chr1:176,132,720-178,728,015

Trait: Tibialis anterior weight

Best TWAS P=1.07e-08 · Best GWAS P=1.01e-08 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Lcmt1 gene expression Lcmt1 0.12 1 0.07 2.2e-08 5.43 5.77e-08 0.58 FALSE
Adipose Lcmt1 mRNA stability Lcmt1 0.08 1 0.04 7.5e-05 5.71 1.12e-08 0.35 FALSE
BLA Tnrc6a gene expression Tnrc6a 0.07 12 0.03 1.1e-02 -5.72 1.07e-08 0.48 TRUE
Brain Tnrc6a gene expression Tnrc6a 0.18 22 0.12 1.5e-11 5.54 3.10e-08 0.81 FALSE
Brain Zkscan2 gene expression Zkscan2 0.09 1 0.08 9.9e-08 5.67 1.43e-08 0.82 FALSE
Brain Lcmt1 intron excision ratio chr1_177952634_177957883 0.05 1 0.02 3.5e-03 5.67 1.43e-08 0.12 FALSE
IL Tnrc6a gene expression Tnrc6a 0.19 1 0.13 5.8e-04 -5.49 3.92e-08 0.06 FALSE
IL Lcmt1 intron excision ratio chr1_177957980_177959889 0.3 1 0.14 3.3e-04 -5.71 1.12e-08 0.11 FALSE
Liver Lcmt1 gene expression Lcmt1 0.05 1781 -0 3.7e-01 -5.36 8.46e-08 0.28 FALSE
Liver Prkcb gene expression Prkcb 0.03 1825 0.01 1.1e-02 -5.19 2.08e-07 0.56 FALSE
Liver Lcmt1 intron excision ratio chr1_177951469_177952543 0.27 1781 0.14 6.1e-15 5.41 6.40e-08 0.63 FALSE
Liver Lcmt1 intron excision ratio chr1_177952440_177952543 0.27 1781 0.14 5.7e-15 -5.4 6.63e-08 0.64 FALSE
Liver Lcmt1 intron excision ratio chr1_177957980_177959889 0.05 1781 0.01 1.9e-02 5.67 1.44e-08 0.33 FALSE
Liver Lcmt1 mRNA stability Lcmt1 0.17 138 0.1 1.3e-11 -5.49 4.09e-08 0.63 FALSE
NAcc Lcmt1 gene expression Lcmt1 0.17 32 0.19 1.3e-21 -5.28 1.30e-07 0.71 FALSE
NAcc Tnrc6a gene expression Tnrc6a 0.02 12 0.02 2.3e-03 -5.46 4.75e-08 0.59 FALSE
OFC Arhgap17 gene expression Arhgap17 0.26 1 0.13 6.6e-04 5.25 1.54e-07 0.05 FALSE
PL Lcmt1 gene expression Lcmt1 0.04 1 0.04 4.6e-05 5.38 7.32e-08 0.18 FALSE
PL Tnrc6a gene expression Tnrc6a 0.08 1730 0.09 3.4e-10 5.64 1.73e-08 0.66 FALSE
PL Zkscan2 gene expression Zkscan2 0.04 1 0.04 8.2e-05 5.65 1.62e-08 0.23 FALSE
PL Lcmt1 intron excision ratio chr1_177957980_177959889 0.05 1782 0.03 1.5e-04 5.55 2.93e-08 0.66 FALSE