Best TWAS P=1.13e-08 · Best GWAS P=1.01e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Lcmt1 | gene expression | ENSRNOG00000014565 | 0.12 | 1 | 0.07 | 1.9e-08 | -5.43 | 5.77e-08 | 0.58 | FALSE |
Adipose | Lcmt1 | mRNA stability | ENSRNOG00000014565 | 0.09 | 1 | 0.04 | 4.5e-05 | -5.71 | 1.13e-08 | 0.41 | TRUE |
Brain | Tnrc6a | gene expression | ENSRNOG00000024737 | 0.23 | 23 | 0.14 | 8.9e-13 | 5.61 | 1.97e-08 | 0.82 | FALSE |
Brain | Lcmt1 | intron excision ratio | chr1:177952634:177957883 | 0.04 | 1774 | 0.03 | 3.8e-04 | -5.33 | 9.70e-08 | 0.61 | FALSE |
IL | Tnrc6a | gene expression | ENSRNOG00000024737 | 0.19 | 1 | 0.12 | 8.2e-04 | 5.1 | 3.44e-07 | 0.05 | FALSE |
LHb | Chp2 | gene expression | ENSRNOG00000019112 | 0.57 | 1 | 0.24 | 1.7e-06 | 5.12 | 3.02e-07 | 0.29 | FALSE |
Liver | Rbbp6 | gene expression | ENSRNOG00000012806 | 0.05 | 1 | 0.01 | 1.0e-02 | 5.15 | 2.55e-07 | 0.03 | FALSE |
Liver | Lcmt1 | gene expression | ENSRNOG00000014565 | 0.05 | 1774 | -0 | 3.7e-01 | -5.39 | 7.01e-08 | 0.27 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1:177951469:177952543 | 0.27 | 188 | 0.14 | 9.6e-16 | 5.25 | 1.55e-07 | 0.63 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1:177952440:177952543 | 0.26 | 1774 | 0.14 | 1.7e-15 | -5.38 | 7.34e-08 | 0.63 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1:177957980:177959889 | 0.05 | 1 | 0 | 1.8e-01 | 5.11 | 3.17e-07 | 0.03 | FALSE |
Liver | Lcmt1 | mRNA stability | ENSRNOG00000014565 | 0.21 | 141 | 0.15 | 7.4e-16 | 5.47 | 4.52e-08 | 0.64 | FALSE |
NAcc | Lcmt1 | gene expression | ENSRNOG00000014565 | 0.2 | 31 | 0.2 | 4.7e-15 | -5.4 | 6.67e-08 | 0.69 | FALSE |
OFC | Lcmt1 | gene expression | ENSRNOG00000014565 | 0.16 | 1769 | 0.06 | 1.6e-02 | -5.22 | 1.79e-07 | 0.38 | FALSE |
PL | Cacng3 | gene expression | ENSRNOG00000012362 | 0.12 | 1921 | 0.1 | 5.9e-08 | -5.29 | 1.20e-07 | 0.34 | FALSE |
PL | Lcmt1 | gene expression | ENSRNOG00000014565 | 0.06 | 1 | 0.06 | 2.4e-05 | -5.41 | 6.25e-08 | 0.13 | FALSE |
PL | Tnrc6a | gene expression | ENSRNOG00000024737 | 0.1 | 1 | 0.09 | 3.8e-07 | 5.47 | 4.38e-08 | 0.7 | FALSE |