Best TWAS P=3.917889e-12 · Best GWAS P=4.028728e-12 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000001468 | 0.04 | 0.00 | blup | 681 | 0.01 | 6.8e-02 | 6.46 | -5.4 | 7.7e-08 | -0.60 | 0.13 | 0.20 | FALSE |
2 | Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.14 | 0.12 | top1 | 1 | 0.12 | 7.1e-13 | 6.46 | -6.5 | 1.0e-10 | -0.83 | 0.30 | 0.70 | FALSE |
3 | Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.14 | 0.12 | top1 | 1 | 0.12 | 3.9e-13 | 6.46 | 6.5 | 1.0e-10 | 0.83 | 0.30 | 0.70 | FALSE |
4 | Adipose | Timm44 | alternative TSS | ENSRNOT00000001409 | 0.10 | 0.01 | blup | 2334 | 0.02 | 4.9e-03 | 3.23 | 5.3 | 9.0e-08 | 0.76 | 0.28 | 0.25 | FALSE |
5 | Adipose | Timm44 | alternative TSS | ENSRNOT00000001409 | 0.12 | 0.01 | blup | 2334 | 0.02 | 4.7e-03 | 3.23 | 5.6 | 1.7e-08 | 0.82 | 0.22 | 0.30 | FALSE |
6 | Adipose | Timm44 | alternative TSS | ENSRNOT00000096445 | 0.11 | 0.01 | blup | 2334 | 0.01 | 7.9e-03 | 3.23 | -5.5 | 3.9e-08 | -0.80 | 0.24 | 0.29 | FALSE |
7 | Adipose | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.22 | 0.10 | enet | 116 | 0.13 | 3.4e-14 | 6.39 | -6.5 | 9.2e-11 | -0.78 | 0.42 | 0.58 | FALSE |
8 | Adipose | Pet100 | alternative TSS | ENSRNOT00000107172 | 0.22 | 0.10 | enet | 122 | 0.13 | 2.6e-14 | 5.11 | 6.5 | 9.6e-11 | 0.78 | 0.44 | 0.56 | FALSE |
9 | Adipose | Xab2 | gene expression | ENSRNOG00000000988 | 0.14 | 0.05 | top1 | 1 | 0.05 | 2.2e-06 | 6.59 | 6.6 | 4.4e-11 | 0.80 | 0.08 | 0.90 | FALSE |
10 | Adipose | Trappc5 | gene expression | ENSRNOG00000001003 | 0.09 | 0.03 | top1 | 1 | 0.03 | 9.9e-05 | 6.40 | 6.4 | 1.6e-10 | 0.50 | 0.10 | 0.23 | FALSE |
11 | Adipose | Evi5l | gene expression | ENSRNOG00000001034 | 0.09 | 0.00 | top1 | 1 | 0.00 | 4.2e-01 | 6.12 | -6.1 | 9.2e-10 | -0.63 | 0.06 | 0.03 | FALSE |
12 | Adipose | Insr | gene expression | ENSRNOG00000029986 | 0.13 | 0.02 | top1 | 1 | 0.02 | 4.3e-03 | 6.29 | -6.3 | 3.1e-10 | -0.80 | 0.05 | 0.03 | FALSE |
13 | Adipose | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.32 | 0.23 | lasso | 16 | 0.24 | 1.2e-26 | 6.63 | 6.6 | 3.1e-11 | 0.66 | 0.11 | 0.89 | FALSE |
14 | Adipose | Timm44 | isoform ratio | ENSRNOT00000096445 | 0.08 | 0.00 | enet | 152 | 0.01 | 3.5e-02 | 6.66 | -6.1 | 8.5e-10 | -0.91 | 0.16 | 0.36 | FALSE |
15 | Adipose | Timm44 | isoform ratio | ENSRNOT00000098717 | 0.08 | 0.00 | enet | 173 | 0.00 | 1.2e-01 | 6.66 | 6.1 | 9.6e-10 | 0.91 | 0.15 | 0.33 | FALSE |
16 | Adipose | N4bp2l2 | isoform ratio | ENSRNOT00000001468 | 0.05 | 0.01 | blup | 681 | 0.02 | 6.1e-03 | 6.46 | -5.8 | 5.7e-09 | -0.78 | 0.15 | 0.65 | FALSE |
17 | Adipose | Pet100 | isoform ratio | ENSRNOT00000071928 | 0.23 | 0.11 | enet | 64 | 0.13 | 1.8e-14 | 6.39 | -6.5 | 8.3e-11 | -0.76 | 0.33 | 0.67 | FALSE |
18 | Adipose | Pet100 | isoform ratio | ENSRNOT00000107172 | 0.23 | 0.09 | enet | 66 | 0.13 | 2.6e-14 | 6.39 | 6.5 | 8.0e-11 | 0.77 | 0.32 | 0.68 | FALSE |
19 | Adipose | Zfp958 | isoform ratio | ENSRNOT00000102786 | 0.03 | 0.00 | enet | 169 | 0.01 | 6.9e-03 | 6.73 | -6.7 | 1.8e-11 | -0.97 | 0.23 | 0.46 | FALSE |
20 | Adipose | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.03 | 0.00 | blup | 1113 | 0.01 | 2.8e-02 | 6.56 | -6.6 | 4.0e-11 | -0.86 | 0.17 | 0.39 | FALSE |
21 | Adipose | Zfp958 | intron excision ratio | chr12:3971128:3973820 | 0.04 | 0.01 | blup | 1113 | 0.02 | 5.3e-03 | 6.68 | 6.3 | 3.9e-10 | 0.98 | 0.21 | 0.53 | FALSE |
22 | Adipose | Fry | mRNA stability | ENSRNOG00000000894 | 0.08 | 0.05 | blup | 2970 | 0.05 | 2.0e-06 | 4.88 | 5.6 | 2.3e-08 | 0.73 | 1.00 | 0.00 | FALSE |
23 | Adipose | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.11 | 0.00 | enet | 19 | 0.01 | 5.0e-02 | 3.58 | 6.8 | 1.2e-11 | 0.68 | 0.47 | 0.04 | FALSE |
24 | Adipose | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 0.06 | blup | 2406 | 0.07 | 9.4e-09 | 6.61 | -6.7 | 2.9e-11 | -0.85 | 0.23 | 0.77 | FALSE |
25 | BLA | Pet100 | alternative TSS | ENSRNOT00000110166 | 0.11 | 0.05 | top1 | 1 | 0.05 | 7.7e-04 | 6.65 | 6.6 | 3.0e-11 | 0.44 | 0.07 | 0.12 | FALSE |
26 | BLA | Slc7a1 | gene expression | ENSRNOG00000000924 | 0.15 | 0.08 | blup | 2756 | 0.09 | 2.5e-05 | -4.42 | -5.4 | 7.0e-08 | -0.37 | 0.72 | 0.27 | FALSE |
27 | BLA | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.19 | 0.13 | top1 | 1 | 0.13 | 1.6e-07 | 5.11 | 5.1 | 3.3e-07 | 0.45 | 0.66 | 0.01 | FALSE |
28 | BLA | Snapc2 | gene expression | ENSRNOG00000001056 | 0.16 | 0.03 | enet | 261 | 0.08 | 4.4e-05 | 6.29 | 5.4 | 7.0e-08 | 0.86 | 0.31 | 0.59 | FALSE |
29 | BLA | Stard13 | gene expression | ENSRNOG00000001090 | 0.17 | 0.13 | top1 | 1 | 0.13 | 2.4e-07 | 6.70 | -6.7 | 2.1e-11 | -0.98 | 0.11 | 0.85 | FALSE |
30 | BLA | Brca2 | gene expression | ENSRNOG00000001111 | 0.36 | 0.24 | top1 | 1 | 0.24 | 5.4e-13 | 6.39 | -6.4 | 1.6e-10 | -0.97 | 0.18 | 0.82 | FALSE |
31 | BLA | Insr | gene expression | ENSRNOG00000029986 | 0.59 | 0.33 | blup | 1546 | 0.39 | 5.5e-22 | 6.57 | -6.8 | 1.3e-11 | -0.97 | 0.17 | 0.83 | FALSE |
32 | BLA | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.13 | 0.08 | top1 | 1 | 0.08 | 5.7e-05 | 5.39 | 5.4 | 6.9e-08 | 0.77 | 0.15 | 0.04 | FALSE |
33 | BLA | Camsap3 | isoform ratio | ENSRNOT00000096347 | 0.13 | 0.01 | lasso | 20 | 0.03 | 9.2e-03 | 6.41 | 6.5 | 7.0e-11 | 0.98 | 0.14 | 0.81 | FALSE |
34 | BLA | Camsap3 | isoform ratio | ENSRNOT00000101379 | 0.13 | 0.06 | top1 | 1 | 0.06 | 4.4e-04 | 6.65 | -6.6 | 3.0e-11 | -0.65 | 0.07 | 0.17 | FALSE |
35 | BLA | Insr | intron excision ratio | chr12:1257822:1307450 | 0.67 | 0.21 | enet | 213 | 0.35 | 9.1e-20 | 6.40 | -5.1 | 2.7e-07 | -0.59 | 0.36 | 0.64 | FALSE |
36 | BLA | Pet100 | intron excision ratio | chr12:1679962:1680708 | 0.26 | 0.09 | enet | 58 | 0.10 | 6.0e-06 | 6.40 | 5.7 | 1.0e-08 | 0.91 | 0.13 | 0.86 | FALSE |
37 | BLA | Pet100 | intron excision ratio | chr12:1680171:1680708 | 0.18 | 0.06 | lasso | 15 | 0.07 | 1.5e-04 | 6.65 | -5.8 | 6.9e-09 | -0.88 | 0.14 | 0.83 | FALSE |
38 | BLA | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.36 | 0.12 | lasso | 13 | 0.19 | 1.7e-10 | 6.12 | 6.3 | 3.8e-10 | 0.81 | 0.28 | 0.72 | FALSE |
39 | BLA | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.35 | 0.12 | lasso | 11 | 0.20 | 9.8e-11 | 6.12 | -6.0 | 1.5e-09 | -0.71 | 0.29 | 0.71 | FALSE |
40 | BLA | NA | intron excision ratio | chr12:3870992:3873703 | 0.08 | 0.03 | blup | 1116 | 0.04 | 3.3e-03 | 6.61 | 6.8 | 1.2e-11 | 0.99 | 0.25 | 0.63 | FALSE |
41 | BLA | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.57 | 0.22 | lasso | 16 | 0.30 | 1.5e-16 | 6.14 | 5.6 | 1.8e-08 | 0.80 | 0.64 | 0.36 | FALSE |
42 | BLA | Cers4 | mRNA stability | ENSRNOG00000001072 | 0.16 | 0.06 | blup | 2109 | 0.08 | 5.0e-05 | 6.61 | -6.3 | 3.1e-10 | -0.81 | 0.32 | 0.67 | TRUE |
43 | BLA | Stard13 | mRNA stability | ENSRNOG00000001090 | 0.08 | 0.05 | blup | 1438 | 0.05 | 1.3e-03 | 5.00 | -5.8 | 5.3e-09 | -0.81 | 0.48 | 0.33 | FALSE |
44 | BLA | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.19 | 0.12 | top1 | 1 | 0.12 | 9.3e-07 | 6.39 | -6.4 | 1.6e-10 | -0.97 | 0.17 | 0.77 | FALSE |
45 | BLA | Insr | mRNA stability | ENSRNOG00000029986 | 0.74 | 0.40 | enet | 153 | 0.48 | 1.6e-28 | 6.39 | -5.4 | 6.1e-08 | -0.65 | 0.36 | 0.64 | FALSE |
46 | Brain | Pet100 | alternative TSS | ENSRNOT00000110166 | 0.04 | 0.01 | enet | 129 | 0.03 | 1.7e-03 | -0.88 | 5.9 | 4.0e-09 | 0.55 | 0.54 | 0.19 | FALSE |
47 | Brain | Zfp958 | alternative TSS | ENSRNOT00000103468 | 0.17 | 0.12 | blup | 1115 | 0.13 | 7.5e-12 | 4.48 | -6.1 | 1.1e-09 | -0.82 | 0.99 | 0.01 | FALSE |
48 | Brain | Zfp958 | alternative TSS | ENSRNOT00000104360 | 0.17 | 0.12 | lasso | 14 | 0.13 | 1.0e-11 | 4.48 | 5.5 | 3.1e-08 | 0.69 | 0.99 | 0.01 | FALSE |
49 | Brain | NA | alternative TSS | ENSRNOT00000113560 | 0.08 | 0.03 | enet | 245 | 0.05 | 1.7e-05 | -0.26 | 5.8 | 6.7e-09 | 0.86 | 0.64 | 0.21 | TRUE |
50 | Brain | NA | alternative TSS | ENSRNOT00000115928 | 0.08 | 0.03 | enet | 60 | 0.05 | 1.4e-05 | -0.26 | -6.3 | 2.4e-10 | -0.83 | 0.62 | 0.23 | FALSE |
51 | Brain | Rxfp2 | gene expression | ENSRNOG00000000897 | 0.13 | 0.07 | blup | 3311 | 0.12 | 3.5e-11 | 4.06 | 6.1 | 1.3e-09 | 0.81 | 0.99 | 0.01 | TRUE |
52 | Brain | Elavl1 | gene expression | ENSRNOG00000001069 | 0.07 | 0.01 | blup | 2406 | 0.02 | 4.4e-03 | 6.35 | 6.5 | 5.9e-11 | 0.90 | 0.30 | 0.61 | FALSE |
53 | Brain | Stard13 | gene expression | ENSRNOG00000001090 | 0.18 | 0.10 | enet | 34 | 0.14 | 6.7e-13 | 6.40 | -5.6 | 1.7e-08 | -0.88 | 0.24 | 0.76 | FALSE |
54 | Brain | Brca2 | gene expression | ENSRNOG00000001111 | 0.42 | 0.32 | lasso | 21 | 0.33 | 6.8e-31 | 6.47 | -6.4 | 1.9e-10 | -0.97 | 0.09 | 0.91 | FALSE |
55 | Brain | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.12 | 0.06 | enet | 11 | 0.08 | 1.2e-07 | 6.54 | 6.7 | 1.6e-11 | 0.91 | 0.22 | 0.78 | FALSE |
56 | Brain | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.06 | 0.05 | lasso | 2 | 0.05 | 3.5e-05 | 6.45 | 6.5 | 1.1e-10 | 0.82 | 0.14 | 0.84 | FALSE |
57 | Brain | NA | gene expression | ENSRNOG00000068850 | 0.09 | 0.01 | blup | 2325 | 0.03 | 1.5e-03 | 3.11 | 5.5 | 4.8e-08 | 0.80 | 0.35 | 0.48 | FALSE |
58 | Brain | Trappc5 | intron excision ratio | chr12:1737769:1740114 | 0.05 | 0.02 | enet | 18 | 0.03 | 5.1e-04 | 4.92 | 6.9 | 4.6e-12 | 0.74 | 0.49 | 0.35 | FALSE |
59 | Brain | Insr | intron excision ratio | chr12:1257822:1307450 | 0.63 | 0.41 | enet | 224 | 0.46 | 1.8e-47 | 6.21 | -5.3 | 1.0e-07 | -0.62 | 0.37 | 0.63 | FALSE |
60 | Brain | Pet100 | intron excision ratio | chr12:1679962:1680708 | 0.28 | 0.08 | lasso | 29 | 0.11 | 1.4e-10 | 6.49 | 5.3 | 1.2e-07 | 0.82 | 0.12 | 0.88 | FALSE |
61 | Brain | Zfp958 | intron excision ratio | chr12:3971128:3973820 | 0.21 | 0.14 | enet | 38 | 0.16 | 4.9e-15 | 6.63 | 6.0 | 1.9e-09 | 0.93 | 0.28 | 0.72 | FALSE |
62 | Brain | Zfp958 | intron excision ratio | chr12:3971391:3973820 | 0.08 | 0.01 | blup | 1115 | 0.02 | 5.7e-03 | 6.63 | -5.5 | 3.4e-08 | -0.86 | 0.22 | 0.51 | FALSE |
63 | Brain | NA | intron excision ratio | chr12:3870992:3873703 | 0.13 | 0.10 | lasso | 14 | 0.10 | 1.0e-09 | 6.70 | 6.7 | 2.1e-11 | 1.00 | 0.26 | 0.74 | FALSE |
64 | Brain | Slc7a1 | mRNA stability | ENSRNOG00000000924 | 0.21 | 0.16 | enet | 174 | 0.16 | 4.3e-15 | -4.68 | -5.7 | 1.5e-08 | -0.56 | 0.65 | 0.35 | FALSE |
65 | Brain | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.19 | 0.03 | lasso | 22 | 0.07 | 2.6e-07 | 6.70 | -6.7 | 1.7e-11 | -0.56 | 0.25 | 0.75 | FALSE |
66 | Brain | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.29 | 0.17 | lasso | 14 | 0.18 | 3.2e-16 | 6.47 | -6.5 | 1.0e-10 | -0.97 | 0.08 | 0.92 | FALSE |
67 | Brain | Insr | mRNA stability | ENSRNOG00000029986 | 0.72 | 0.55 | enet | 150 | 0.60 | 8.8e-69 | 6.21 | -5.6 | 1.8e-08 | -0.67 | 0.36 | 0.64 | FALSE |
68 | Eye | Fry | gene expression | ENSRNOG00000000894 | 0.41 | 0.13 | blup | 2972 | 0.18 | 9.6e-04 | 4.34 | 5.3 | 9.3e-08 | 0.69 | 0.52 | 0.07 | FALSE |
69 | Eye | Elavl1 | intron excision ratio | chr12:2667464:2684652 | 0.69 | 0.25 | lasso | 30 | 0.31 | 1.3e-05 | 6.38 | -6.6 | 5.3e-11 | -0.86 | 0.24 | 0.60 | FALSE |
70 | IL | Zfp958l1 | alternative TSS | ENSRNOT00000035992 | 0.20 | 0.00 | top1 | 1 | 0.00 | 2.5e-01 | 6.63 | -6.6 | 3.4e-11 | -0.96 | 0.10 | 0.06 | FALSE |
71 | IL | Zfp958l1 | alternative TSS | ENSRNOT00000119165 | 0.19 | 0.02 | top1 | 1 | 0.02 | 1.3e-01 | 6.63 | 6.6 | 3.4e-11 | 0.97 | 0.10 | 0.06 | FALSE |
72 | IL | Snapc2 | gene expression | ENSRNOG00000001056 | 0.35 | 0.00 | lasso | 5 | 0.03 | 8.2e-02 | 3.58 | 5.4 | 5.5e-08 | 0.60 | 0.29 | 0.25 | FALSE |
73 | IL | Insr | intron excision ratio | chr12:1257822:1307450 | 0.73 | 0.50 | top1 | 1 | 0.50 | 6.5e-14 | 6.21 | -6.2 | 5.3e-10 | -0.68 | 0.64 | 0.35 | FALSE |
74 | IL | Pds5b | mRNA stability | ENSRNOG00000001098 | 0.19 | 0.08 | blup | 795 | 0.11 | 1.5e-03 | 5.96 | -5.6 | 2.7e-08 | -0.61 | 0.19 | 0.18 | FALSE |
75 | IL | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.16 | 0.06 | lasso | 1 | 0.08 | 4.7e-03 | 5.15 | -5.1 | 2.6e-07 | -0.58 | 0.20 | 0.13 | FALSE |
76 | LHb | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.19 | 0.12 | top1 | 1 | 0.12 | 9.6e-04 | 5.92 | -5.9 | 3.2e-09 | -0.62 | 0.03 | 0.06 | FALSE |
77 | Liver | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.06 | 0.02 | top1 | 1 | 0.02 | 1.5e-03 | 6.08 | -6.1 | 1.2e-09 | -0.95 | 0.03 | 0.03 | FALSE |
78 | Liver | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.10 | 0.04 | blup | 681 | 0.07 | 2.3e-08 | 6.43 | -6.9 | 3.9e-12 | -0.95 | 0.16 | 0.84 | TRUE |
79 | Liver | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.10 | 0.04 | blup | 681 | 0.07 | 1.5e-08 | 6.43 | 6.9 | 4.1e-12 | 0.95 | 0.16 | 0.84 | FALSE |
80 | Liver | Mcoln1 | gene expression | ENSRNOG00000000975 | 0.09 | 0.04 | lasso | 39 | 0.04 | 1.7e-05 | 6.38 | -6.4 | 1.7e-10 | -0.83 | 0.25 | 0.74 | FALSE |
81 | Liver | Timm44 | gene expression | ENSRNOG00000001058 | 0.11 | 0.03 | enet | 10 | 0.04 | 7.4e-05 | 3.72 | -5.5 | 4.1e-08 | -0.62 | 0.91 | 0.05 | FALSE |
82 | Liver | Brca2 | gene expression | ENSRNOG00000001111 | 0.04 | 0.02 | top1 | 1 | 0.02 | 1.7e-03 | 5.39 | -5.4 | 6.9e-08 | -0.58 | 0.03 | 0.03 | FALSE |
83 | Liver | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.21 | 0.13 | enet | 107 | 0.16 | 2.5e-17 | 6.38 | 6.1 | 1.0e-09 | 0.71 | 0.15 | 0.85 | FALSE |
84 | Liver | Stxbp2 | isoform ratio | ENSRNOT00000107607 | 0.15 | 0.09 | lasso | 10 | 0.09 | 5.9e-10 | 4.86 | 5.8 | 6.7e-09 | 0.73 | 0.60 | 0.41 | FALSE |
85 | Liver | N4bp2l1 | isoform ratio | ENSRNOT00000085295 | 0.07 | 0.05 | top1 | 1 | 0.05 | 4.9e-06 | 6.08 | 6.1 | 1.2e-09 | 0.85 | 0.35 | 0.14 | FALSE |
86 | Liver | N4bp2l1 | isoform ratio | ENSRNOT00000110394 | 0.06 | 0.03 | blup | 587 | 0.04 | 6.9e-05 | 6.43 | -6.7 | 1.9e-11 | -0.94 | 0.12 | 0.88 | FALSE |
87 | Liver | Zfp958 | isoform ratio | ENSRNOT00000102786 | 0.05 | 0.02 | enet | 14 | 0.02 | 1.6e-03 | 6.72 | -5.2 | 1.8e-07 | -0.67 | 0.24 | 0.56 | FALSE |
88 | Liver | Zfp958l1 | intron excision ratio | chr12:4420448:4438512 | 0.04 | 0.02 | enet | 55 | 0.03 | 2.6e-04 | 6.47 | -6.8 | 1.3e-11 | -0.31 | 0.42 | 0.50 | FALSE |
89 | Liver | Insr | intron excision ratio | chr12:1257822:1307450 | 0.44 | 0.21 | enet | 94 | 0.21 | 3.2e-23 | 6.40 | -5.9 | 3.4e-09 | -0.74 | 0.37 | 0.63 | FALSE |
90 | Liver | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.21 | 0.04 | blup | 1823 | 0.09 | 1.9e-10 | 4.99 | 6.3 | 2.2e-10 | 0.86 | 0.56 | 0.44 | FALSE |
91 | Liver | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.18 | 0.05 | enet | 152 | 0.07 | 3.1e-08 | 6.38 | -5.2 | 2.2e-07 | -0.48 | 0.26 | 0.74 | FALSE |
92 | Liver | Zfp958 | intron excision ratio | chr12:3953566:3958666 | 0.03 | 0.00 | blup | 1113 | 0.01 | 1.1e-02 | 4.57 | 6.3 | 2.4e-10 | 0.79 | 0.26 | 0.27 | FALSE |
93 | Liver | Zfp958 | intron excision ratio | chr12:3953566:3967085 | 0.09 | 0.04 | top1 | 1 | 0.04 | 1.5e-05 | 6.56 | -6.6 | 5.3e-11 | -1.00 | 0.21 | 0.28 | FALSE |
94 | Liver | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.07 | 0.03 | top1 | 1 | 0.03 | 7.0e-04 | 6.61 | -6.6 | 3.8e-11 | -0.93 | 0.06 | 0.09 | FALSE |
95 | Liver | Zfp958 | intron excision ratio | chr12:3971128:3973820 | 0.23 | 0.11 | blup | 1113 | 0.12 | 2.4e-13 | 6.61 | 6.4 | 1.4e-10 | 0.99 | 0.27 | 0.73 | FALSE |
96 | Liver | Zfp958 | intron excision ratio | chr12:3971391:3973820 | 0.21 | 0.10 | blup | 1113 | 0.11 | 8.9e-12 | 6.73 | -6.4 | 1.3e-10 | -0.99 | 0.26 | 0.74 | FALSE |
97 | Liver | NA | intron excision ratio | chr12:3870992:3871195 | 0.09 | 0.04 | top1 | 1 | 0.04 | 1.0e-05 | 6.69 | -6.7 | 2.2e-11 | -0.99 | 0.13 | 0.38 | FALSE |
98 | Liver | NA | intron excision ratio | chr12:3870992:3873703 | 0.18 | 0.10 | top1 | 1 | 0.10 | 7.7e-11 | 6.73 | 6.7 | 1.7e-11 | 0.99 | 0.20 | 0.80 | FALSE |
99 | Liver | NA | intron excision ratio | chr12:3871255:3873703 | 0.14 | 0.09 | top1 | 1 | 0.09 | 6.4e-10 | 6.61 | -6.6 | 3.8e-11 | -1.00 | 0.36 | 0.64 | FALSE |
100 | Liver | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 0.05 | lasso | 4 | 0.05 | 3.3e-06 | 6.35 | -6.4 | 1.1e-10 | -0.96 | 0.26 | 0.74 | FALSE |
101 | Liver | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.03 | 0.02 | top1 | 1 | 0.02 | 2.0e-03 | 6.45 | -6.5 | 1.1e-10 | -0.86 | 0.03 | 0.05 | FALSE |
102 | Liver | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.15 | 0.07 | top1 | 1 | 0.07 | 2.0e-08 | 6.08 | -6.1 | 1.2e-09 | -0.90 | 0.61 | 0.38 | FALSE |
103 | Liver | Insr | mRNA stability | ENSRNOG00000029986 | 0.69 | 0.39 | enet | 78 | 0.41 | 3.0e-48 | 6.40 | -5.4 | 6.5e-08 | -0.60 | 0.37 | 0.63 | FALSE |
104 | NAcc | Insr | intron excision ratio | chr12:1257822:1307450 | 0.83 | 0.34 | top1 | 1 | 0.34 | 1.8e-08 | 6.21 | -6.2 | 5.3e-10 | -0.77 | 0.48 | 0.27 | FALSE |
105 | NAcc | Insr | mRNA stability | ENSRNOG00000029986 | 0.41 | 0.14 | lasso | 2 | 0.15 | 2.9e-04 | 6.24 | -6.2 | 4.5e-10 | -0.81 | 0.23 | 0.41 | FALSE |
106 | NAcc2 | Zfp958l1 | gene expression | ENSRNOG00000000891 | 0.17 | 0.12 | blup | 1966 | 0.13 | 1.4e-07 | 6.57 | 6.6 | 5.0e-11 | 0.99 | 0.35 | 0.65 | FALSE |
107 | NAcc2 | Rxfp2 | gene expression | ENSRNOG00000000897 | 0.05 | 0.02 | blup | 3311 | 0.02 | 2.2e-02 | 5.11 | 6.2 | 5.1e-10 | 0.85 | 0.60 | 0.21 | FALSE |
108 | NAcc2 | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.20 | 0.12 | top1 | 1 | 0.12 | 7.1e-07 | 6.65 | 6.6 | 3.0e-11 | 0.85 | 0.05 | 0.92 | FALSE |
109 | NAcc2 | Stard13 | gene expression | ENSRNOG00000001090 | 0.31 | 0.21 | blup | 1438 | 0.29 | 4.7e-16 | 6.49 | -5.2 | 1.8e-07 | -0.78 | 0.23 | 0.77 | FALSE |
110 | NAcc2 | Brca2 | gene expression | ENSRNOG00000001111 | 0.38 | 0.30 | top1 | 1 | 0.30 | 1.6e-16 | 5.49 | -5.5 | 4.1e-08 | -0.97 | 0.98 | 0.02 | FALSE |
111 | NAcc2 | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.14 | 0.05 | blup | 1531 | 0.09 | 2.0e-05 | 6.56 | 6.6 | 5.2e-11 | 0.89 | 0.31 | 0.69 | FALSE |
112 | NAcc2 | Lrrc8e | gene expression | ENSRNOG00000028460 | 0.37 | 0.08 | lasso | 7 | 0.09 | 1.8e-05 | 6.14 | 6.5 | 8.6e-11 | 0.90 | 0.27 | 0.60 | FALSE |
113 | NAcc2 | Insr | gene expression | ENSRNOG00000029986 | 0.81 | 0.31 | enet | 48 | 0.38 | 8.3e-22 | 6.57 | -6.3 | 3.8e-10 | -0.77 | 0.17 | 0.83 | FALSE |
114 | NAcc2 | Zfp958 | gene expression | ENSRNOG00000065430 | 0.14 | 0.08 | blup | 1115 | 0.14 | 5.4e-08 | 6.71 | 6.7 | 2.7e-11 | 0.87 | 0.27 | 0.73 | FALSE |
115 | NAcc2 | Insr | intron excision ratio | chr12:1257822:1307450 | 0.36 | 0.15 | top1 | 1 | 0.15 | 1.0e-08 | 6.36 | -6.4 | 2.1e-10 | -0.79 | 0.42 | 0.57 | FALSE |
116 | NAcc2 | Zfp958 | intron excision ratio | chr12:3971128:3973820 | 0.08 | 0.01 | blup | 1115 | 0.01 | 5.3e-02 | 6.66 | 5.9 | 3.8e-09 | 0.95 | 0.26 | 0.60 | TRUE |
117 | NAcc2 | NA | intron excision ratio | chr12:3871255:3873703 | 0.10 | 0.07 | top1 | 1 | 0.07 | 1.9e-04 | 6.66 | -6.7 | 2.7e-11 | -0.97 | 0.06 | 0.09 | FALSE |
118 | NAcc2 | Cers4 | mRNA stability | ENSRNOG00000001072 | 0.09 | 0.02 | enet | 108 | 0.04 | 2.6e-03 | 6.59 | -5.3 | 9.3e-08 | 0.16 | 0.26 | 0.65 | FALSE |
119 | NAcc2 | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.20 | 0.15 | top1 | 1 | 0.15 | 1.5e-08 | 6.44 | -6.4 | 1.2e-10 | -0.81 | 0.14 | 0.85 | FALSE |
120 | OFC | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.43 | 0.14 | top1 | 1 | 0.14 | 2.8e-04 | 6.38 | 6.4 | 1.8e-10 | 0.68 | 0.10 | 0.07 | FALSE |
121 | OFC | Snapc2 | gene expression | ENSRNOG00000001056 | 0.54 | 0.04 | blup | 2272 | 0.12 | 1.0e-03 | 3.79 | 5.5 | 3.0e-08 | 0.63 | 0.50 | 0.05 | FALSE |
122 | OFC | Insr | intron excision ratio | chr12:1257822:1307450 | 0.64 | 0.28 | top1 | 1 | 0.28 | 2.2e-07 | 6.21 | -6.2 | 5.3e-10 | -0.68 | 0.32 | 0.18 | FALSE |
123 | OFC | Zfp958l1 | mRNA stability | ENSRNOG00000000891 | 0.45 | 0.09 | enet | 20 | 0.20 | 2.2e-05 | 0.34 | 6.7 | 2.6e-11 | 0.40 | 0.83 | 0.01 | FALSE |
124 | OFC | Insr | mRNA stability | ENSRNOG00000029986 | 0.82 | 0.37 | top1 | 1 | 0.37 | 1.0e-09 | 6.24 | -6.2 | 4.3e-10 | -0.69 | 0.49 | 0.34 | FALSE |
125 | PL | Brca2 | gene expression | ENSRNOG00000001111 | 0.36 | 0.20 | top1 | 1 | 0.20 | 1.8e-05 | 5.90 | -5.9 | 3.6e-09 | -0.97 | 0.05 | 0.06 | FALSE |
126 | PL | Katnal1 | gene expression | ENSRNOG00000047618 | 0.36 | 0.04 | enet | 7 | 0.22 | 5.0e-06 | 4.67 | -5.7 | 1.4e-08 | -0.08 | 0.26 | 0.66 | FALSE |
127 | PL2 | Evi5l | alternative polyA | ENSRNOT00000114920 | 0.34 | 0.23 | enet | 39 | 0.26 | 1.6e-14 | -1.58 | 6.1 | 1.3e-09 | -0.28 | 1.00 | 0.00 | FALSE |
128 | PL2 | Evi5l | alternative polyA | ENSRNOT00000114920 | 0.38 | 0.25 | enet | 38 | 0.28 | 1.3e-15 | -1.58 | 6.3 | 3.5e-10 | -0.33 | 1.00 | 0.00 | TRUE |
129 | PL2 | Pex11g | alternative polyA | ENSRNOT00000037564 | 0.11 | 0.08 | top1 | 1 | 0.08 | 6.5e-05 | 6.36 | -6.4 | 2.1e-10 | -0.45 | 0.09 | 0.13 | TRUE |
130 | PL2 | Pnpla6 | gene expression | ENSRNOG00000000977 | 0.11 | 0.02 | enet | 5 | 0.09 | 2.3e-05 | 4.67 | 5.6 | 1.9e-08 | 0.78 | 0.59 | 0.05 | FALSE |
131 | PL2 | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.27 | 0.05 | blup | 1821 | 0.12 | 5.2e-07 | 4.99 | 5.4 | 6.0e-08 | 0.64 | 0.62 | 0.37 | FALSE |
132 | PL2 | Stard13 | gene expression | ENSRNOG00000001090 | 0.15 | 0.07 | lasso | 16 | 0.07 | 9.0e-05 | 6.62 | -6.4 | 1.7e-10 | 0.97 | 0.23 | 0.76 | FALSE |
133 | PL2 | Insr | gene expression | ENSRNOG00000029986 | 0.59 | 0.26 | lasso | 12 | 0.31 | 1.9e-17 | 6.57 | -5.8 | 8.3e-09 | -0.93 | 0.17 | 0.83 | FALSE |
134 | PL2 | Camsap3 | isoform ratio | ENSRNOT00000096347 | 0.09 | 0.01 | blup | 1803 | 0.04 | 5.5e-03 | 6.38 | 5.4 | 5.4e-08 | 0.82 | 0.23 | 0.52 | FALSE |
135 | PL2 | Camsap3 | isoform ratio | ENSRNOT00000101379 | 0.11 | 0.03 | enet | 64 | 0.06 | 2.8e-04 | 6.38 | -5.2 | 1.8e-07 | -0.87 | 0.16 | 0.78 | FALSE |
136 | PL2 | Insr | intron excision ratio | chr12:1257822:1307450 | 0.56 | 0.30 | enet | 143 | 0.33 | 1.1e-18 | 6.40 | -5.8 | 8.1e-09 | -0.71 | 0.37 | 0.63 | FALSE |
137 | PL2 | Pet100 | intron excision ratio | chr12:1679962:1680708 | 0.17 | 0.03 | blup | 1824 | 0.05 | 1.5e-03 | 6.38 | 5.9 | 3.0e-09 | 0.90 | 0.13 | 0.84 | FALSE |
138 | PL2 | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.44 | 0.19 | blup | 1824 | 0.25 | 1.5e-13 | 6.36 | 6.5 | 8.1e-11 | 0.85 | 0.22 | 0.78 | FALSE |
139 | PL2 | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.44 | 0.20 | lasso | 9 | 0.24 | 2.5e-13 | 6.36 | -6.7 | 2.0e-11 | 0.01 | 0.21 | 0.79 | TRUE |
140 | PL2 | NA | intron excision ratio | chr12:3870992:3873703 | 0.24 | 0.08 | blup | 1116 | 0.13 | 1.8e-07 | 6.56 | 6.8 | 9.3e-12 | 0.95 | 0.29 | 0.71 | FALSE |
141 | PL2 | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.42 | 0.14 | lasso | 2 | 0.30 | 1.8e-16 | -1.70 | 6.4 | 1.9e-10 | 0.47 | 0.85 | 0.15 | FALSE |
142 | PL2 | Stard13 | mRNA stability | ENSRNOG00000001090 | 0.10 | 0.04 | blup | 1438 | 0.07 | 1.4e-04 | 4.95 | -6.0 | 1.7e-09 | -0.84 | 0.55 | 0.41 | FALSE |
143 | PL2 | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.06 | 0.04 | top1 | 1 | 0.04 | 1.9e-03 | 6.55 | 6.6 | 5.6e-11 | 0.93 | 0.04 | 0.08 | FALSE |
144 | PL2 | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.22 | 0.14 | lasso | 18 | 0.15 | 1.3e-08 | 6.39 | -6.4 | 1.6e-10 | -0.97 | 0.07 | 0.93 | FALSE |
145 | PL2 | Insr | mRNA stability | ENSRNOG00000029986 | 0.71 | 0.43 | lasso | 31 | 0.45 | 7.7e-27 | 6.40 | -6.1 | 1.2e-09 | -0.74 | 0.37 | 0.63 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.