Best TWAS P = 6.92e-08 · Best GWAS P= 3.93e-08 conditioned to 1.20e-01
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Mtfr1 | mRNA stability | Mtfr1 | 0.08 | 1 | 0.04 | 5.4e-05 | 5.38 | 7.28e-08 | 0.33 | FALSE |
| BLA | Cyp7b1 | alternative polyA | XM_039101794.2 | 0.12 | 1 | 0.02 | 4.6e-02 | 5.23 | 1.67e-07 | 0.04 | FALSE |
| BLA | Cyp7b1 | alternative polyA | NM_019138.1 | 0.15 | 1 | 0.02 | 3.0e-02 | -5.23 | 1.67e-07 | 0.04 | FALSE |
| BLA | Cyp7b1 | alternative polyA | XM_063281357.1 | 0.14 | 1 | 0.02 | 3.6e-02 | 5.23 | 1.67e-07 | 0.04 | FALSE |
| BLA | Cyp7b1 | gene expression | Cyp7b1 | 0.4 | 2321 | 0.22 | 4.3e-12 | 5.33 | 9.96e-08 | 0.44 | FALSE |
| BLA | Cyp7b1 | isoform ratio | XM_063281357.1 | 0.25 | 42 | 0.11 | 1.3e-06 | -5.27 | 1.37e-07 | 0.31 | FALSE |
| Brain | Bhlhe22 | gene expression | Bhlhe22 | 0.08 | 1 | 0.05 | 1.8e-05 | 5.22 | 1.74e-07 | 0.19 | FALSE |
| Brain | Cyp7b1 | isoform ratio | NM_019138.1 | 0.08 | 2321 | 0.04 | 3.1e-04 | 5.29 | 1.22e-07 | 0.39 | FALSE |
| Brain | Cyp7b1 | mRNA stability | Cyp7b1 | 0.06 | 1 | 0.04 | 1.3e-04 | -5.28 | 1.29e-07 | 0.11 | FALSE |
| IC | Cyp7b1 | gene expression | Cyp7b1 | 0.14 | 1538 | 0.05 | 4.4e-03 | 5.32 | 1.05e-07 | 0.28 | FALSE |
| Liver | Mtfr1 | gene expression | Mtfr1 | 0.29 | 48 | 0.2 | 2.9e-22 | -5.33 | 9.71e-08 | 0.67 | FALSE |
| NAcc | Armc1 | gene expression | Armc1 | 0.05 | 1548 | 0.04 | 1.8e-06 | -5.26 | 1.46e-07 | 0.55 | FALSE |
| NAcc | Cyp7b1 | gene expression | Cyp7b1 | 0.1 | 1 | 0.09 | 4.4e-14 | -5.28 | 1.29e-07 | 0.48 | FALSE |
| NAcc | Mtfr1 | gene expression | Mtfr1 | 0.08 | 1 | 0.08 | 1.3e-11 | 5.34 | 9.37e-08 | 0.75 | FALSE |
| NAcc | Pde7a | gene expression | Pde7a | 0.03 | 1 | 0.03 | 1.0e-04 | 5.39 | 6.92e-08 | 0.39 | TRUE |
| OFC | Crh | gene expression | Crh | 0.2 | 1 | 0.05 | 2.2e-02 | 5.32 | 1.06e-07 | 0.16 | FALSE |
| PL | Cyp7b1 | alternative polyA | NM_019138.1 | 0.05 | 1 | 0.04 | 1.3e-05 | -5.31 | 1.10e-07 | 0.26 | FALSE |
| PL | Cyp7b1 | alternative polyA | XM_039101794.2 | 0.05 | 1 | 0.04 | 1.9e-05 | 5.31 | 1.10e-07 | 0.23 | FALSE |
| PL | Cyp7b1 | alternative polyA | NM_019138.1 | 0.05 | 1 | 0.04 | 2.6e-05 | -5.31 | 1.10e-07 | 0.33 | FALSE |
| PL | Cyp7b1 | alternative polyA | XM_063281357.1 | 0.05 | 1 | 0.05 | 9.3e-06 | 5.31 | 1.10e-07 | 0.31 | FALSE |
| PL | Cyp7b1 | gene expression | Cyp7b1 | 0.1 | 199 | 0.09 | 2.3e-10 | -5.22 | 1.78e-07 | 0.42 | FALSE |
| PL | Cyp7b1 | isoform ratio | XM_039101794.2 | 0.03 | 1 | 0.02 | 3.8e-03 | -5.3 | 1.15e-07 | 0.03 | FALSE |
| pVTA | Cyp7b1 | gene expression | Cyp7b1 | 0.08 | 1538 | 0.05 | 1.1e-04 | 5.36 | 8.22e-08 | 0.41 | FALSE |
| pVTA | Cyp7b1 | intron excision ratio | chr2_102554587_102585672 | 0.03 | 1538 | 0.01 | 3.2e-02 | 5.33 | 9.78e-08 | 0.26 | FALSE |