Best TWAS P=3.08e-11 · Best GWAS P=1.76e-11 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Dtd1 | gene expression | Dtd1 | 0.34 | 12 | 0.18 | 1.5e-19 | 5.35 | 8.87e-08 | 0.45 | FALSE |
Adipose | Dzank1 | gene expression | Dzank1 | 0.1 | 1802 | 0.04 | 3.6e-05 | -5.47 | 4.54e-08 | 0.8 | FALSE |
Adipose | Rbbp9 | gene expression | Rbbp9 | 0.11 | 1820 | 0.03 | 2.1e-04 | 5.43 | 5.55e-08 | 0.65 | FALSE |
Adipose | Kif16b | isoform ratio | XM_006235108.4 | 0.07 | 2158 | 0.03 | 1.7e-04 | 5.65 | 1.59e-08 | 0.17 | FALSE |
Adipose | Dstn | mRNA stability | Dstn | 0.8 | 253 | 0.61 | 1.5e-84 | -5.55 | 2.90e-08 | 0.06 | FALSE |
Adipose | LOC120101717 | mRNA stability | LOC120101717 | 0.05 | 2365 | 0.01 | 9.9e-03 | 5.4 | 6.54e-08 | 0.35 | TRUE |
BLA | Kif16b | gene expression | Kif16b | 0.05 | 2131 | 0.02 | 1.9e-02 | 6.11 | 1.02e-09 | 0.42 | FALSE |
BLA | Otor | gene expression | Otor | 0.06 | 1963 | 0.01 | 1.2e-01 | -6.06 | 1.32e-09 | 0.24 | TRUE |
BLA | Scp2d1 | gene expression | Scp2d1 | 0.26 | 1 | 0.13 | 2.1e-07 | 5.29 | 1.24e-07 | 0.8 | FALSE |
BLA | Snrpb2 | gene expression | Snrpb2 | 0.06 | 1954 | 0.01 | 5.2e-02 | 6.35 | 2.13e-10 | 0.43 | FALSE |
BLA | Snrpb2 | isoform ratio | XM_039105470.1 | 0.09 | 7 | 0.07 | 1.2e-04 | -5.66 | 1.54e-08 | 0.3 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3_131927367_131929585 | 0.12 | 1 | 0.06 | 2.9e-04 | -5.79 | 6.95e-09 | 0.14 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3_131929308_131929585 | 0.11 | 1 | 0.06 | 4.1e-04 | 5.79 | 6.95e-09 | 0.11 | FALSE |
BLA | Dstn | mRNA stability | Dstn | 0.44 | 123 | 0.26 | 2.1e-14 | -6.19 | 6.08e-10 | 0.49 | FALSE |
BLA | Pcsk2 | mRNA stability | Pcsk2 | 0.27 | 1 | 0.09 | 1.5e-05 | 6.43 | 1.26e-10 | 0.48 | FALSE |
Brain | Rrbp1 | alternative TSS | XM_039106605.1 | 0.02 | 1593 | 0.01 | 1.4e-02 | 6.15 | 7.87e-10 | 0.53 | FALSE |
Brain | Rrbp1 | alternative TSS | XM_230637.10 | 0.02 | 1593 | 0.02 | 1.2e-02 | -6.15 | 7.93e-10 | 0.53 | FALSE |
Brain | Rrbp1 | alternative TSS | XM_039106605.1 | 0.03 | 1 | 0.02 | 3.5e-03 | -6.6 | 4.02e-11 | 0.14 | FALSE |
Brain | Rrbp1 | alternative TSS | XM_230637.10 | 0.03 | 1 | 0.03 | 1.7e-03 | 6.6 | 4.02e-11 | 0.22 | FALSE |
Brain | Dtd1 | gene expression | Dtd1 | 0.2 | 149 | 0.19 | 1.3e-17 | -5.39 | 6.88e-08 | 0.43 | FALSE |
Brain | Dzank1 | gene expression | Dzank1 | 0.07 | 1 | 0.06 | 2.0e-06 | 5.37 | 7.69e-08 | 0.38 | FALSE |
Brain | Kif16b | gene expression | Kif16b | 0.15 | 93 | 0.1 | 7.0e-10 | -5.26 | 1.43e-07 | 0.03 | FALSE |
Brain | Otor | gene expression | Otor | 0.1 | 1990 | 0.11 | 4.9e-10 | -6.13 | 9.04e-10 | 0.36 | FALSE |
Brain | Pcsk2 | gene expression | Pcsk2 | 0.38 | 38 | 0.46 | 1.0e-47 | -5.77 | 7.82e-09 | 0.32 | TRUE |
Brain | Rrbp1 | gene expression | Rrbp1 | 0.12 | 17 | 0.16 | 3.7e-15 | -6.13 | 8.93e-10 | 0.25 | TRUE |
Brain | Snrpb2 | gene expression | Snrpb2 | 0.08 | 50 | 0.08 | 3.2e-08 | -5.87 | 4.24e-09 | 0.41 | FALSE |
Brain | Zfp133 | gene expression | Zfp133 | 0.16 | 107 | 0.15 | 8.2e-14 | 5.26 | 1.45e-07 | 0.18 | FALSE |
Brain | Dzank1 | intron excision ratio | chr3_131906549_131908083 | 0.04 | 1804 | 0.02 | 5.0e-03 | 5.59 | 2.30e-08 | 0.5 | FALSE |
Brain | LOC120101719 | intron excision ratio | chr3_130525654_130567132 | 0.13 | 39 | 0.2 | 2.1e-18 | 6.48 | 9.00e-11 | 0.42 | FALSE |
Brain | Snrpb2 | intron excision ratio | chr3_130399307_130400989 | 0.04 | 1981 | 0.04 | 2.9e-04 | 6.46 | 1.07e-10 | 0.44 | FALSE |
Brain | Dstn | mRNA stability | Dstn | 0.5 | 165 | 0.37 | 1.1e-35 | -5.9 | 3.69e-09 | 0.07 | FALSE |
Eye | Sec23b | gene expression | Sec23b | 0.79 | 20 | 0.22 | 3.0e-04 | 5.79 | 6.90e-09 | 0.5 | FALSE |
IL | LOC120101719 | alternative polyA | XR_005502514.1 | 0.24 | 74 | 0.27 | 4.2e-07 | 6.02 | 1.78e-09 | 0.41 | FALSE |
IL | LOC120101719 | alternative polyA | XR_005502515.1 | 0.24 | 1 | 0.29 | 1.1e-07 | -5.81 | 6.40e-09 | 0.04 | FALSE |
IL | Rbbp9 | alternative polyA | NM_019219.3 | 0.3 | 1822 | 0.14 | 3.7e-04 | -5.29 | 1.25e-07 | 0.61 | FALSE |
IL | Rbbp9 | alternative polyA | NM_019219.3 | 0.34 | 31 | 0.14 | 2.6e-04 | -5.59 | 2.22e-08 | 0.68 | FALSE |
IL | Rbbp9 | alternative polyA | XM_039104445.1 | 0.34 | 42 | 0.14 | 2.6e-04 | 5.65 | 1.64e-08 | 0.69 | FALSE |
IL | LOC120101719 | gene expression | LOC120101719 | 0.19 | 1 | 0.08 | 5.1e-03 | -5.77 | 7.72e-09 | 0.05 | FALSE |
IL | Pcsk2 | gene expression | Pcsk2 | 0.5 | 1455 | 0.15 | 2.4e-04 | 6 | 1.95e-09 | 0.33 | FALSE |
IL | LOC120101719 | isoform ratio | XR_005502514.1 | 0.26 | 1 | 0.34 | 5.5e-09 | 5.81 | 6.40e-09 | 0.04 | FALSE |
IL | LOC120101719 | isoform ratio | XR_005502515.1 | 0.26 | 1 | 0.34 | 5.4e-09 | -5.81 | 6.40e-09 | 0.04 | FALSE |
IL | Rbbp9 | isoform ratio | XM_039104444.1 | 0.24 | 22 | 0.08 | 6.1e-03 | 5.99 | 2.05e-09 | 0.59 | FALSE |
IL | LOC120101719 | intron excision ratio | chr3_130525654_130567132 | 0.32 | 1 | 0.13 | 5.8e-04 | 6.2 | 5.61e-10 | 0.05 | FALSE |
IL | Dstn | mRNA stability | Dstn | 0.58 | 237 | 0.36 | 1.8e-09 | -6.13 | 8.73e-10 | 0.5 | FALSE |
LHb | Otor | gene expression | Otor | 0.24 | 1990 | 0.01 | 1.8e-01 | -6.17 | 6.76e-10 | 0.26 | FALSE |
LHb | Rrbp1 | gene expression | Rrbp1 | 0.24 | 1593 | 0.13 | 6.3e-04 | -5.96 | 2.53e-09 | 0.5 | FALSE |
LHb | Snrpb2 | gene expression | Snrpb2 | 0.3 | 1981 | 0.14 | 3.6e-04 | 5.94 | 2.78e-09 | 0.3 | FALSE |
LHb | Zfp133 | gene expression | Zfp133 | 0.24 | 26 | 0.06 | 2.0e-02 | -5.22 | 1.78e-07 | 0.34 | FALSE |
LHb | Sec23b | intron excision ratio | chr3_131955920_131958981 | 0.39 | 35 | 0.2 | 1.8e-05 | 5.31 | 1.08e-07 | 0.48 | FALSE |
LHb | Dstn | mRNA stability | Dstn | 0.33 | 1573 | 0.24 | 1.9e-06 | 6.12 | 9.30e-10 | 0.44 | FALSE |
Liver | Kif16b | alternative polyA | XM_039105041.1 | 0.16 | 2158 | 0.13 | 6.2e-14 | 6.38 | 1.77e-10 | 0.47 | FALSE |
Liver | Kif16b | alternative polyA | XM_039105043.1 | 0.11 | 2158 | 0.06 | 4.2e-07 | -6.17 | 6.88e-10 | 0.48 | FALSE |
Liver | Dtd1 | gene expression | Dtd1 | 0.21 | 1829 | 0.11 | 8.4e-12 | 5.29 | 1.24e-07 | 0.5 | FALSE |
Liver | Kif16b | gene expression | Kif16b | 0.24 | 83 | 0.2 | 1.4e-21 | 6.33 | 2.46e-10 | 0.59 | FALSE |
Liver | LOC120101717 | gene expression | LOC120101717 | 0.05 | 2365 | 0.01 | 1.9e-02 | -5.81 | 6.17e-09 | 0.21 | FALSE |
Liver | Kif16b | isoform ratio | NM_001107783.2 | 0.03 | 1 | 0.03 | 2.2e-04 | 5.92 | 3.26e-09 | 0.03 | FALSE |
Liver | Kif16b | isoform ratio | XM_039105043.1 | 0.03 | 2158 | 0.01 | 1.6e-02 | -6.21 | 5.39e-10 | 0.38 | FALSE |
Liver | Rbbp9 | intron excision ratio | chr3_131927367_131929585 | 0.3 | 98 | 0.21 | 7.7e-23 | -5.27 | 1.39e-07 | 0.37 | FALSE |
Liver | Rbbp9 | intron excision ratio | chr3_131929308_131929585 | 0.3 | 8 | 0.21 | 1.2e-22 | -5.26 | 1.46e-07 | 0.39 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3_130399307_130400989 | 0.04 | 1 | 0.04 | 3.1e-05 | -6.22 | 4.89e-10 | 0.07 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3_130399832_130400989 | 0.05 | 1 | 0.05 | 4.2e-06 | 6.22 | 4.89e-10 | 0.13 | FALSE |
Liver | Dstn | mRNA stability | Dstn | 0.63 | 1572 | 0.39 | 8.2e-46 | 5.54 | 3.01e-08 | 0.09 | FALSE |
Liver | Rbbp9 | mRNA stability | Rbbp9 | 0.15 | 1820 | 0.12 | 4.7e-13 | 5.43 | 5.64e-08 | 0.63 | FALSE |
NAcc | Kif16b | alternative polyA | XM_039105041.1 | 0.06 | 2158 | 0.04 | 5.5e-06 | 5.92 | 3.32e-09 | 0.43 | FALSE |
NAcc | LOC120101719 | alternative polyA | XR_005502514.1 | 0.11 | 1 | 0.15 | 1.4e-16 | 6.47 | 1.01e-10 | 0.53 | FALSE |
NAcc | LOC102550304 | gene expression | LOC102550304 | 0.18 | 7 | 0.25 | 7.8e-29 | 5.24 | 1.56e-07 | 0.01 | TRUE |
NAcc | Otor | gene expression | Otor | 0.03 | 1 | 0.04 | 9.3e-06 | 6.15 | 7.78e-10 | 0.08 | FALSE |
NAcc | Pcsk2 | gene expression | Pcsk2 | 0.09 | 1455 | 0.12 | 1.6e-13 | 6.44 | 1.16e-10 | 0.45 | FALSE |
NAcc | Rrbp1 | gene expression | Rrbp1 | 0.07 | 1 | 0.07 | 8.1e-09 | 5.72 | 1.06e-08 | 0.04 | FALSE |
NAcc | Snrpb2 | gene expression | Snrpb2 | 0.04 | 1981 | 0.03 | 1.2e-04 | 6.23 | 4.69e-10 | 0.37 | FALSE |
NAcc | Zfp133 | gene expression | Zfp133 | 0.09 | 6 | 0.09 | 1.6e-10 | -5.24 | 1.59e-07 | 0.23 | FALSE |
NAcc | Kif16b | isoform ratio | XM_006235108.4 | 0.02 | 2158 | 0.02 | 1.9e-03 | 5.96 | 2.58e-09 | 0.35 | FALSE |
NAcc | LOC120101719 | isoform ratio | XR_005502514.1 | 0.12 | 1 | 0.13 | 3.4e-15 | 6.47 | 1.01e-10 | 0.53 | FALSE |
NAcc | Snrpb2 | intron excision ratio | chr3_130399307_130400989 | 0.08 | 1981 | 0.07 | 2.0e-08 | 6.07 | 1.25e-09 | 0.37 | FALSE |
NAcc | Snrpb2 | intron excision ratio | chr3_130399832_130400989 | 0.08 | 1981 | 0.09 | 1.6e-10 | -6.6 | 4.14e-11 | 0.52 | FALSE |
NAcc | Dstn | mRNA stability | Dstn | 0.28 | 1 | 0.32 | 2.1e-38 | -5.77 | 8.13e-09 | 0.03 | FALSE |
OFC | LOC120101719 | alternative polyA | XR_005502514.1 | 0.35 | 43 | 0.3 | 7.6e-08 | 5.6 | 2.10e-08 | 0.4 | FALSE |
OFC | LOC120101719 | alternative polyA | XR_005502515.1 | 0.35 | 86 | 0.29 | 1.6e-07 | -5.67 | 1.43e-08 | 0.4 | FALSE |
OFC | LOC120101719 | gene expression | LOC120101719 | 0.18 | 1 | 0.22 | 7.2e-06 | -6.14 | 8.34e-10 | 0.05 | FALSE |
OFC | Pcsk2 | gene expression | Pcsk2 | 0.56 | 1 | 0.36 | 1.7e-09 | -5.81 | 6.40e-09 | 0.03 | FALSE |
OFC | LOC120101719 | isoform ratio | XR_005502514.1 | 0.38 | 1 | 0.26 | 5.6e-07 | 6.27 | 3.60e-10 | 0.12 | FALSE |
OFC | LOC120101719 | intron excision ratio | chr3_130525654_130567132 | 0.13 | 10 | 0.14 | 2.9e-04 | 5.29 | 1.23e-07 | 0.3 | FALSE |
OFC | LOC120101719 | intron excision ratio | chr3_130529471_130567132 | 0.14 | 10 | 0.15 | 2.4e-04 | -5.26 | 1.47e-07 | 0.31 | FALSE |
OFC | Dstn | mRNA stability | Dstn | 0.32 | 309 | 0.21 | 1.3e-05 | -6.19 | 5.92e-10 | 0.53 | FALSE |
PL | Kif16b | alternative polyA | XM_039105041.1 | 0.03 | 2158 | 0.03 | 3.3e-04 | 6.24 | 4.49e-10 | 0.43 | FALSE |
PL | LOC120101719 | alternative polyA | XR_005502514.1 | 0.3 | 1 | 0.35 | 2.0e-39 | 6.25 | 4.17e-10 | 0.22 | FALSE |
PL | LOC120101719 | alternative polyA | XR_005502515.1 | 0.34 | 1 | 0.37 | 4.9e-42 | -6.38 | 1.79e-10 | 0.39 | FALSE |
PL | Otor | gene expression | Otor | 0.04 | 1 | 0.06 | 5.0e-07 | 6.46 | 1.03e-10 | 0.49 | FALSE |
PL | Pcsk2 | gene expression | Pcsk2 | 0.09 | 1455 | 0.15 | 2.6e-16 | 6.18 | 6.59e-10 | 0.3 | FALSE |
PL | Snrpb2 | gene expression | Snrpb2 | 0.1 | 1 | 0.1 | 2.1e-11 | -6.43 | 1.26e-10 | 0.48 | FALSE |
PL | Zfp133 | gene expression | Zfp133 | 0.14 | 1 | 0.14 | 1.6e-15 | 5.41 | 6.28e-08 | 0.34 | TRUE |
PL | LOC120101719 | isoform ratio | XR_005502514.1 | 0.43 | 25 | 0.41 | 5.9e-48 | 5.93 | 3.05e-09 | 0.49 | FALSE |
PL | Snrpb2 | isoform ratio | NM_001108592.3 | 0.05 | 1 | 0.06 | 2.3e-07 | -6.5 | 8.18e-11 | 0.58 | FALSE |
PL | Snrpb2 | isoform ratio | XM_039105470.1 | 0.04 | 1981 | 0.05 | 2.3e-06 | -5.82 | 5.74e-09 | 0.47 | FALSE |
PL | LOC120101719 | intron excision ratio | chr3_130525654_130567132 | 0.26 | 1 | 0.4 | 3.9e-47 | 6.51 | 7.55e-11 | 0.6 | FALSE |
PL | LOC120101719 | intron excision ratio | chr3_130529471_130567132 | 0.13 | 1 | 0.22 | 1.2e-23 | -6.38 | 1.79e-10 | 0.39 | FALSE |
PL | Sec23b | intron excision ratio | chr3_131955920_131958981 | 0.09 | 76 | 0.1 | 5.0e-11 | -5.67 | 1.40e-08 | 0.37 | FALSE |
PL | Snrpb2 | intron excision ratio | chr3_130399307_130400989 | 0.06 | 1 | 0.05 | 2.4e-06 | -6.18 | 6.40e-10 | 0.15 | FALSE |
PL | Snrpb2 | intron excision ratio | chr3_130399832_130400989 | 0.06 | 1981 | 0.06 | 2.7e-07 | -6.28 | 3.36e-10 | 0.44 | FALSE |
PL | Dstn | mRNA stability | Dstn | 0.54 | 137 | 0.41 | 4.7e-48 | -5.65 | 1.61e-08 | 0.08 | FALSE |
PL | Pcsk2 | mRNA stability | Pcsk2 | 0.04 | 1 | 0.03 | 1.1e-04 | 6.6 | 4.02e-11 | 0.66 | FALSE |
PL | Snrpb2 | mRNA stability | Snrpb2 | 0.02 | 1981 | 0.03 | 2.1e-04 | 5.93 | 3.09e-09 | 0.38 | FALSE |
pVTA | Smim26 | alternative polyA | NM_001106520.1 | 0.18 | 15 | 0.14 | 1.4e-06 | -5.3 | 1.17e-07 | 0.38 | FALSE |
pVTA | Smim26 | alternative polyA | XM_006235125.4 | 0.17 | 15 | 0.12 | 7.7e-06 | 5.37 | 7.68e-08 | 0.4 | FALSE |
pVTA | Dtd1 | gene expression | Dtd1 | 0.2 | 15 | 0.19 | 1.7e-08 | -5.32 | 1.06e-07 | 0.31 | FALSE |
pVTA | Otor | gene expression | Otor | 0.11 | 1 | 0.13 | 3.8e-06 | 6.64 | 3.08e-11 | 0.52 | TRUE |
pVTA | Pcsk2 | gene expression | Pcsk2 | 0.46 | 29 | 0.38 | 2.6e-17 | 6.41 | 1.50e-10 | 0.51 | FALSE |
pVTA | Rrbp1 | gene expression | Rrbp1 | 0.32 | 1 | 0.17 | 8.4e-08 | 5.87 | 4.48e-09 | 0.08 | FALSE |
pVTA | Sec23b | gene expression | Sec23b | 0.78 | 339 | 0.74 | 3.2e-46 | -5.27 | 1.40e-07 | 0.28 | FALSE |
pVTA | Snrpb2 | gene expression | Snrpb2 | 0.07 | 1954 | 0.06 | 1.9e-03 | 6.45 | 1.13e-10 | 0.4 | FALSE |
pVTA | Rrbp1 | intron excision ratio | chr3_131351451_131353366 | 0.1 | 94 | 0.06 | 1.5e-03 | -5.84 | 5.32e-09 | 0.63 | FALSE |
pVTA | Dstn | mRNA stability | Dstn | 0.1 | 1 | 0.09 | 9.1e-05 | -6.04 | 1.51e-09 | 0.06 | FALSE |
pVTA | Pcsk2 | mRNA stability | Pcsk2 | 0.11 | 1 | 0.15 | 5.3e-07 | 6.22 | 5.04e-10 | 0.2 | FALSE |
pVTA | Sec23b | mRNA stability | Sec23b | 0.38 | 28 | 0.4 | 1.1e-18 | 5.57 | 2.53e-08 | 0.41 | FALSE |
RMTg | Snrpb2 | alternative TSS | XM_039105470.1 | 0.11 | 1 | 0.08 | 3.2e-03 | 6.18 | 6.40e-10 | 0.05 | FALSE |
RMTg | Otor | gene expression | Otor | 0.1 | 1990 | 0.06 | 1.3e-02 | -6.31 | 2.85e-10 | 0.3 | FALSE |
RMTg | Rrbp1 | gene expression | Rrbp1 | 0.28 | 1 | 0.26 | 1.4e-07 | 5.66 | 1.47e-08 | 0.04 | FALSE |
RMTg | Rbbp9 | isoform ratio | NM_019219.3 | 0.18 | 1822 | 0.11 | 8.3e-04 | -5.41 | 6.28e-08 | 0.49 | FALSE |
RMTg | Sec23b | intron excision ratio | chr3_131955920_131958402 | 0.18 | 1822 | 0.04 | 3.0e-02 | -5.28 | 1.31e-07 | 0.38 | FALSE |
RMTg | Sec23b | intron excision ratio | chr3_131958477_131958981 | 0.16 | 1822 | 0.06 | 9.5e-03 | -5.46 | 4.65e-08 | 0.32 | FALSE |
RMTg | Dstn | mRNA stability | Dstn | 0.1 | 1573 | 0.06 | 8.3e-03 | 6.1 | 1.04e-09 | 0.33 | FALSE |