Best TWAS P=1.70e-11 · Best GWAS P=7.14e-12 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Tpd52 | alternative polyA | ENSRNOT00000120271 | 0.05 | 1 | 0.02 | 3.4e-03 | 6.7 | 2.08e-11 | 0.04 | FALSE |
Adipose | Tpd52 | alternative polyA | ENSRNOT00000099506 | 0.05 | 1 | 0.02 | 3.7e-03 | -6.7 | 2.08e-11 | 0.04 | FALSE |
Adipose | Tpd52 | alternative polyA | ENSRNOT00000120271 | 0.05 | 1 | 0.02 | 3.8e-03 | 6.7 | 2.08e-11 | 0.04 | FALSE |
Adipose | Tpd52 | alternative TSS | ENSRNOT00000120271 | 0.04 | 1 | 0.01 | 1.0e-02 | -6.47 | 9.93e-11 | 0.03 | FALSE |
Adipose | Zbtb10 | alternative TSS | ENSRNOT00000081553 | 0.29 | 27 | 0.19 | 2.7e-20 | -6.03 | 1.66e-09 | 0.57 | FALSE |
Adipose | Zbtb10 | alternative TSS | ENSRNOT00000087598 | 0.28 | 16 | 0.19 | 2.6e-20 | 6 | 1.93e-09 | 0.57 | FALSE |
Adipose | Snx16 | gene expression | ENSRNOG00000009953 | 0.11 | 157 | 0.06 | 1.2e-07 | -5.3 | 1.18e-07 | 0 | FALSE |
Adipose | Fabp12 | gene expression | ENSRNOG00000038825 | 0.14 | 1 | 0.08 | 3.2e-09 | -5.62 | 1.95e-08 | 0.6 | FALSE |
Adipose | Hey1 | gene expression | ENSRNOG00000062882 | 0.04 | 2629 | 0.02 | 5.5e-03 | -5.64 | 1.74e-08 | 0.27 | FALSE |
Adipose | Snx16 | isoform ratio | ENSRNOT00000083909 | 0.03 | 1 | 0.01 | 2.5e-02 | 5.66 | 1.49e-08 | 0.03 | FALSE |
Adipose | Zbtb10 | isoform ratio | ENSRNOT00000081553 | 0.25 | 5 | 0.16 | 4.9e-17 | -6.07 | 1.28e-09 | 0.55 | FALSE |
Adipose | Zbtb10 | isoform ratio | ENSRNOT00000087598 | 0.23 | 2314 | 0.15 | 1.4e-16 | 6.15 | 7.61e-10 | 0.56 | FALSE |
Adipose | Fabp4 | mRNA stability | ENSRNOG00000010805 | 0.05 | 1 | 0.03 | 3.2e-04 | 5.66 | 1.49e-08 | 0.1 | FALSE |
BLA | Fabp4 | gene expression | ENSRNOG00000010805 | 0.41 | 10 | 0.24 | 2.8e-13 | 5.35 | 8.79e-08 | 0.47 | FALSE |
BLA | Pmp2 | gene expression | ENSRNOG00000022707 | 0.1 | 1 | 0.08 | 5.9e-05 | 5.35 | 8.81e-08 | 0.48 | FALSE |
BLA | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.2 | 2083 | 0.08 | 3.5e-05 | 5.48 | 4.24e-08 | 0.16 | FALSE |
BLA | Zfp704 | gene expression | ENSRNOG00000054426 | 0.08 | 2020 | 0.03 | 7.8e-03 | -5.65 | 1.60e-08 | 0.14 | FALSE |
BLA | Pag1 | gene expression | ENSRNOG00000061328 | 0.06 | 1 | 0.01 | 1.2e-01 | -5.37 | 7.92e-08 | 0.04 | FALSE |
BLA | Hey1 | gene expression | ENSRNOG00000062882 | 0.07 | 1 | 0.03 | 1.5e-02 | 6.67 | 2.58e-11 | 0.04 | FALSE |
BLA | ENSRNOG00000066286 | gene expression | ENSRNOG00000066286 | 0.06 | 20 | 0.02 | 2.0e-02 | -5.46 | 4.82e-08 | 0.11 | FALSE |
BLA | Slc10a5 | gene expression | ENSRNOG00000067758 | 0.16 | 1 | 0.08 | 5.3e-05 | -5.55 | 2.78e-08 | 0.08 | FALSE |
BLA | Snx16 | isoform ratio | ENSRNOT00000096600 | 0.1 | 1 | 0.04 | 2.8e-03 | 5.26 | 1.47e-07 | 0.04 | FALSE |
BLA | Zfp704 | mRNA stability | ENSRNOG00000054426 | 0.08 | 2020 | 0.03 | 1.3e-02 | -5.71 | 1.16e-08 | 0.17 | FALSE |
Brain | Fabp4 | gene expression | ENSRNOG00000010805 | 0.18 | 1 | 0.1 | 6.0e-10 | 5.37 | 7.79e-08 | 0.29 | FALSE |
Brain | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.23 | 1 | 0.15 | 6.3e-14 | 6.52 | 7.02e-11 | 0.85 | FALSE |
Brain | Zfp704 | gene expression | ENSRNOG00000054426 | 0.03 | 1 | 0.01 | 2.3e-02 | -6.7 | 2.15e-11 | 0.04 | FALSE |
Brain | ENSRNOG00000066793 | gene expression | ENSRNOG00000066793 | 0.04 | 1 | 0.01 | 1.5e-02 | -5.27 | 1.38e-07 | 0.03 | FALSE |
Brain | Snx16 | isoform ratio | ENSRNOT00000083909 | 0.09 | 1 | 0.05 | 1.7e-05 | 5.27 | 1.38e-07 | 0.07 | FALSE |
Brain | Tpd52 | isoform ratio | ENSRNOT00000117383 | 0.03 | 45 | 0 | 1.6e-01 | 5.53 | 3.27e-08 | 0.23 | FALSE |
Brain | Tpd52 | intron excision ratio | chr2:92804650:92812941 | 0.04 | 2108 | 0.01 | 1.9e-02 | 6.06 | 1.33e-09 | 0.28 | FALSE |
Brain | Tpd52 | intron excision ratio | chr2:92805700:92811676 | 0.04 | 1 | 0.01 | 1.5e-02 | -6.73 | 1.70e-11 | 0.04 | TRUE |
Brain | Zbtb10 | intron excision ratio | chr2:92498889:92508405 | 0.03 | 1 | -0 | 4.5e-01 | -6.53 | 6.69e-11 | 0.03 | FALSE |
Brain | Mrps28 | mRNA stability | ENSRNOG00000032630 | 0.08 | 2057 | 0.03 | 1.8e-03 | 5.6 | 2.10e-08 | 0.34 | FALSE |
Brain | Zfp704 | mRNA stability | ENSRNOG00000054426 | 0.07 | 1 | 0.05 | 2.6e-05 | -6.54 | 6.34e-11 | 0.23 | FALSE |
IL | Zc2hc1a | alternative polyA | ENSRNOT00000095126 | 0.29 | 2421 | 0.01 | 1.9e-01 | -5.82 | 5.86e-09 | 0.25 | FALSE |
IL | Zc2hc1a | alternative polyA | ENSRNOT00000109624 | 0.32 | 2421 | 0.02 | 1.3e-01 | 5.28 | 1.28e-07 | 0.18 | FALSE |
IL | Zc2hc1a | alternative polyA | ENSRNOT00000095126 | 0.34 | 2421 | 0.02 | 9.7e-02 | -5.66 | 1.49e-08 | 0.29 | FALSE |
IL | Zc2hc1a | alternative polyA | ENSRNOT00000109624 | 0.3 | 2421 | 0.01 | 1.9e-01 | 5.67 | 1.42e-08 | 0.25 | FALSE |
IL | Fabp4 | gene expression | ENSRNOG00000010805 | 0.76 | 6 | 0.17 | 5.7e-05 | 5.53 | 3.14e-08 | 0.6 | FALSE |
IL | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.27 | 1 | 0.09 | 4.0e-03 | 5.35 | 9.00e-08 | 0.05 | FALSE |
IL | Tpd52 | mRNA stability | ENSRNOG00000011441 | 0.3 | 1 | 0.12 | 7.2e-04 | -6.72 | 1.85e-11 | 0.06 | FALSE |
Liver | Zbtb10 | alternative TSS | ENSRNOT00000081553 | 0.11 | 1 | 0.04 | 3.4e-05 | -5.34 | 9.12e-08 | 0.02 | FALSE |
Liver | Zbtb10 | alternative TSS | ENSRNOT00000087598 | 0.09 | 1 | 0.04 | 6.9e-05 | 5.34 | 9.12e-08 | 0.03 | FALSE |
Liver | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.04 | 8 | 0.02 | 1.4e-03 | 6.14 | 8.23e-10 | 0.35 | FALSE |
Liver | Zbtb10 | isoform ratio | ENSRNOT00000081553 | 0.16 | 1 | 0.04 | 3.0e-05 | -5.34 | 9.12e-08 | 0.02 | FALSE |
Liver | Zbtb10 | isoform ratio | ENSRNOT00000087598 | 0.15 | 1 | 0.04 | 7.8e-05 | 5.34 | 9.12e-08 | 0.03 | FALSE |
Liver | Mrps28 | intron excision ratio | chr2:92820902:92855850 | 0.17 | 2056 | 0.1 | 2.5e-11 | -5.15 | 2.58e-07 | 0 | FALSE |
Liver | Tpd52 | mRNA stability | ENSRNOG00000011441 | 0.07 | 1 | 0.04 | 7.4e-05 | -6.7 | 2.08e-11 | 0.1 | FALSE |
NAcc | Fabp4 | gene expression | ENSRNOG00000010805 | 0.1 | 19 | 0.03 | 4.4e-03 | 5.46 | 4.67e-08 | 0.54 | FALSE |
NAcc | Pmp2 | gene expression | ENSRNOG00000022707 | 0.12 | 1916 | 0.06 | 1.5e-05 | 5.71 | 1.11e-08 | 0.56 | FALSE |
NAcc | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.06 | 2081 | 0.02 | 1.6e-02 | 5.91 | 3.39e-09 | 0.45 | FALSE |
NAcc | ENSRNOG00000066793 | gene expression | ENSRNOG00000066793 | 0.15 | 86 | 0.08 | 9.2e-07 | -5.68 | 1.32e-08 | 0.18 | FALSE |
NAcc | Snx16 | isoform ratio | ENSRNOT00000083909 | 0.07 | 39 | 0.01 | 3.4e-02 | 5.38 | 7.27e-08 | 0.39 | FALSE |
OFC | Fabp4 | gene expression | ENSRNOG00000010805 | 0.43 | 1 | 0.08 | 7.4e-03 | 5.66 | 1.49e-08 | 0.06 | FALSE |
OFC | Pmp2 | gene expression | ENSRNOG00000022707 | 0.31 | 17 | 0.03 | 7.2e-02 | 5.91 | 3.44e-09 | 0.13 | FALSE |
OFC | Mrps28 | gene expression | ENSRNOG00000032630 | 0.44 | 1 | 0.11 | 1.5e-03 | 6.72 | 1.85e-11 | 0.06 | FALSE |
OFC | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.37 | 1 | 0.08 | 6.3e-03 | 5.32 | 1.01e-07 | 0.05 | FALSE |
OFC | Hey1 | gene expression | ENSRNOG00000062882 | 0.19 | 1 | 0.13 | 6.0e-04 | 6.5 | 7.95e-11 | 0.05 | FALSE |
PL | Tpd52 | alternative TSS | ENSRNOT00000015327 | 0.06 | 2108 | 0.02 | 2.0e-02 | 6.52 | 7.13e-11 | 0.35 | FALSE |
PL | Fabp4 | gene expression | ENSRNOG00000010805 | 0.57 | 207 | 0.27 | 6.5e-21 | 5.55 | 2.88e-08 | 0.68 | FALSE |
PL | Pmp2 | gene expression | ENSRNOG00000022707 | 0.11 | 1 | 0.06 | 4.0e-05 | 5.69 | 1.30e-08 | 0.32 | FALSE |
PL | Mrps28 | gene expression | ENSRNOG00000032630 | 0.18 | 1 | 0.06 | 1.2e-05 | 6.72 | 1.83e-11 | 0.38 | FALSE |
PL | ENSRNOG00000049075 | gene expression | ENSRNOG00000049075 | 0.33 | 1 | 0.23 | 1.5e-17 | 5.4 | 6.84e-08 | 0.01 | FALSE |
PL | Zbtb10 | gene expression | ENSRNOG00000061862 | 0.04 | 1 | 0 | 1.3e-01 | 6.73 | 1.71e-11 | 0.04 | FALSE |
PL | Hey1 | gene expression | ENSRNOG00000062882 | 0.14 | 2629 | 0.06 | 2.3e-05 | 6.47 | 9.84e-11 | 0.55 | FALSE |
PL | Slc10a5 | gene expression | ENSRNOG00000067758 | 0.06 | 1989 | 0.01 | 3.1e-02 | -5.39 | 7.07e-08 | 0.35 | FALSE |
PL | Tpd52 | isoform ratio | ENSRNOT00000077270 | 0.08 | 1 | 0.03 | 4.0e-03 | 6.56 | 5.37e-11 | 0.04 | FALSE |
PL | tGap1 | isoform ratio | ENSRNOT00000082912 | 0.06 | 1 | 0.02 | 2.1e-02 | -5.19 | 2.11e-07 | 0.04 | FALSE |
PL | Snx16 | intron excision ratio | chr2:91354845:91356529 | 0.08 | 1 | 0.02 | 9.1e-03 | -5.62 | 1.95e-08 | 0.05 | FALSE |