Best TWAS P=4.83e-11 · Best GWAS P=1.76e-11 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Dstn | gene expression | ENSRNOG00000005924 | 0.59 | 1575 | 0.48 | 3.4e-60 | 5.63 | 1.77e-08 | 0.08 | FALSE |
Adipose | Dtd1 | gene expression | ENSRNOG00000008746 | 0.28 | 19 | 0.15 | 5.0e-16 | 5.44 | 5.47e-08 | 0.52 | FALSE |
Adipose | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.04 | 20 | 0.01 | 1.5e-02 | -5.92 | 3.14e-09 | 0.37 | FALSE |
Adipose | Dstn | mRNA stability | ENSRNOG00000005924 | 0.83 | 184 | 0.6 | 1.1e-83 | 5.45 | 4.93e-08 | 0.06 | TRUE |
Adipose | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.08 | 1 | 0.06 | 5.6e-07 | 5.17 | 2.35e-07 | 0.18 | FALSE |
BLA | Kif16b | gene expression | ENSRNOG00000004951 | 0.04 | 1 | 0.04 | 4.1e-03 | 6.42 | 1.36e-10 | 0.04 | FALSE |
BLA | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.05 | 1 | 0.02 | 4.4e-02 | 6.44 | 1.16e-10 | 0.04 | FALSE |
BLA | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.11 | 1 | 0.07 | 1.9e-04 | 5.75 | 8.67e-09 | 0.04 | FALSE |
BLA | Dstn | gene expression | ENSRNOG00000005924 | 0.84 | 268 | 0.64 | 9.8e-44 | 6.04 | 1.58e-09 | 0.27 | FALSE |
BLA | Dtd1 | gene expression | ENSRNOG00000008746 | 0.25 | 2 | 0.16 | 4.4e-09 | 5.41 | 6.17e-08 | 0.4 | TRUE |
BLA | Otor | gene expression | ENSRNOG00000028721 | 0.07 | 1960 | 0.04 | 2.7e-03 | -5.94 | 2.93e-09 | 0.25 | TRUE |
BLA | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.14 | 1 | 0.07 | 8.2e-05 | 5.87 | 4.24e-09 | 0.61 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.13 | 1 | 0.07 | 7.7e-05 | -5.87 | 4.24e-09 | 0.51 | FALSE |
BLA | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.23 | 1 | 0.15 | 3.1e-08 | -6.43 | 1.26e-10 | 0.55 | FALSE |
BLA | Dstn | mRNA stability | ENSRNOG00000005924 | 0.45 | 182 | 0.39 | 2.2e-22 | 6.32 | 2.63e-10 | 0.6 | FALSE |
BLA | Kat14 | mRNA stability | ENSRNOG00000007160 | 0.05 | 4 | 0.03 | 9.8e-03 | -5.29 | 1.25e-07 | 0.15 | FALSE |
Brain | Rrbp1 | alternative TSS | ENSRNOT00000055602 | 0.03 | 1597 | 0.03 | 2.1e-03 | -5.73 | 9.81e-09 | 0.42 | FALSE |
Brain | Rrbp1 | alternative TSS | ENSRNOT00000101060 | 0.03 | 1597 | 0.02 | 2.7e-03 | 5.79 | 7.23e-09 | 0.4 | FALSE |
Brain | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.06 | 1963 | 0.05 | 1.0e-05 | 5.49 | 4.03e-08 | 0.4 | FALSE |
Brain | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.38 | 1 | 0.44 | 3.9e-44 | 5.83 | 5.41e-09 | 0.04 | FALSE |
Brain | Dstn | gene expression | ENSRNOG00000005924 | 0.72 | 189 | 0.8 | 3.2e-120 | 5.92 | 3.18e-09 | 0.06 | FALSE |
Brain | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.14 | 1597 | 0.16 | 4.1e-15 | -5.99 | 2.10e-09 | 0.34 | FALSE |
Brain | Sec23b | gene expression | ENSRNOG00000008411 | 0.78 | 128 | 0.8 | 7.8e-119 | 5.12 | 3.02e-07 | 0.02 | FALSE |
Brain | Zfp133 | gene expression | ENSRNOG00000027955 | 0.17 | 1 | 0.16 | 2.7e-14 | -5.2 | 1.94e-07 | 0.15 | FALSE |
Brain | Otor | gene expression | ENSRNOG00000028721 | 0.1 | 25 | 0.11 | 5.1e-10 | -5.33 | 9.58e-08 | 0.35 | FALSE |
Brain | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.03 | 1 | 0.03 | 5.7e-04 | 6.36 | 2.02e-10 | 0.04 | FALSE |
Brain | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.3 | 118 | 0.22 | 3.0e-20 | 5.18 | 2.22e-07 | 0.09 | FALSE |
Brain | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.03 | 1963 | 0.01 | 1.3e-02 | 5.38 | 7.54e-08 | 0.31 | FALSE |
Brain | Dstn | mRNA stability | ENSRNOG00000005924 | 0.71 | 239 | 0.52 | 1.2e-56 | 5.9 | 3.69e-09 | 0.06 | FALSE |
Brain | Smim26 | mRNA stability | ENSRNOG00000036971 | 0.03 | 1 | 0.02 | 2.7e-03 | 5.12 | 3.06e-07 | 0.04 | FALSE |
Eye | Dstn | gene expression | ENSRNOG00000005924 | 0.77 | 1048 | 0.25 | 1.1e-04 | 6.01 | 1.82e-09 | 0.37 | FALSE |
Eye | Sec23b | gene expression | ENSRNOG00000008411 | 0.81 | 19 | 0.29 | 2.1e-05 | 5.71 | 1.15e-08 | 0.6 | FALSE |
Eye | Zfp133 | intron excision ratio | chr3:131829590:131840865 | 0.3 | 1 | 0.04 | 9.9e-02 | -5.96 | 2.54e-09 | 0.06 | FALSE |
IL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.49 | 1 | 0.21 | 7.5e-06 | 6.34 | 2.36e-10 | 0.08 | FALSE |
IL | Dstn | gene expression | ENSRNOG00000005924 | 0.79 | 1574 | 0.39 | 2.0e-10 | 6.21 | 5.22e-10 | 0.51 | FALSE |
IL | ENSRNOG00000067833 | gene expression | ENSRNOG00000067833 | 0.33 | 9 | 0.13 | 5.9e-04 | 5.33 | 9.97e-08 | 0.08 | FALSE |
IL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.54 | 1574 | 0.34 | 4.2e-09 | 5.94 | 2.93e-09 | 0.47 | FALSE |
LHb | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.24 | 1 | 0.15 | 2.3e-04 | 6.29 | 3.23e-10 | 0.05 | FALSE |
LHb | Dstn | gene expression | ENSRNOG00000005924 | 0.8 | 8 | 0.5 | 1.3e-13 | 6.19 | 6.06e-10 | 0.36 | FALSE |
LHb | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.22 | 1 | 0.21 | 1.0e-05 | -6.35 | 2.20e-10 | 0.07 | FALSE |
LHb | Dzank1 | gene expression | ENSRNOG00000007440 | 0.14 | 1804 | 0.04 | 4.6e-02 | -5.72 | 1.09e-08 | 0.4 | FALSE |
LHb | Otor | gene expression | ENSRNOG00000028721 | 0.26 | 5 | 0.01 | 1.7e-01 | -6.07 | 1.30e-09 | 0.22 | FALSE |
LHb | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.11 | 6 | 0.03 | 7.3e-02 | -5.88 | 4.21e-09 | 0.34 | FALSE |
LHb | Dstn | mRNA stability | ENSRNOG00000005924 | 0.39 | 1 | 0.37 | 8.7e-10 | 5.79 | 7.00e-09 | 0.04 | FALSE |
Liver | Kif16b | alternative polyA | ENSRNOT00000036273 | 0.18 | 1 | 0.14 | 6.7e-15 | -6.32 | 2.55e-10 | 0.38 | FALSE |
Liver | Kif16b | alternative polyA | ENSRNOT00000118037 | 0.18 | 1 | 0.14 | 1.3e-15 | 6.31 | 2.76e-10 | 0.36 | FALSE |
Liver | Kif16b | gene expression | ENSRNOG00000004951 | 0.21 | 12 | 0.18 | 3.7e-19 | -6.31 | 2.83e-10 | 0.58 | FALSE |
Liver | Dstn | gene expression | ENSRNOG00000005924 | 0.67 | 1575 | 0.53 | 2.6e-69 | 5.86 | 4.60e-09 | 0.15 | FALSE |
Liver | Kat14 | gene expression | ENSRNOG00000007160 | 0.05 | 37 | 0.04 | 3.9e-05 | -5.41 | 6.38e-08 | 0.03 | FALSE |
Liver | Rbbp9 | gene expression | ENSRNOG00000007972 | 0.12 | 9 | 0.08 | 2.9e-09 | 5.23 | 1.74e-07 | 0.29 | FALSE |
Liver | Sec23b | gene expression | ENSRNOG00000008411 | 0.09 | 1824 | 0.05 | 5.2e-06 | 5.33 | 1.01e-07 | 0.67 | FALSE |
Liver | Dtd1 | gene expression | ENSRNOG00000008746 | 0.2 | 1829 | 0.09 | 1.2e-10 | 5.3 | 1.15e-07 | 0.49 | FALSE |
Liver | Kif16b | isoform ratio | ENSRNOT00000083061 | 0.06 | 1 | 0.04 | 4.7e-05 | -6.27 | 3.65e-10 | 0.15 | FALSE |
Liver | Kif16b | isoform ratio | ENSRNOT00000118037 | 0.15 | 2140 | 0.13 | 4.0e-14 | 6.47 | 9.50e-11 | 0.48 | FALSE |
Liver | Mgme1 | isoform ratio | ENSRNOT00000038865 | 0.03 | 1 | 0.02 | 4.0e-03 | -5.36 | 8.47e-08 | 0.03 | FALSE |
Liver | Mgme1 | isoform ratio | ENSRNOT00000098696 | 0.03 | 1 | 0.02 | 3.2e-03 | 5.36 | 8.47e-08 | 0.03 | FALSE |
Liver | Kif16b | intron excision ratio | chr3:129976371:129996958 | 0.03 | 2140 | 0.01 | 2.4e-02 | -5.22 | 1.78e-07 | 0.09 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.04 | 1 | 0.03 | 3.5e-04 | 6.23 | 4.71e-10 | 0.07 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3:130399832:130400989 | 0.06 | 1963 | 0.03 | 2.4e-04 | -6.46 | 1.08e-10 | 0.47 | FALSE |
Liver | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.29 | 91 | 0.21 | 2.3e-22 | 5.2 | 1.96e-07 | 0.37 | FALSE |
Liver | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.29 | 25 | 0.2 | 9.7e-22 | -5.18 | 2.17e-07 | 0.38 | FALSE |
Liver | Dstn | mRNA stability | ENSRNOG00000005924 | 0.67 | 1575 | 0.5 | 1.1e-63 | 5.7 | 1.22e-08 | 0.1 | FALSE |
Liver | Rbbp9 | mRNA stability | ENSRNOG00000007972 | 0.04 | 1818 | 0.01 | 8.2e-03 | 5.66 | 1.49e-08 | 0.62 | FALSE |
NAcc | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.04 | 1 | 0.02 | 1.4e-02 | 5.8 | 6.46e-09 | 0.03 | FALSE |
NAcc | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.25 | 6 | 0.15 | 3.4e-11 | 5.72 | 1.07e-08 | 0.32 | FALSE |
NAcc | Dstn | gene expression | ENSRNOG00000005924 | 0.84 | 1 | 0.7 | 1.4e-71 | 6.04 | 1.51e-09 | 0.15 | FALSE |
NAcc | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.11 | 1 | 0.11 | 2.0e-08 | -5.89 | 3.96e-09 | 0.09 | FALSE |
NAcc | Otor | gene expression | ENSRNOG00000028721 | 0.04 | 1 | 0.01 | 5.2e-02 | -6.15 | 7.78e-10 | 0.03 | FALSE |
NAcc | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.17 | 1 | 0.08 | 7.7e-07 | 5.12 | 3.06e-07 | 0.13 | FALSE |
NAcc | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.17 | 79 | 0.08 | 1.7e-06 | -5.17 | 2.29e-07 | 0.4 | FALSE |
NAcc | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.04 | 27 | 0.01 | 5.8e-02 | -6.5 | 7.77e-11 | 0.47 | TRUE |
NAcc | Dstn | mRNA stability | ENSRNOG00000005924 | 0.55 | 212 | 0.48 | 1.3e-39 | 5.94 | 2.85e-09 | 0.14 | FALSE |
OFC | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.62 | 9 | 0.38 | 5.0e-10 | 5.18 | 2.20e-07 | 0.29 | TRUE |
OFC | Dstn | gene expression | ENSRNOG00000005924 | 0.82 | 41 | 0.52 | 1.4e-14 | 5.94 | 2.86e-09 | 0.43 | FALSE |
OFC | Dstn | mRNA stability | ENSRNOG00000005924 | 0.29 | 1574 | 0.19 | 3.1e-05 | 6.18 | 6.52e-10 | 0.48 | FALSE |
PL | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.12 | 9 | 0.11 | 1.3e-08 | 6.31 | 2.82e-10 | 0.41 | FALSE |
PL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.15 | 80 | 0.18 | 1.0e-13 | 6.38 | 1.76e-10 | 0.47 | FALSE |
PL | Dstn | gene expression | ENSRNOG00000005924 | 0.88 | 165 | 0.62 | 4.1e-59 | 5.84 | 5.31e-09 | 0.07 | FALSE |
PL | Dtd1 | gene expression | ENSRNOG00000008746 | 0.16 | 1 | 0.16 | 3.3e-12 | 5.12 | 3.12e-07 | 0.29 | FALSE |
PL | Zfp133 | gene expression | ENSRNOG00000027955 | 0.19 | 1 | 0.12 | 1.3e-09 | -5.2 | 2.01e-07 | 0.14 | FALSE |
PL | Otor | gene expression | ENSRNOG00000028721 | 0.06 | 1972 | 0.05 | 1.0e-04 | -6.22 | 4.99e-10 | 0.43 | FALSE |
PL | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.05 | 1963 | 0.03 | 2.9e-03 | 6.57 | 5.17e-11 | 0.44 | FALSE |
PL | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.07 | 69 | 0.05 | 1.2e-04 | 5.41 | 6.24e-08 | 0.35 | FALSE |
PL | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.09 | 41 | 0.03 | 1.4e-03 | 5.62 | 1.87e-08 | 0.19 | FALSE |
PL | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.04 | 1 | 0.02 | 5.4e-03 | -6.58 | 4.83e-11 | 0.04 | TRUE |
PL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.7 | 52 | 0.49 | 6.1e-42 | 5.7 | 1.22e-08 | 0.06 | FALSE |