Best TWAS P=1.24e-10 · Best GWAS P=1.34e-10 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Scn8a | gene expression | ENSRNOG00000005309 | 0.66 | 1 | 0.63 | 1.7e-89 | 6.25 | 4.08e-10 | 0.77 | FALSE |
Adipose | Atg101 | gene expression | ENSRNOG00000007756 | 0.08 | 1112 | 0.04 | 2.4e-05 | 6.43 | 1.27e-10 | 0.52 | FALSE |
Adipose | Krt86 | gene expression | ENSRNOG00000008367 | 0.03 | 1318 | 0.01 | 5.1e-02 | 6.24 | 4.38e-10 | 0.52 | FALSE |
Adipose | Slc11a2 | gene expression | ENSRNOG00000019550 | 0.41 | 56 | 0.22 | 4.7e-24 | -5.48 | 4.20e-08 | 0.65 | FALSE |
Adipose | Krt80 | gene expression | ENSRNOG00000025994 | 0.11 | 1100 | 0.03 | 1.2e-04 | 6.32 | 2.70e-10 | 0.51 | FALSE |
Adipose | Acvrl1 | gene expression | ENSRNOG00000028713 | 0.06 | 258 | 0.03 | 1.1e-04 | -5.12 | 3.13e-07 | 0.57 | FALSE |
Adipose | Slc4a8 | gene expression | ENSRNOG00000028879 | 0.09 | 1377 | 0.1 | 1.1e-11 | 5.72 | 1.07e-08 | 0.11 | FALSE |
Adipose | Krt1 | gene expression | ENSRNOG00000028996 | 0.04 | 1 | 0.04 | 2.8e-05 | 5.28 | 1.26e-07 | 0.02 | FALSE |
Adipose | Krt79 | gene expression | ENSRNOG00000058340 | 0.12 | 34 | 0.21 | 1.0e-22 | 5.44 | 5.43e-08 | 0.01 | TRUE |
Adipose | ENSRNOG00000065340 | gene expression | ENSRNOG00000065340 | 0.05 | 1 | 0.04 | 1.4e-05 | -6.09 | 1.10e-09 | 0.12 | FALSE |
Adipose | ENSRNOG00000070769 | gene expression | ENSRNOG00000070769 | 0.26 | 1 | 0.17 | 4.7e-18 | 5.18 | 2.25e-07 | 0.02 | FALSE |
Adipose | Mettl7a | isoform ratio | ENSRNOT00000052075 | 0.04 | 1594 | 0.03 | 3.1e-04 | 5.12 | 3.09e-07 | 0.47 | FALSE |
Adipose | Scn8a | isoform ratio | ENSRNOT00000008160 | 0.06 | 1327 | 0.04 | 2.3e-05 | 5.9 | 3.61e-09 | 0.66 | FALSE |
Adipose | Csad | isoform ratio | ENSRNOT00000016205 | 0.09 | 5 | 0.04 | 1.9e-05 | 6.29 | 3.21e-10 | 0.31 | FALSE |
BLA | Krt86 | gene expression | ENSRNOG00000008367 | 0.08 | 1 | 0.11 | 1.6e-06 | -5.12 | 2.99e-07 | 0.01 | FALSE |
BLA | Krt1 | gene expression | ENSRNOG00000028996 | 0.23 | 15 | 0.28 | 4.3e-15 | 5.74 | 9.38e-09 | 0.38 | FALSE |
BLA | Galnt6 | gene expression | ENSRNOG00000033059 | 0.42 | 1453 | 0.46 | 8.1e-27 | 5.9 | 3.71e-09 | 0.74 | FALSE |
BLA | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.06 | 1112 | 0.04 | 4.0e-03 | -6.09 | 1.15e-09 | 0.4 | FALSE |
BLA | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.08 | 1 | 0.07 | 1.5e-04 | 6.3 | 2.89e-10 | 0.16 | FALSE |
BLA | Atg101 | intron excision ratio | chr7:132401594:132401715 | 0.07 | 50 | 0.03 | 9.4e-03 | -6.07 | 1.28e-09 | 0.4 | TRUE |
BLA | Scn8a | mRNA stability | ENSRNOG00000005309 | 0.05 | 1331 | 0.05 | 8.9e-04 | 5.96 | 2.51e-09 | 0.37 | FALSE |
Brain | Atg101 | gene expression | ENSRNOG00000007756 | 0.06 | 1 | 0.05 | 1.0e-05 | 6.3 | 2.89e-10 | 0.39 | FALSE |
Brain | Krt1 | gene expression | ENSRNOG00000028996 | 0.12 | 1 | 0.13 | 5.1e-12 | 6.07 | 1.24e-09 | 0.42 | FALSE |
Brain | Galnt6 | gene expression | ENSRNOG00000033059 | 0.47 | 73 | 0.62 | 3.8e-73 | 5.67 | 1.42e-08 | 0.7 | FALSE |
Brain | ENSRNOG00000065340 | gene expression | ENSRNOG00000065340 | 0.07 | 987 | 0.08 | 6.2e-08 | -5.95 | 2.70e-09 | 0.48 | FALSE |
Brain | Dazap2 | intron excision ratio | chr7:131716432:131717118 | 0.05 | 1583 | 0.04 | 6.2e-05 | 5.62 | 1.94e-08 | 0.64 | FALSE |
Brain | Dazap2 | intron excision ratio | chr7:131717363:131718880 | 0.04 | 1583 | 0.03 | 1.2e-03 | -5.58 | 2.36e-08 | 0.57 | FALSE |
Brain | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.04 | 1112 | 0.05 | 2.8e-05 | -6.07 | 1.25e-09 | 0.49 | FALSE |
Brain | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.08 | 1 | 0.09 | 2.2e-08 | 5.18 | 2.27e-07 | 0 | TRUE |
Brain | Igfbp6 | mRNA stability | ENSRNOG00000010977 | 0.03 | 1027 | 0.02 | 3.6e-03 | 5.86 | 4.73e-09 | 0.4 | FALSE |
Brain | Tfcp2 | mRNA stability | ENSRNOG00000032395 | 0.11 | 1 | 0.11 | 4.6e-10 | -5.47 | 4.53e-08 | 0.11 | FALSE |
Brain | ENSRNOG00000070769 | mRNA stability | ENSRNOG00000070769 | 0.13 | 1 | 0.04 | 6.4e-05 | -6.25 | 4.08e-10 | 0.64 | TRUE |
Eye | ENSRNOG00000008057 | gene expression | ENSRNOG00000008057 | 0.84 | 1127 | 0.06 | 4.5e-02 | 5.85 | 4.98e-09 | 0.26 | TRUE |
Eye | Krt4 | gene expression | ENSRNOG00000032332 | 0.32 | 1107 | 0.12 | 6.6e-03 | -5.65 | 1.60e-08 | 0.18 | FALSE |
Eye | Krt6a | gene expression | ENSRNOG00000068586 | 0.66 | 24 | 0.22 | 2.8e-04 | 6.24 | 4.37e-10 | 0.38 | FALSE |
Eye | ENSRNOG00000068784 | gene expression | ENSRNOG00000068784 | 0.45 | 1332 | 0.11 | 8.5e-03 | 6.07 | 1.24e-09 | 0.27 | FALSE |
Eye | Krt6a | gene expression | ENSRNOG00000070470 | 0.81 | 92 | 0.28 | 3.0e-05 | -6.13 | 8.52e-10 | 0.44 | FALSE |
IL | Krt1 | gene expression | ENSRNOG00000028996 | 0.13 | 1 | 0.1 | 2.4e-03 | 6.1 | 1.05e-09 | 0.06 | FALSE |
IL | Krt77 | gene expression | ENSRNOG00000036865 | 0.19 | 1261 | 0.06 | 1.7e-02 | -5.68 | 1.32e-08 | 0.17 | FALSE |
IL | ENSRNOG00000070769 | gene expression | ENSRNOG00000070769 | 0.47 | 1606 | 0.28 | 2.2e-07 | 5.84 | 5.26e-09 | 0.32 | FALSE |
LHb | Dazap2 | gene expression | ENSRNOG00000004628 | 0.36 | 1577 | 0.17 | 6.3e-05 | 5.33 | 9.78e-08 | 0.53 | TRUE |
LHb | Galnt6 | gene expression | ENSRNOG00000033059 | 0.68 | 9 | 0.31 | 4.3e-08 | 5.65 | 1.59e-08 | 0.55 | FALSE |
LHb | Krt77 | gene expression | ENSRNOG00000036865 | 0.16 | 5 | 0.09 | 3.4e-03 | -5.62 | 1.91e-08 | 0.33 | FALSE |
LHb | ENSRNOG00000065340 | gene expression | ENSRNOG00000065340 | 0.22 | 1 | 0.22 | 7.4e-06 | -6.1 | 1.08e-09 | 0.06 | FALSE |
Liver | Atg101 | gene expression | ENSRNOG00000007756 | 0.02 | 1112 | 0.01 | 2.2e-02 | 6.08 | 1.18e-09 | 0.33 | FALSE |
Liver | Krt71 | gene expression | ENSRNOG00000049495 | 0.23 | 26 | 0.11 | 6.6e-12 | -6.43 | 1.24e-10 | 0.58 | TRUE |
Liver | ENSRNOG00000070294 | gene expression | ENSRNOG00000070294 | 0.06 | 1 | 0.06 | 5.9e-07 | -5.52 | 3.43e-08 | 0.02 | FALSE |
Liver | Prr13 | isoform ratio | ENSRNOT00000113574 | 0.05 | 5 | 0.04 | 2.9e-05 | -5.25 | 1.49e-07 | 0.7 | FALSE |
Liver | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.02 | 1112 | 0.02 | 4.9e-03 | -5.88 | 4.06e-09 | 0.27 | FALSE |
Liver | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.03 | 17 | 0.03 | 6.5e-04 | 6.05 | 1.47e-09 | 0.43 | FALSE |
Liver | Atg101 | mRNA stability | ENSRNOG00000007756 | 0.04 | 1 | 0.05 | 3.2e-06 | -5.84 | 5.20e-09 | 0.06 | FALSE |
NAcc | Krt1 | gene expression | ENSRNOG00000028996 | 0.23 | 1332 | 0.27 | 4.1e-20 | 5.79 | 7.13e-09 | 0.48 | FALSE |
NAcc | Krt71 | gene expression | ENSRNOG00000049495 | 0.13 | 1439 | 0.17 | 1.3e-12 | 6.06 | 1.35e-09 | 0.41 | FALSE |
NAcc | ENSRNOG00000065340 | gene expression | ENSRNOG00000065340 | 0.27 | 1 | 0.06 | 4.7e-05 | -6.38 | 1.77e-10 | 0.24 | FALSE |
NAcc | ENSRNOG00000068784 | gene expression | ENSRNOG00000068784 | 0.04 | 1384 | 0.04 | 6.4e-04 | 6 | 1.92e-09 | 0.48 | FALSE |
NAcc | ENSRNOG00000070769 | gene expression | ENSRNOG00000070769 | 0.35 | 31 | 0.23 | 3.8e-17 | 5.32 | 1.03e-07 | 0.01 | FALSE |
NAcc | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.04 | 1112 | 0.03 | 3.9e-03 | -6.16 | 7.27e-10 | 0.46 | FALSE |
OFC | Galnt6 | gene expression | ENSRNOG00000033059 | 0.29 | 13 | 0.16 | 1.2e-04 | 5.14 | 2.78e-07 | 0.12 | FALSE |
OFC | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.12 | 1 | 0.08 | 6.5e-03 | -6.13 | 8.88e-10 | 0.05 | FALSE |
OFC | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.26 | 1 | 0.18 | 5.9e-05 | 6.13 | 8.88e-10 | 0.06 | FALSE |
PL | Csad | alternative polyA | ENSRNOT00000016205 | 0.17 | 11 | 0.13 | 2.6e-10 | 5.64 | 1.71e-08 | 0.11 | FALSE |
PL | Csad | alternative polyA | ENSRNOT00000079678 | 0.2 | 9 | 0.13 | 2.8e-10 | -5.3 | 1.15e-07 | 0.02 | FALSE |
PL | Csad | alternative polyA | ENSRNOT00000016205 | 0.25 | 2 | 0.14 | 5.6e-11 | 5.41 | 6.20e-08 | 0.02 | FALSE |
PL | Csad | alternative polyA | ENSRNOT00000079678 | 0.25 | 1121 | 0.14 | 1.6e-10 | -5.65 | 1.65e-08 | 0.01 | FALSE |
PL | Csad | alternative TSS | ENSRNOT00000079678 | 0.05 | 12 | 0.03 | 2.0e-03 | 5.42 | 5.98e-08 | 0.34 | FALSE |
PL | Csad | alternative TSS | ENSRNOT00000079678 | 0.05 | 1121 | 0.04 | 4.0e-04 | 5.82 | 5.98e-09 | 0.4 | FALSE |
PL | Krt80 | gene expression | ENSRNOG00000025994 | 0.04 | 1 | 0.04 | 9.7e-04 | 6.38 | 1.77e-10 | 0.09 | FALSE |
PL | Krt1 | gene expression | ENSRNOG00000028996 | 0.09 | 1332 | 0.1 | 2.4e-08 | 5.59 | 2.32e-08 | 0.56 | FALSE |
PL | ENSRNOG00000065340 | gene expression | ENSRNOG00000065340 | 0.09 | 10 | 0.04 | 7.2e-04 | -5.85 | 4.94e-09 | 0.57 | FALSE |
PL | ENSRNOG00000070769 | gene expression | ENSRNOG00000070769 | 0.36 | 95 | 0.41 | 1.3e-33 | 5.28 | 1.27e-07 | 0 | FALSE |
PL | Csad | isoform ratio | ENSRNOT00000016205 | 0.06 | 1121 | 0.01 | 5.5e-02 | 5.62 | 1.88e-08 | 0.24 | FALSE |
PL | Csad | isoform ratio | ENSRNOT00000079678 | 0.05 | 1121 | 0.01 | 3.0e-02 | -5.52 | 3.34e-08 | 0.14 | FALSE |
PL | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.05 | 1112 | 0.03 | 4.3e-03 | -6.16 | 7.45e-10 | 0.55 | FALSE |
PL | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.05 | 1112 | 0.03 | 1.7e-03 | 5.98 | 2.25e-09 | 0.46 | FALSE |