Best TWAS P=1.53e-10 · Best GWAS P=5.24e-09 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Ncoa1 | alternative polyA | ENSRNOT00000105343 | 0.04 | 576 | 0.01 | 3.6e-02 | -5.73 | 1.03e-08 | 0.35 | TRUE |
Adipose | Ncoa1 | alternative polyA | ENSRNOT00000110405 | 0.04 | 6 | 0.01 | 1.5e-02 | 6.13 | 8.61e-10 | 0.38 | FALSE |
Adipose | Dnajc27 | gene expression | ENSRNOG00000003988 | 0.59 | 90 | 0.35 | 1.1e-39 | 5.26 | 1.47e-07 | 0.32 | FALSE |
Adipose | Adcy3 | gene expression | ENSRNOG00000003999 | 0.39 | 1 | 0.12 | 1.2e-13 | -5.61 | 2.03e-08 | 0.81 | FALSE |
Adipose | Klhl29 | gene expression | ENSRNOG00000005371 | 0.13 | 21 | 0.04 | 1.1e-05 | -5.13 | 2.84e-07 | 0.81 | FALSE |
Adipose | ENSRNOG00000066171 | isoform ratio | ENSRNOT00000114599 | 0.09 | 1 | 0.05 | 3.2e-06 | -5.58 | 2.39e-08 | 0.73 | FALSE |
BLA | Efr3b | gene expression | ENSRNOG00000012950 | 0.17 | 8 | 0.13 | 1.2e-07 | -5.22 | 1.83e-07 | 0.41 | FALSE |
BLA | Ubxn2a | intron excision ratio | chr6:27893322:27894997 | 0.04 | 11 | 0.03 | 1.2e-02 | 5.55 | 2.89e-08 | 0.44 | FALSE |
BLA | Efr3b | mRNA stability | ENSRNOG00000012950 | 0.15 | 1188 | 0.13 | 1.2e-07 | -5.1 | 3.33e-07 | 0.34 | FALSE |
Brain | Dnajc27 | gene expression | ENSRNOG00000003988 | 0.03 | 1155 | 0.03 | 1.0e-03 | 5.31 | 1.09e-07 | 0.45 | FALSE |
Brain | Ncoa1 | gene expression | ENSRNOG00000004068 | 0.19 | 4 | 0.14 | 5.5e-13 | 5.33 | 9.78e-08 | 0.78 | FALSE |
Brain | Efr3b | gene expression | ENSRNOG00000012950 | 0.19 | 1 | 0.14 | 1.0e-12 | -5.57 | 2.48e-08 | 0.81 | FALSE |
Brain | ENSRNOG00000066171 | isoform ratio | ENSRNOT00000099733 | 0.05 | 32 | 0.03 | 2.1e-03 | -6.4 | 1.53e-10 | 0.66 | TRUE |
Brain | ENSRNOG00000066171 | intron excision ratio | chr6:27482426:27483205 | 0.02 | 1 | 0.03 | 2.0e-03 | -5.19 | 2.09e-07 | 0.03 | FALSE |
Brain | Efr3b | mRNA stability | ENSRNOG00000012950 | 0.2 | 27 | 0.15 | 4.7e-14 | -5.34 | 9.29e-08 | 0.53 | FALSE |
Eye | Efr3b | alternative TSS | ENSRNOT00000068214 | 0.32 | 1 | 0.09 | 1.8e-02 | -5.17 | 2.28e-07 | 0.06 | FALSE |
IL | Efr3b | gene expression | ENSRNOG00000012950 | 0.47 | 1 | 0.33 | 1.1e-08 | -5.22 | 1.76e-07 | 0.31 | FALSE |
IL | Efr3b | mRNA stability | ENSRNOG00000012950 | 0.21 | 8 | 0.22 | 6.2e-06 | -5.29 | 1.22e-07 | 0.45 | TRUE |
LHb | Dtnb | isoform ratio | ENSRNOT00000060810 | 0.19 | 1 | 0.13 | 6.0e-04 | -5.22 | 1.78e-07 | 0.07 | FALSE |
LHb | Dtnb | isoform ratio | ENSRNOT00000094568 | 0.47 | 1 | 0.08 | 5.0e-03 | 5.22 | 1.78e-07 | 0.06 | FALSE |
LHb | ENSRNOG00000066171 | isoform ratio | ENSRNOT00000099733 | 0.13 | 1 | 0.11 | 1.8e-03 | -5.52 | 3.44e-08 | 0.06 | FALSE |
LHb | Efr3b | mRNA stability | ENSRNOG00000012950 | 0.12 | 1187 | 0.1 | 2.6e-03 | -5.3 | 1.15e-07 | 0.42 | FALSE |
Liver | Ncoa1 | alternative polyA | ENSRNOT00000068531 | 0.05 | 1 | 0.01 | 1.2e-02 | 5.39 | 6.88e-08 | 0.03 | FALSE |
Liver | Fam228b | alternative polyA | ENSRNOT00000113530 | 0.04 | 1 | 0.03 | 8.2e-04 | 5.68 | 1.37e-08 | 0.07 | FALSE |
Liver | Fam228b | alternative polyA | ENSRNOT00000114842 | 0.04 | 1 | 0.03 | 3.0e-04 | -5.68 | 1.37e-08 | 0.31 | FALSE |
Liver | Adcy3 | gene expression | ENSRNOG00000003999 | 0.29 | 1 | 0.14 | 2.3e-15 | -5.53 | 3.19e-08 | 0.73 | FALSE |
Liver | Ncoa1 | gene expression | ENSRNOG00000004068 | 0.06 | 576 | 0.02 | 3.2e-03 | -5.89 | 3.75e-09 | 0.64 | FALSE |
Liver | Fam228b | gene expression | ENSRNOG00000049615 | 0.19 | 1 | 0.11 | 1.8e-12 | -5.8 | 6.74e-09 | 0.94 | FALSE |
Liver | Ncoa1 | isoform ratio | ENSRNOT00000068531 | 0.04 | 1 | 0.04 | 8.5e-05 | 5.48 | 4.28e-08 | 0.2 | FALSE |
Liver | Ncoa1 | isoform ratio | ENSRNOT00000110405 | 0.02 | 1 | 0.02 | 4.2e-03 | -5.48 | 4.28e-08 | 0.03 | FALSE |
Liver | Cenpo | mRNA stability | ENSRNOG00000050111 | 0.27 | 1 | 0.02 | 3.9e-03 | 5.8 | 6.74e-09 | 0.06 | FALSE |
NAcc | Dnajc27 | gene expression | ENSRNOG00000003988 | 0.08 | 1154 | 0.11 | 2.7e-08 | 5.23 | 1.68e-07 | 0.36 | FALSE |
NAcc | Efr3b | gene expression | ENSRNOG00000012950 | 0.19 | 1187 | 0.2 | 5.3e-15 | -5.25 | 1.54e-07 | 0.45 | FALSE |
NAcc | ENSRNOG00000066171 | isoform ratio | ENSRNOT00000099733 | 0.06 | 482 | 0.02 | 1.2e-02 | -5.76 | 8.65e-09 | 0.49 | FALSE |
OFC | Ncoa1 | alternative polyA | ENSRNOT00000068531 | 0.13 | 576 | 0.08 | 5.3e-03 | 5.4 | 6.66e-08 | 0.41 | FALSE |
OFC | Ncoa1 | alternative polyA | ENSRNOT00000110405 | 0.13 | 576 | 0.07 | 7.8e-03 | -5.65 | 1.58e-08 | 0.42 | FALSE |
OFC | Itsn2 | intron excision ratio | chr6:27617212:27638176 | 0.24 | 3 | 0.12 | 9.0e-04 | 5.51 | 3.53e-08 | 0.43 | TRUE |
PL | Dnajc27 | gene expression | ENSRNOG00000003988 | 0.18 | 1154 | 0.04 | 6.1e-04 | 5.17 | 2.40e-07 | 0.64 | FALSE |
PL | Adcy3 | gene expression | ENSRNOG00000003999 | 0.05 | 1 | 0.03 | 3.4e-03 | -5.41 | 6.40e-08 | 0.04 | FALSE |
PL | Efr3b | gene expression | ENSRNOG00000012950 | 0.47 | 64 | 0.42 | 7.2e-34 | -5.27 | 1.34e-07 | 0.45 | FALSE |
PL | Itsn2 | gene expression | ENSRNOG00000046741 | 0.02 | 1 | 0.03 | 4.6e-03 | 5.53 | 3.27e-08 | 0.07 | FALSE |
PL | Ncoa1 | intron excision ratio | chr6:27234917:27235003 | 0.04 | 1 | 0.02 | 2.2e-02 | -5.57 | 2.48e-08 | 0.05 | FALSE |
PL | Efr3b | mRNA stability | ENSRNOG00000012950 | 0.2 | 8 | 0.26 | 1.6e-19 | -5.16 | 2.42e-07 | 0.53 | FALSE |