Best TWAS P=8.953842e-13 · Best GWAS P=8.639941e-13 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Phospho1 | alternative polyA | ENSRNOT00000007352 | 0.13 | 0.02 | top1 | 1 | 0.01 | 6.9e-03 | 6.3 | -6.3 | 3.6e-10 | -0.96 | 0.05 | 0.03 | FALSE |
2 | Adipose | Phospho1 | alternative polyA | ENSRNOT00000104900 | 0.12 | 0.01 | top1 | 1 | 0.01 | 1.1e-02 | 6.3 | 6.3 | 3.6e-10 | 0.96 | 0.05 | 0.03 | FALSE |
3 | Adipose | Phospho1 | alternative polyA | ENSRNOT00000007352 | 0.28 | 0.07 | enet | 71 | 0.08 | 8.8e-09 | 6.3 | -6.6 | 4.9e-11 | -0.82 | 0.94 | 0.06 | FALSE |
4 | Adipose | Phospho1 | alternative polyA | ENSRNOT00000104900 | 0.27 | 0.07 | enet | 72 | 0.07 | 1.3e-08 | 6.3 | 6.6 | 4.4e-11 | 0.80 | 0.94 | 0.06 | FALSE |
5 | Adipose | Cbx1 | alternative polyA | ENSRNOT00000011665 | 0.02 | 0.00 | blup | 1022 | 0.01 | 9.3e-03 | 4.6 | 5.6 | 2.3e-08 | 0.90 | 0.48 | 0.34 | FALSE |
6 | Adipose | Cbx1 | alternative polyA | ENSRNOT00000094691 | 0.02 | 0.01 | blup | 1022 | 0.01 | 1.1e-02 | 4.6 | -5.6 | 2.6e-08 | -0.90 | 0.46 | 0.34 | FALSE |
7 | Adipose | Mrpl45 | alternative polyA | ENSRNOT00000110256 | 0.05 | 0.02 | top1 | 1 | 0.02 | 4.0e-03 | 5.4 | 5.4 | 5.2e-08 | 0.40 | 0.04 | 0.21 | FALSE |
8 | Adipose | Npepps | alternative polyA | ENSRNOT00000031045 | 0.02 | 0.01 | enet | 76 | 0.01 | 7.0e-03 | 5.4 | -5.7 | 1.2e-08 | -0.77 | 0.20 | 0.56 | FALSE |
9 | Adipose | Npepps | alternative polyA | ENSRNOT00000115585 | 0.02 | 0.01 | enet | 42 | 0.01 | 7.6e-03 | 5.4 | 5.7 | 1.2e-08 | 0.80 | 0.20 | 0.54 | FALSE |
10 | Adipose | Phospho1 | alternative TSS | ENSRNOT00000007352 | 0.03 | 0.02 | top1 | 1 | 0.02 | 5.2e-03 | 6.4 | -6.4 | 1.4e-10 | -0.96 | 0.04 | 0.03 | FALSE |
11 | Adipose | Phospho1 | gene expression | ENSRNOG00000005569 | 0.34 | 0.31 | top1 | 1 | 0.31 | 3.4e-35 | 6.3 | -6.3 | 3.6e-10 | -0.96 | 0.96 | 0.04 | FALSE |
12 | Adipose | Abi3 | gene expression | ENSRNOG00000005575 | 0.09 | 0.13 | blup | 1409 | 0.13 | 1.4e-14 | 6.4 | -6.2 | 7.3e-10 | -0.96 | 0.90 | 0.10 | FALSE |
13 | Adipose | Hoxb9 | gene expression | ENSRNOG00000007573 | 0.09 | 0.03 | enet | 148 | 0.04 | 1.8e-05 | 6.4 | -6.0 | 2.0e-09 | -0.83 | 0.62 | 0.36 | TRUE |
14 | Adipose | Hoxb4 | gene expression | ENSRNOG00000008191 | 0.12 | 0.05 | lasso | 16 | 0.05 | 6.6e-06 | 5.4 | -5.4 | 5.9e-08 | -0.88 | 0.65 | 0.34 | FALSE |
15 | Adipose | Hoxb3 | gene expression | ENSRNOG00000008313 | 0.09 | 0.08 | top1 | 1 | 0.08 | 4.8e-09 | 5.9 | -5.9 | 2.8e-09 | -0.98 | 0.99 | 0.00 | FALSE |
16 | Adipose | NA | gene expression | ENSRNOG00000008365 | 0.11 | 0.13 | enet | 30 | 0.13 | 2.8e-14 | 5.9 | -5.9 | 3.6e-09 | -0.93 | 0.49 | 0.51 | FALSE |
17 | Adipose | Scrn2 | gene expression | ENSRNOG00000010214 | 0.14 | 0.19 | blup | 894 | 0.20 | 1.7e-21 | 5.1 | -5.3 | 1.4e-07 | -0.87 | 0.57 | 0.43 | FALSE |
18 | Adipose | Sp2 | gene expression | ENSRNOG00000010492 | 0.02 | 0.01 | top1 | 1 | 0.01 | 9.4e-03 | 5.4 | 5.4 | 6.4e-08 | 0.86 | 0.03 | 0.05 | FALSE |
19 | Adipose | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.59 | 0.42 | enet | 54 | 0.43 | 1.4e-51 | 5.4 | 5.3 | 1.0e-07 | 0.64 | 0.13 | 0.87 | FALSE |
20 | Adipose | Pip4k2b | gene expression | ENSRNOG00000013030 | 0.15 | 0.02 | top1 | 1 | 0.02 | 1.1e-03 | 5.2 | 5.2 | 1.9e-07 | 0.07 | 0.05 | 0.23 | FALSE |
21 | Adipose | Zfp652 | gene expression | ENSRNOG00000017001 | 0.09 | 0.11 | lasso | 17 | 0.12 | 7.1e-13 | 6.3 | -5.6 | 2.2e-08 | 0.27 | 0.76 | 0.24 | TRUE |
22 | Adipose | Phb | gene expression | ENSRNOG00000046799 | 0.03 | 0.02 | blup | 1338 | 0.03 | 8.0e-04 | 6.4 | -6.5 | 1.1e-10 | -0.97 | 0.45 | 0.54 | FALSE |
23 | Adipose | Cdk5rap3 | gene expression | ENSRNOG00000048747 | 0.03 | 0.02 | blup | 940 | 0.03 | 3.4e-04 | 5.1 | 5.3 | 9.8e-08 | 0.87 | 0.54 | 0.43 | FALSE |
24 | Adipose | Prr15l | gene expression | ENSRNOG00000049162 | 0.02 | 0.01 | top1 | 1 | 0.01 | 1.3e-02 | 5.1 | 5.1 | 2.7e-07 | 0.86 | 0.03 | 0.03 | FALSE |
25 | Adipose | NA | gene expression | ENSRNOG00000069592 | 0.27 | 0.19 | top1 | 1 | 0.19 | 2.8e-20 | 6.0 | -6.0 | 2.2e-09 | -0.95 | 0.98 | 0.02 | FALSE |
26 | Adipose | Phospho1 | isoform ratio | ENSRNOT00000115688 | 0.02 | 0.02 | top1 | 1 | 0.01 | 7.4e-03 | 6.3 | -6.3 | 3.9e-10 | -0.97 | 0.05 | 0.03 | FALSE |
27 | Adipose | Snf8 | isoform ratio | ENSRNOT00000008964 | 0.03 | 0.04 | lasso | 3 | 0.05 | 3.3e-06 | 4.7 | 5.8 | 7.5e-09 | 0.91 | 0.53 | 0.47 | FALSE |
28 | Adipose | Pnpo | isoform ratio | ENSRNOT00000073746 | 0.02 | 0.00 | blup | 950 | 0.01 | 5.2e-02 | 4.8 | -5.4 | 8.2e-08 | -0.86 | 0.42 | 0.36 | FALSE |
29 | Adipose | Pnpo | isoform ratio | ENSRNOT00000111538 | 0.02 | 0.00 | blup | 950 | 0.01 | 6.3e-02 | 4.8 | 5.4 | 7.2e-08 | 0.86 | 0.40 | 0.35 | FALSE |
30 | Adipose | Snf8 | intron excision ratio | chr10:80984820:80990408 | 0.02 | 0.01 | enet | 35 | 0.02 | 5.7e-03 | 6.9 | 6.5 | 6.9e-11 | 0.98 | 0.49 | 0.47 | FALSE |
31 | Adipose | Hoxb3 | mRNA stability | ENSRNOG00000008313 | 0.06 | 0.04 | top1 | 1 | 0.04 | 6.3e-05 | 6.7 | -6.7 | 2.2e-11 | -0.98 | 0.10 | 0.07 | FALSE |
32 | Adipose | Zfp652 | mRNA stability | ENSRNOG00000017001 | 0.03 | 0.03 | top1 | 1 | 0.03 | 2.8e-04 | 6.0 | -6.0 | 1.6e-09 | -0.94 | 0.14 | 0.03 | FALSE |
33 | Adipose | Kat7 | mRNA stability | ENSRNOG00000022664 | 0.03 | 0.01 | top1 | 1 | 0.01 | 7.0e-02 | 6.4 | 6.4 | 1.8e-10 | 0.73 | 0.04 | 0.15 | FALSE |
34 | Adipose | Npepps | mRNA stability | ENSRNOG00000023095 | 0.24 | 0.07 | top1 | 1 | 0.07 | 2.8e-08 | 5.4 | 5.4 | 6.9e-08 | 0.54 | 0.12 | 0.88 | FALSE |
35 | BLA | Cbx1 | gene expression | ENSRNOG00000008689 | 0.09 | 0.07 | blup | 1022 | 0.10 | 8.0e-06 | 5.4 | -5.7 | 1.5e-08 | -0.90 | 0.62 | 0.38 | FALSE |
36 | BLA | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.56 | 0.55 | lasso | 46 | 0.61 | 5.5e-41 | 5.4 | -5.4 | 6.9e-08 | -0.88 | 1.00 | 0.00 | FALSE |
37 | BLA | Kpnb1 | gene expression | ENSRNOG00000009275 | 0.13 | 0.06 | top1 | 1 | 0.06 | 6.3e-04 | 5.4 | 5.4 | 7.6e-08 | 0.60 | 0.05 | 0.12 | FALSE |
38 | BLA | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.78 | 0.59 | enet | 155 | 0.63 | 6.0e-43 | 5.4 | 5.4 | 7.5e-08 | 0.65 | 0.15 | 0.85 | FALSE |
39 | BLA | Skap1 | gene expression | ENSRNOG00000023881 | 0.20 | 0.22 | lasso | 10 | 0.22 | 3.0e-12 | 6.0 | 6.1 | 1.4e-09 | 0.95 | 0.78 | 0.22 | FALSE |
40 | BLA | NA | gene expression | ENSRNOG00000069592 | 0.61 | 0.53 | enet | 39 | 0.54 | 1.1e-33 | 6.4 | -6.2 | 6.1e-10 | -0.93 | 0.86 | 0.14 | FALSE |
41 | BLA | Phospho1 | isoform ratio | ENSRNOT00000094757 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.7e-03 | 7.1 | 7.1 | 9.0e-13 | 0.96 | 0.06 | 0.08 | TRUE |
42 | BLA | Osbpl7 | intron excision ratio | chr10:82036178:82036809 | 0.16 | 0.19 | blup | 888 | 0.22 | 9.0e-12 | 4.8 | -5.2 | 1.5e-07 | -0.84 | 0.61 | 0.39 | FALSE |
43 | BLA | Snf8 | mRNA stability | ENSRNOG00000006500 | 0.10 | 0.02 | blup | 1457 | 0.04 | 3.2e-03 | 6.3 | -6.8 | 8.3e-12 | -0.99 | 0.44 | 0.50 | FALSE |
44 | BLA | Lrrc46 | mRNA stability | ENSRNOG00000009902 | 0.06 | 0.03 | blup | 888 | 0.05 | 1.4e-03 | 5.1 | 5.3 | 9.8e-08 | 0.84 | 0.42 | 0.44 | FALSE |
45 | BLA | Mrpl45 | mRNA stability | ENSRNOG00000010540 | 0.30 | 0.12 | enet | 8 | 0.13 | 1.8e-07 | 5.0 | 5.1 | 2.6e-07 | 0.61 | 0.15 | 0.85 | FALSE |
46 | BLA | Cdk5rap3 | mRNA stability | ENSRNOG00000048747 | 0.15 | 0.07 | lasso | 20 | 0.08 | 4.9e-05 | 5.1 | 5.1 | 3.0e-07 | 0.70 | 0.47 | 0.51 | FALSE |
47 | Brain | Phospho1 | alternative polyA | ENSRNOT00000007352 | 0.02 | 0.01 | blup | 1426 | 0.02 | 1.2e-02 | 6.1 | -5.7 | 9.2e-09 | -0.93 | 0.53 | 0.20 | FALSE |
48 | Brain | Phospho1 | alternative polyA | ENSRNOT00000104900 | 0.02 | 0.02 | blup | 1426 | 0.02 | 1.0e-02 | 6.1 | 5.8 | 7.9e-09 | 0.93 | 0.56 | 0.19 | FALSE |
49 | Brain | Zfp652 | alternative TSS | ENSRNOT00000022811 | 0.02 | 0.02 | top1 | 1 | 0.02 | 1.2e-02 | 6.3 | 6.3 | 3.9e-10 | 0.94 | 0.05 | 0.03 | FALSE |
50 | Brain | Zfp652 | alternative TSS | ENSRNOT00000109486 | 0.02 | 0.02 | top1 | 1 | 0.02 | 1.1e-02 | 6.3 | -6.3 | 3.9e-10 | -0.94 | 0.05 | 0.03 | FALSE |
51 | Brain | Phospho1 | gene expression | ENSRNOG00000005569 | 0.09 | 0.07 | blup | 1426 | 0.10 | 9.5e-10 | 6.4 | -5.5 | 5.0e-08 | -0.91 | 0.82 | 0.18 | FALSE |
52 | Brain | Cbx1 | gene expression | ENSRNOG00000008689 | 0.17 | 0.20 | blup | 1022 | 0.21 | 2.6e-19 | 5.1 | -5.6 | 2.5e-08 | -0.90 | 0.90 | 0.10 | FALSE |
53 | Brain | Kpnb1 | gene expression | ENSRNOG00000009275 | 0.11 | 0.04 | top1 | 1 | 0.04 | 8.3e-05 | 5.4 | 5.4 | 6.1e-08 | 0.74 | 0.07 | 0.42 | FALSE |
54 | Brain | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.82 | 0.64 | enet | 60 | 0.65 | 3.1e-78 | 5.3 | 5.2 | 1.8e-07 | 0.59 | 0.16 | 0.84 | TRUE |
55 | Brain | Npepps | gene expression | ENSRNOG00000023095 | 0.38 | 0.21 | lasso | 14 | 0.23 | 6.8e-21 | 5.4 | 5.4 | 6.1e-08 | 0.61 | 0.13 | 0.87 | FALSE |
56 | Brain | Skap1 | gene expression | ENSRNOG00000023881 | 0.07 | 0.06 | blup | 1165 | 0.07 | 3.9e-07 | 7.1 | 6.7 | 2.3e-11 | 0.99 | 0.32 | 0.68 | FALSE |
57 | Brain | NA | gene expression | ENSRNOG00000069592 | 0.80 | 0.66 | enet | 63 | 0.68 | 3.2e-86 | 6.1 | -6.0 | 2.0e-09 | -0.92 | 0.90 | 0.10 | FALSE |
58 | Brain | Spop | isoform ratio | ENSRNOT00000077625 | 0.04 | 0.03 | blup | 1645 | 0.04 | 1.9e-04 | 4.2 | 5.4 | 6.9e-08 | 0.89 | 0.33 | 0.67 | FALSE |
59 | Brain | Snf8 | isoform ratio | ENSRNOT00000008964 | 0.10 | 0.06 | blup | 1457 | 0.07 | 6.7e-07 | 5.3 | 5.9 | 3.7e-09 | 0.93 | 0.82 | 0.18 | FALSE |
60 | Brain | Snf8 | intron excision ratio | chr10:80984820:80990408 | 0.08 | 0.10 | enet | 67 | 0.11 | 1.2e-10 | 6.6 | 6.0 | 1.6e-09 | 0.92 | 0.73 | 0.27 | FALSE |
61 | Brain | Mrpl45 | intron excision ratio | chr10:82310718:82313694 | 0.23 | 0.08 | top1 | 1 | 0.08 | 5.4e-08 | 5.4 | 5.4 | 7.8e-08 | 0.53 | 0.13 | 0.87 | FALSE |
62 | Brain | Tbkbp1 | mRNA stability | ENSRNOG00000009370 | 0.14 | 0.05 | top1 | 1 | 0.05 | 2.0e-05 | 5.4 | -5.4 | 7.8e-08 | -0.81 | 0.12 | 0.58 | FALSE |
63 | Brain | Pnpo | mRNA stability | ENSRNOG00000046493 | 0.03 | 0.03 | blup | 950 | 0.03 | 1.1e-03 | 5.1 | -5.2 | 2.4e-07 | -0.86 | 0.50 | 0.44 | FALSE |
64 | Eye | Sp2 | alternative polyA | ENSRNOT00000068083 | 0.36 | 0.08 | top1 | 1 | 0.08 | 2.1e-02 | 5.1 | -5.1 | 2.7e-07 | -0.87 | 0.05 | 0.06 | FALSE |
65 | Eye | Sp2 | alternative polyA | ENSRNOT00000087322 | 0.36 | 0.09 | top1 | 1 | 0.09 | 1.8e-02 | 5.1 | 5.1 | 2.7e-07 | 0.87 | 0.05 | 0.06 | FALSE |
66 | Eye | Gip | gene expression | ENSRNOG00000006306 | 0.78 | 0.11 | enet | 498 | 0.15 | 2.9e-03 | 6.4 | 5.9 | 3.8e-09 | 0.70 | 0.30 | 0.10 | FALSE |
67 | Eye | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.75 | 0.10 | lasso | 21 | 0.11 | 9.6e-03 | 5.1 | -6.5 | 5.8e-11 | -0.96 | 0.29 | 0.36 | FALSE |
68 | Eye | Spop | intron excision ratio | chr10:80401845:80416909 | 0.47 | 0.09 | top1 | 1 | 0.09 | 1.9e-02 | 6.4 | -6.4 | 1.7e-10 | -0.90 | 0.09 | 0.06 | FALSE |
69 | IL | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.73 | 0.42 | enet | 8 | 0.45 | 4.0e-12 | 5.4 | -6.3 | 2.8e-10 | -0.96 | 0.34 | 0.66 | FALSE |
70 | IL | Mrpl10 | gene expression | ENSRNOG00000009567 | 0.45 | 0.14 | lasso | 5 | 0.21 | 7.1e-06 | 4.9 | 5.5 | 4.8e-08 | 0.80 | 0.41 | 0.57 | FALSE |
71 | IL | Skap1 | gene expression | ENSRNOG00000023881 | 0.24 | 0.09 | enet | 4 | 0.13 | 5.4e-04 | 5.4 | 6.3 | 3.9e-10 | 0.95 | 0.38 | 0.38 | FALSE |
72 | IL | NA | gene expression | ENSRNOG00000069592 | 0.46 | 0.26 | blup | 1422 | 0.31 | 3.5e-08 | 6.4 | -6.5 | 6.0e-11 | -0.95 | 0.41 | 0.59 | FALSE |
73 | IL | Cdk5rap3 | isoform ratio | ENSRNOT00000094480 | 0.39 | 0.09 | lasso | 1 | 0.09 | 3.2e-03 | 5.1 | -5.1 | 2.7e-07 | 0.86 | 0.34 | 0.40 | TRUE |
74 | IL | Mrpl45 | intron excision ratio | chr10:82310718:82313694 | 0.31 | 0.13 | top1 | 1 | 0.13 | 5.0e-04 | 5.4 | 5.4 | 8.0e-08 | 0.38 | 0.05 | 0.08 | FALSE |
75 | IL | Mrpl45 | intron excision ratio | chr10:82310797:82313694 | 0.32 | 0.13 | top1 | 1 | 0.13 | 4.4e-04 | 5.4 | -5.4 | 5.9e-08 | -0.37 | 0.05 | 0.09 | FALSE |
76 | IL | Cdk5rap3 | mRNA stability | ENSRNOG00000048747 | 0.26 | 0.07 | blup | 938 | 0.10 | 2.3e-03 | 5.1 | 5.3 | 1.4e-07 | 0.83 | 0.35 | 0.39 | FALSE |
77 | LHb | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.56 | 0.27 | blup | 1028 | 0.37 | 1.2e-09 | 6.0 | -5.6 | 2.2e-08 | -0.90 | 0.54 | 0.46 | FALSE |
78 | LHb | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.87 | 0.44 | enet | 11 | 0.48 | 6.7e-13 | 5.4 | 5.2 | 1.6e-07 | 0.63 | 0.15 | 0.85 | FALSE |
79 | LHb | Prr15l | gene expression | ENSRNOG00000049162 | 0.15 | 0.04 | blup | 939 | 0.05 | 2.3e-02 | 4.8 | 5.2 | 1.6e-07 | 0.87 | 0.28 | 0.33 | FALSE |
80 | LHb | NA | gene expression | ENSRNOG00000069592 | 0.31 | 0.18 | blup | 1421 | 0.21 | 1.1e-05 | 6.3 | -6.6 | 5.0e-11 | -0.96 | 0.56 | 0.42 | FALSE |
81 | LHb | Cdk5rap3 | mRNA stability | ENSRNOG00000048747 | 0.40 | 0.22 | blup | 936 | 0.27 | 4.4e-07 | 5.1 | 5.4 | 5.6e-08 | 0.87 | 0.40 | 0.59 | FALSE |
82 | Liver | Phospho1 | alternative polyA | ENSRNOT00000007352 | 0.11 | 0.14 | enet | 57 | 0.15 | 1.4e-16 | 6.0 | -6.3 | 3.6e-10 | -0.93 | 0.95 | 0.05 | FALSE |
83 | Liver | Phospho1 | alternative polyA | ENSRNOT00000104900 | 0.12 | 0.16 | top1 | 1 | 0.16 | 3.4e-17 | 6.0 | 6.0 | 1.6e-09 | 0.96 | 0.99 | 0.01 | FALSE |
84 | Liver | Phospho1 | alternative polyA | ENSRNOT00000007352 | 0.31 | 0.43 | lasso | 71 | 0.44 | 1.2e-53 | 6.4 | -6.3 | 2.3e-10 | -0.94 | 0.94 | 0.06 | FALSE |
85 | Liver | Phospho1 | alternative polyA | ENSRNOT00000104900 | 0.31 | 0.43 | lasso | 66 | 0.44 | 7.1e-54 | 6.4 | 6.3 | 2.2e-10 | 0.95 | 0.94 | 0.06 | FALSE |
86 | Liver | Phospho1 | alternative TSS | ENSRNOT00000007352 | 0.08 | 0.13 | lasso | 84 | 0.13 | 1.2e-14 | 6.3 | -6.4 | 1.9e-10 | -0.95 | 0.90 | 0.10 | FALSE |
87 | Liver | Phospho1 | alternative TSS | ENSRNOT00000094757 | 0.02 | 0.01 | top1 | 1 | 0.01 | 1.7e-02 | 6.6 | -6.6 | 5.3e-11 | -0.96 | 0.05 | 0.03 | FALSE |
88 | Liver | Phospho1 | alternative TSS | ENSRNOT00000115688 | 0.10 | 0.17 | enet | 94 | 0.18 | 2.0e-19 | 6.2 | 6.4 | 1.4e-10 | 0.94 | 0.94 | 0.06 | FALSE |
89 | Liver | Phospho1 | gene expression | ENSRNOG00000005569 | 0.50 | 0.59 | lasso | 67 | 0.60 | 9.4e-84 | 6.4 | -6.4 | 1.5e-10 | -0.95 | 0.94 | 0.06 | FALSE |
90 | Liver | Abi3 | gene expression | ENSRNOG00000005575 | 0.02 | 0.01 | top1 | 1 | 0.01 | 2.0e-02 | 6.6 | 6.6 | 4.6e-11 | 0.97 | 0.04 | 0.03 | FALSE |
91 | Liver | Snf8 | gene expression | ENSRNOG00000006500 | 0.05 | 0.07 | top1 | 1 | 0.07 | 5.0e-08 | 6.7 | 6.7 | 2.2e-11 | 0.98 | 0.62 | 0.37 | FALSE |
92 | Liver | Ube2z | gene expression | ENSRNOG00000006868 | 0.04 | 0.03 | top1 | 1 | 0.03 | 2.6e-04 | 6.9 | 6.9 | 6.7e-12 | 0.98 | 0.13 | 0.21 | FALSE |
93 | Liver | Atp5mc1 | gene expression | ENSRNOG00000007235 | 0.08 | 0.07 | top1 | 1 | 0.07 | 2.0e-08 | 6.9 | 6.9 | 5.4e-12 | 0.98 | 0.30 | 0.70 | FALSE |
94 | Liver | Hoxb4 | gene expression | ENSRNOG00000008191 | 0.02 | 0.02 | top1 | 1 | 0.01 | 6.8e-03 | 5.4 | 5.4 | 7.1e-08 | 0.98 | 0.05 | 0.03 | FALSE |
95 | Liver | NA | gene expression | ENSRNOG00000008365 | 0.13 | 0.02 | enet | 30 | 0.03 | 2.4e-04 | 6.9 | 6.5 | 8.8e-11 | 0.99 | 0.34 | 0.54 | FALSE |
96 | Liver | Copz2 | gene expression | ENSRNOG00000009225 | 0.04 | 0.04 | blup | 1033 | 0.04 | 3.2e-05 | 4.9 | 5.2 | 2.2e-07 | 0.86 | 0.93 | 0.06 | FALSE |
97 | Liver | Kpnb1 | gene expression | ENSRNOG00000009275 | 0.06 | 0.05 | blup | 867 | 0.06 | 8.0e-07 | 5.1 | 5.5 | 4.6e-08 | 0.79 | 0.23 | 0.77 | TRUE |
98 | Liver | Scrn2 | gene expression | ENSRNOG00000010214 | 0.39 | 0.59 | lasso | 54 | 0.60 | 1.5e-83 | 5.0 | -5.1 | 2.7e-07 | -0.86 | 0.60 | 0.40 | FALSE |
99 | Liver | Sp2 | gene expression | ENSRNOG00000010492 | 0.05 | 0.07 | blup | 881 | 0.07 | 5.7e-08 | 4.9 | 5.3 | 9.4e-08 | 0.85 | 0.61 | 0.39 | FALSE |
100 | Liver | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.66 | 0.54 | lasso | 25 | 0.56 | 2.6e-74 | 5.4 | 5.6 | 2.1e-08 | 0.73 | 0.15 | 0.85 | FALSE |
101 | Liver | Zfp652 | gene expression | ENSRNOG00000017001 | 0.02 | 0.02 | lasso | 8 | 0.02 | 1.4e-03 | 4.7 | 5.4 | 5.2e-08 | 0.78 | 0.42 | 0.30 | TRUE |
102 | Liver | Prr15l | gene expression | ENSRNOG00000049162 | 0.05 | 0.04 | blup | 943 | 0.06 | 5.2e-07 | 4.6 | 5.5 | 4.3e-08 | 0.85 | 0.54 | 0.46 | FALSE |
103 | Liver | Psmb3 | gene expression | ENSRNOG00000052730 | 0.15 | 0.02 | top1 | 1 | 0.02 | 3.4e-03 | 5.2 | 5.2 | 1.8e-07 | 0.32 | 0.04 | 0.07 | FALSE |
104 | Liver | Atp5mc1 | gene expression | ENSRNOG00000069121 | 0.33 | 0.37 | top1 | 1 | 0.37 | 2.4e-43 | 6.8 | 6.8 | 1.1e-11 | 0.98 | 0.46 | 0.54 | FALSE |
105 | Liver | Phospho1 | isoform ratio | ENSRNOT00000115688 | 0.02 | 0.01 | blup | 1424 | 0.02 | 2.2e-03 | 6.4 | -6.7 | 2.1e-11 | -0.96 | 0.52 | 0.19 | FALSE |
106 | Liver | Spop | intron excision ratio | chr10:80358427:80401795 | 0.04 | 0.02 | top1 | 1 | 0.02 | 2.6e-03 | 5.2 | -5.2 | 2.2e-07 | -0.84 | 0.06 | 0.03 | FALSE |
107 | Liver | Snf8 | intron excision ratio | chr10:80984820:80990408 | 0.13 | 0.10 | enet | 20 | 0.10 | 1.4e-11 | 5.4 | 5.7 | 1.5e-08 | 0.94 | 0.57 | 0.43 | FALSE |
108 | Liver | Snx11 | intron excision ratio | chr10:81749679:81752622 | 0.02 | 0.02 | top1 | 1 | 0.02 | 2.8e-03 | 5.4 | 5.4 | 6.4e-08 | 0.90 | 0.04 | 0.03 | FALSE |
109 | Liver | Scrn2 | intron excision ratio | chr10:82019956:82020039 | 0.03 | 0.04 | blup | 894 | 0.04 | 2.1e-05 | 4.4 | 5.3 | 1.1e-07 | 0.86 | 0.57 | 0.42 | FALSE |
110 | Liver | Atp5mc1 | intron excision ratio | chr10:81026083:81026596 | 0.22 | 0.13 | top1 | 1 | 0.13 | 1.2e-14 | 6.8 | 6.8 | 1.1e-11 | 0.98 | 0.46 | 0.54 | FALSE |
111 | Liver | Atp5mc1 | intron excision ratio | chr10:81026083:81026666 | 0.17 | 0.13 | enet | 47 | 0.13 | 1.5e-14 | 6.8 | -6.8 | 1.1e-11 | -0.97 | 0.37 | 0.63 | FALSE |
112 | Liver | Ube2z | mRNA stability | ENSRNOG00000006868 | 0.03 | 0.03 | enet | 65 | 0.03 | 1.4e-04 | 6.2 | 6.6 | 4.8e-11 | 0.97 | 0.61 | 0.38 | FALSE |
113 | Liver | Sp2 | mRNA stability | ENSRNOG00000010492 | 0.02 | 0.02 | blup | 881 | 0.02 | 9.0e-04 | 5.2 | 5.5 | 4.4e-08 | 0.83 | 0.33 | 0.55 | FALSE |
114 | NAcc | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.80 | 0.28 | enet | 13 | 0.39 | 1.0e-09 | 5.4 | -5.4 | 7.1e-08 | -0.91 | 0.41 | 0.59 | FALSE |
115 | NAcc | Tbkbp1 | gene expression | ENSRNOG00000009370 | 0.88 | 0.27 | top1 | 1 | 0.27 | 1.2e-06 | 5.3 | -5.3 | 1.1e-07 | -0.69 | 0.10 | 0.31 | FALSE |
116 | NAcc | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.87 | 0.25 | blup | 858 | 0.29 | 2.6e-07 | 5.0 | 5.5 | 3.5e-08 | 0.65 | 0.15 | 0.84 | FALSE |
117 | NAcc | Pnpo | gene expression | ENSRNOG00000046493 | 0.81 | 0.30 | enet | 15 | 0.34 | 2.3e-08 | 4.6 | -5.2 | 2.4e-07 | -0.87 | 0.51 | 0.49 | FALSE |
118 | NAcc | Cdk5rap3 | gene expression | ENSRNOG00000048747 | 0.26 | 0.11 | top1 | 1 | 0.11 | 2.2e-03 | 5.4 | 5.4 | 5.2e-08 | 0.86 | 0.05 | 0.06 | FALSE |
119 | NAcc | NA | gene expression | ENSRNOG00000069592 | 0.34 | 0.11 | blup | 1421 | 0.15 | 3.1e-04 | 6.4 | -6.0 | 1.6e-09 | -0.95 | 0.51 | 0.46 | FALSE |
120 | NAcc | Mrpl10 | intron excision ratio | chr10:82026127:82029469 | 0.21 | 0.01 | blup | 881 | 0.04 | 5.8e-02 | 4.6 | -5.3 | 1.3e-07 | -0.86 | 0.23 | 0.23 | FALSE |
121 | NAcc | Cdk5rap3 | mRNA stability | ENSRNOG00000048747 | 0.23 | 0.09 | top1 | 1 | 0.09 | 4.3e-03 | 5.1 | 5.1 | 2.6e-07 | 0.86 | 0.05 | 0.06 | FALSE |
122 | NAcc2 | Cbx1 | gene expression | ENSRNOG00000008689 | 0.29 | 0.11 | top1 | 1 | 0.11 | 1.5e-06 | 6.6 | -6.6 | 4.3e-11 | -0.90 | 0.22 | 0.72 | FALSE |
123 | NAcc2 | Osbpl7 | gene expression | ENSRNOG00000009473 | 0.05 | 0.03 | blup | 888 | 0.05 | 1.3e-03 | 4.7 | -5.3 | 1.1e-07 | -0.86 | 0.49 | 0.38 | FALSE |
124 | NAcc2 | Scrn2 | gene expression | ENSRNOG00000010214 | 0.19 | 0.19 | blup | 894 | 0.20 | 3.8e-11 | 4.7 | -5.3 | 1.5e-07 | -0.86 | 0.67 | 0.33 | FALSE |
125 | NAcc2 | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.75 | 0.59 | lasso | 21 | 0.61 | 8.1e-41 | 5.4 | 5.5 | 3.7e-08 | 0.67 | 0.15 | 0.85 | FALSE |
126 | NAcc2 | Prr15l | gene expression | ENSRNOG00000049162 | 0.15 | 0.14 | top1 | 1 | 0.14 | 6.3e-08 | 6.0 | 6.0 | 2.2e-09 | 0.87 | 0.02 | 0.98 | FALSE |
127 | NAcc2 | Nfe2l1 | isoform ratio | ENSRNOT00000067542 | 0.10 | 0.06 | top1 | 1 | 0.06 | 3.6e-04 | 5.1 | 5.1 | 2.9e-07 | 0.88 | 0.06 | 0.04 | FALSE |
128 | NAcc2 | Pnpo | isoform ratio | ENSRNOT00000073746 | 0.08 | 0.07 | enet | 19 | 0.07 | 1.1e-04 | 5.4 | -5.4 | 5.7e-08 | -0.88 | 0.46 | 0.52 | FALSE |
129 | NAcc2 | Pnpo | isoform ratio | ENSRNOT00000111538 | 0.08 | 0.08 | enet | 19 | 0.08 | 3.2e-05 | 5.4 | 5.4 | 5.7e-08 | 0.88 | 0.47 | 0.52 | FALSE |
130 | NAcc2 | Snf8 | intron excision ratio | chr10:80984820:80990408 | 0.05 | 0.02 | blup | 1457 | 0.03 | 1.7e-02 | 2.9 | 6.1 | 9.6e-10 | 0.97 | 0.40 | 0.32 | FALSE |
131 | OFC | Nfe2l1 | alternative TSS | ENSRNOT00000067542 | 0.24 | 0.07 | enet | 8 | 0.10 | 2.0e-03 | 5.4 | 5.9 | 4.8e-09 | 0.88 | 0.34 | 0.25 | FALSE |
132 | OFC | Cbx1 | gene expression | ENSRNOG00000008689 | 0.21 | 0.09 | blup | 1020 | 0.11 | 1.7e-03 | 5.4 | -5.4 | 5.6e-08 | -0.88 | 0.50 | 0.24 | FALSE |
133 | OFC | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.80 | 0.37 | blup | 1031 | 0.50 | 1.3e-13 | 5.2 | -5.3 | 1.4e-07 | -0.88 | 0.84 | 0.16 | FALSE |
134 | OFC | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.88 | 0.48 | top1 | 1 | 0.48 | 3.6e-13 | 5.2 | 5.2 | 1.6e-07 | 0.57 | 0.23 | 0.76 | FALSE |
135 | OFC | Skap1 | gene expression | ENSRNOG00000023881 | 0.21 | 0.14 | top1 | 1 | 0.14 | 3.6e-04 | 6.9 | 6.9 | 6.7e-12 | 0.96 | 0.07 | 0.07 | FALSE |
136 | OFC | Prr15l | gene expression | ENSRNOG00000049162 | 0.13 | 0.02 | blup | 941 | 0.03 | 6.0e-02 | 4.9 | 5.1 | 3.3e-07 | 0.86 | 0.25 | 0.27 | FALSE |
137 | OFC | NA | gene expression | ENSRNOG00000069592 | 0.69 | 0.48 | enet | 17 | 0.54 | 2.5e-15 | 6.4 | -6.0 | 1.5e-09 | -0.94 | 0.72 | 0.28 | FALSE |
138 | OFC | Snx11 | isoform ratio | ENSRNOT00000011474 | 0.25 | 0.07 | top1 | 1 | 0.07 | 8.1e-03 | 5.4 | 5.4 | 7.8e-08 | 0.89 | 0.06 | 0.05 | FALSE |
139 | OFC | Snx11 | isoform ratio | ENSRNOT00000089146 | 0.15 | 0.04 | blup | 1021 | 0.05 | 3.0e-02 | 5.4 | -5.9 | 3.3e-09 | -0.89 | 0.29 | 0.29 | FALSE |
140 | OFC | Cbx1 | intron excision ratio | chr10:81785362:81789208 | 0.15 | 0.00 | blup | 1020 | 0.04 | 3.6e-02 | 5.2 | -5.1 | 3.2e-07 | -0.88 | 0.32 | 0.19 | FALSE |
141 | OFC | Cbx1 | intron excision ratio | chr10:81785540:81789208 | 0.16 | 0.08 | top1 | 1 | 0.08 | 6.3e-03 | 5.2 | 5.2 | 2.5e-07 | 0.89 | 0.06 | 0.05 | FALSE |
142 | OFC | Mrpl45 | intron excision ratio | chr10:82310718:82313694 | 0.30 | 0.11 | top1 | 1 | 0.11 | 1.5e-03 | 5.2 | 5.2 | 1.8e-07 | 0.54 | 0.05 | 0.07 | FALSE |
143 | OFC | Mrpl45 | intron excision ratio | chr10:82310797:82313694 | 0.33 | 0.12 | top1 | 1 | 0.12 | 7.4e-04 | 5.2 | -5.2 | 1.8e-07 | -0.54 | 0.05 | 0.08 | FALSE |
144 | PL | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.72 | 0.44 | blup | 1031 | 0.46 | 2.8e-12 | 5.1 | -5.6 | 2.0e-08 | -0.88 | 0.79 | 0.21 | FALSE |
145 | PL | Mrpl10 | gene expression | ENSRNOG00000009567 | 0.35 | 0.12 | blup | 883 | 0.18 | 4.2e-05 | 5.1 | 5.3 | 1.4e-07 | 0.79 | 0.44 | 0.54 | FALSE |
146 | PL | Skap1 | gene expression | ENSRNOG00000023881 | 0.19 | 0.12 | lasso | 2 | 0.13 | 7.0e-04 | 5.1 | 6.4 | 1.5e-10 | 0.60 | 0.46 | 0.36 | FALSE |
147 | PL | NA | gene expression | ENSRNOG00000069592 | 0.71 | 0.32 | lasso | 6 | 0.45 | 6.3e-12 | 6.4 | -6.2 | 7.4e-10 | -0.94 | 0.65 | 0.35 | FALSE |
148 | PL | Mrpl45 | intron excision ratio | chr10:82310718:82313694 | 0.50 | 0.15 | top1 | 1 | 0.15 | 2.1e-04 | 5.3 | 5.3 | 1.1e-07 | 0.68 | 0.05 | 0.10 | FALSE |
149 | PL | Mrpl45 | intron excision ratio | chr10:82310797:82313694 | 0.52 | 0.16 | top1 | 1 | 0.16 | 1.0e-04 | 5.3 | -5.3 | 1.1e-07 | -0.66 | 0.06 | 0.12 | FALSE |
150 | PL2 | Ttll6 | gene expression | ENSRNOG00000004939 | 0.10 | 0.06 | blup | 1486 | 0.06 | 2.4e-04 | 6.3 | -6.5 | 9.8e-11 | -0.98 | 0.58 | 0.41 | FALSE |
151 | PL2 | Cbx1 | gene expression | ENSRNOG00000008689 | 0.15 | 0.18 | top1 | 1 | 0.18 | 4.9e-10 | 5.8 | -5.8 | 4.9e-09 | -0.89 | 0.96 | 0.03 | FALSE |
152 | PL2 | Nfe2l1 | gene expression | ENSRNOG00000008830 | 0.57 | 0.54 | lasso | 25 | 0.56 | 2.4e-36 | 5.4 | -5.4 | 6.5e-08 | -0.88 | 1.00 | 0.00 | FALSE |
153 | PL2 | Mrpl45 | gene expression | ENSRNOG00000010540 | 0.81 | 0.56 | lasso | 24 | 0.57 | 2.3e-37 | 5.1 | 5.3 | 1.4e-07 | 0.63 | 0.15 | 0.85 | FALSE |
154 | PL2 | Npepps | gene expression | ENSRNOG00000023095 | 0.29 | 0.12 | top1 | 1 | 0.12 | 2.9e-07 | 5.2 | 5.2 | 1.8e-07 | 0.66 | 0.21 | 0.60 | FALSE |
155 | PL2 | Skap1 | gene expression | ENSRNOG00000023881 | 0.27 | 0.17 | lasso | 3 | 0.18 | 2.6e-10 | 6.7 | 6.5 | 7.9e-11 | 0.95 | 0.44 | 0.56 | FALSE |
156 | PL2 | Cdk5rap3 | gene expression | ENSRNOG00000048747 | 0.22 | 0.16 | lasso | 15 | 0.16 | 3.5e-09 | 5.4 | 5.4 | 5.2e-08 | 0.88 | 0.39 | 0.61 | FALSE |
157 | PL2 | Prr15l | gene expression | ENSRNOG00000049162 | 0.06 | 0.03 | top1 | 1 | 0.03 | 1.4e-02 | 5.2 | 5.2 | 1.8e-07 | 0.86 | 0.04 | 0.04 | FALSE |
158 | PL2 | B4galnt2 | gene expression | ENSRNOG00000067203 | 0.07 | 0.06 | blup | 1405 | 0.06 | 2.2e-04 | 6.3 | -6.6 | 3.7e-11 | -0.97 | 0.58 | 0.39 | FALSE |
159 | PL2 | NA | gene expression | ENSRNOG00000069592 | 0.54 | 0.46 | lasso | 25 | 0.47 | 4.4e-28 | 6.4 | -6.2 | 4.2e-10 | -0.92 | 0.72 | 0.28 | FALSE |
160 | PL2 | Psmb3 | isoform ratio | ENSRNOT00000112080 | 0.09 | 0.03 | top1 | 1 | 0.03 | 1.2e-02 | 5.2 | -5.2 | 1.9e-07 | -0.08 | 0.04 | 0.05 | FALSE |
161 | PL2 | Snf8 | intron excision ratio | chr10:80984820:80990408 | 0.08 | 0.08 | top1 | 1 | 0.08 | 4.0e-05 | 6.0 | 6.0 | 1.5e-09 | 0.98 | 0.17 | 0.04 | FALSE |
162 | PL2 | Mrpl45 | intron excision ratio | chr10:82310718:82313694 | 0.11 | 0.02 | top1 | 1 | 0.02 | 1.9e-02 | 5.4 | 5.4 | 8.6e-08 | 0.53 | 0.04 | 0.08 | TRUE |
163 | PL2 | Mrpl45 | mRNA stability | ENSRNOG00000010540 | 0.31 | 0.13 | top1 | 1 | 0.13 | 2.0e-07 | 5.4 | 5.4 | 7.6e-08 | 0.43 | 0.12 | 0.84 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.