_2696283_2696461 | 0.08 | 1 | 0.06 | 2.9e-07 | 5.41 | 6.30e-08 | 0.86 | FALSE |
| PL | Dhx16 | mRNA stability | Dhx16 | 0.3 | 11 | 0.33 | 7.6e-37 | 5.25 | 1.54e-07 | 0.71 | FALSE |
| PL | LOC134483846 | mRNA stability | LOC134483846 | 0.77 | 30 | 0.74 | 6.0e-119 | 5.23 | 1.72e-07 | 0.71 | FALSE |
| pVTA | RT1-N2 | alternative polyA | XM_039098782.2 | 0.5 | 92 | 0.24 | 3.3e-19 | 5.27 | 1.33e-07 | 0.72 | FALSE |
| pVTA | RT1-O1l1 | alternative polyA | XM_039099255.2 | 0.41 | 1 | 0.37 | 3.1e-31 | 5.28 | 1.28e-07 | 0.78 | FALSE |
| pVTA | RT1-O1l1 | alternative polyA | XM_039099257.2 | 0.4 | 13 | 0.44 | 1.8e-38 | -5.21 | 1.86e-07 | 0.74 | FALSE |
| pVTA | RT1-N2 | alternative TSS | NM_001008854.2 | 0.11 | 1 | 0.12 | 1.6e-09 | -5.28 | 1.29e-07 | 0.76 | FALSE |
| pVTA | LOC134483844 | gene expression | LOC134483844 | 0.57 | 1 | 0.3 | 6.6e-25 | -5.22 | 1.77e-07 | 0.9 | FALSE |
| pVTA | RT1-O1l1 | gene expression | RT1-O1l1 | 0.66 | 17 | 0.67 | 6.6e-73 | -5.22 | 1.78e-07 | 0.74 | TRUE |
| pVTA | RT1-T18 | gene expression | RT1-T18 | 0.65 | 24 | 0.51 | 2.1e-47 | -5.27 | 1.35e-07 | 0.75 | FALSE |
| pVTA | Abcf1 | intron excision ratio | chr20_2807464_2811704 | 0.15 | 1 | 0.18 | 4.5e-14 | 5.26 | 1.43e-07 | 0.73 | FALSE |
| pVTA | Atat1 | intron excision ratio | chr20_2856337_2858807 | 0.05 | 4 | 0.03 | 4.0e-03 | -5.3 | 1.13e-07 | 0.49 | FALSE |
| pVTA | Dhx16 | intron excision ratio | chr20_2868362_2869501 | 0.04 | 1 | 0.03 | 2.4e-03 | -5.25 | 1.55e-07 | 0.08 | FALSE |
| pVTA | LOC134483846 | intron excision ratio | chr20_2651165_2659663 | 0.85 | 30 | 0.58 | 9.0e-57 | 5.28 | 1.29e-07 | 0.71 | FALSE |
| pVTA | RT1-T24-3 | intron excision ratio | chr20_2729559_2730008 | 0.09 | 1 | 0.07 | 1.2e-06 | -5.22 | 1.81e-07 | 0.63 | FALSE |
| RMTg | LOC134483845 | gene expression | LOC134483845 | 0.42 | 53 | 0.26 | 1.9e-07 | -5.63 | 1.81e-08 | 0.53 | FALSE |
| RMTg | RT1-N2 | gene expression | RT1-N2 | 0.18 | 1 | 0.11 | 9.2e-04 | 5.26 | 1.45e-07 | 0.09 | FALSE |
| RMTg | RT1-O1l1 | gene expression | RT1-O1l1 | 0.55 | 39 | 0.35 | 2.8e-10 | -5.34 | 9.16e-08 | 0.73 | FALSE |
| RMTg | RT1-S2 | gene expression | RT1-S2 | 0.54 | 1 | 0.26 | 1.2e-07 | 5.25 | 1.55e-07 | 0.67 | FALSE |
| RMTg | Trim39 | gene expression | Trim39 | 0.15 | 1 | 0.03 | 5.4e-02 | -5.44 | 5.20e-08 | 0.09 | FALSE |
| RMTg | RT1-T24-3 | isoform ratio | XM_063279401.1 | 0.31 | 1 | 0.16 | 5.6e-05 | -5.23 | 1.67e-07 | 0.3 | FALSE |
| RMTg | Dhx16 | mRNA stability | Dhx16 | 0.17 | 1 | 0.15 | 8.6e-05 | 5.26 | 1.45e-07 | 0.12 | FALSE |