Best TWAS P=1.07e-08 · Best GWAS P=1.01e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Lcmt1 | gene expression | Lcmt1 | 0.12 | 1 | 0.07 | 2.2e-08 | 5.43 | 5.77e-08 | 0.58 | FALSE |
Adipose | Lcmt1 | mRNA stability | Lcmt1 | 0.08 | 1 | 0.04 | 7.5e-05 | 5.71 | 1.12e-08 | 0.35 | FALSE |
BLA | Tnrc6a | gene expression | Tnrc6a | 0.07 | 12 | 0.03 | 1.1e-02 | -5.72 | 1.07e-08 | 0.48 | TRUE |
Brain | Tnrc6a | gene expression | Tnrc6a | 0.18 | 22 | 0.12 | 1.5e-11 | 5.54 | 3.10e-08 | 0.81 | FALSE |
Brain | Zkscan2 | gene expression | Zkscan2 | 0.09 | 1 | 0.08 | 9.9e-08 | 5.67 | 1.43e-08 | 0.82 | FALSE |
Brain | Lcmt1 | intron excision ratio | chr1_177952634_177957883 | 0.05 | 1 | 0.02 | 3.5e-03 | 5.67 | 1.43e-08 | 0.12 | FALSE |
IL | Tnrc6a | gene expression | Tnrc6a | 0.19 | 1 | 0.13 | 5.8e-04 | -5.49 | 3.92e-08 | 0.06 | FALSE |
IL | Lcmt1 | intron excision ratio | chr1_177957980_177959889 | 0.3 | 1 | 0.14 | 3.3e-04 | -5.71 | 1.12e-08 | 0.11 | FALSE |
Liver | Lcmt1 | gene expression | Lcmt1 | 0.05 | 1781 | -0 | 3.7e-01 | -5.36 | 8.46e-08 | 0.28 | FALSE |
Liver | Prkcb | gene expression | Prkcb | 0.03 | 1825 | 0.01 | 1.1e-02 | -5.19 | 2.08e-07 | 0.56 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1_177951469_177952543 | 0.27 | 1781 | 0.14 | 6.1e-15 | 5.41 | 6.40e-08 | 0.63 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1_177952440_177952543 | 0.27 | 1781 | 0.14 | 5.7e-15 | -5.4 | 6.63e-08 | 0.64 | FALSE |
Liver | Lcmt1 | intron excision ratio | chr1_177957980_177959889 | 0.05 | 1781 | 0.01 | 1.9e-02 | 5.67 | 1.44e-08 | 0.33 | FALSE |
Liver | Lcmt1 | mRNA stability | Lcmt1 | 0.17 | 138 | 0.1 | 1.3e-11 | -5.49 | 4.09e-08 | 0.63 | FALSE |
NAcc | Lcmt1 | gene expression | Lcmt1 | 0.17 | 32 | 0.19 | 1.3e-21 | -5.28 | 1.30e-07 | 0.71 | FALSE |
NAcc | Tnrc6a | gene expression | Tnrc6a | 0.02 | 12 | 0.02 | 2.3e-03 | -5.46 | 4.75e-08 | 0.59 | FALSE |
OFC | Arhgap17 | gene expression | Arhgap17 | 0.26 | 1 | 0.13 | 6.6e-04 | 5.25 | 1.54e-07 | 0.05 | FALSE |
PL | Lcmt1 | gene expression | Lcmt1 | 0.04 | 1 | 0.04 | 4.6e-05 | 5.38 | 7.32e-08 | 0.18 | FALSE |
PL | Tnrc6a | gene expression | Tnrc6a | 0.08 | 1730 | 0.09 | 3.4e-10 | 5.64 | 1.73e-08 | 0.66 | FALSE |
PL | Zkscan2 | gene expression | Zkscan2 | 0.04 | 1 | 0.04 | 8.2e-05 | 5.65 | 1.62e-08 | 0.23 | FALSE |
PL | Lcmt1 | intron excision ratio | chr1_177957980_177959889 | 0.05 | 1782 | 0.03 | 1.5e-04 | 5.55 | 2.93e-08 | 0.66 | FALSE |