Best TWAS P=1.92e-08 · Best GWAS P=3.51e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Cyb5d2 | alternative TSS | ENSRNOT00000036942 | 0.04 | 1 | 0.02 | 2.3e-03 | -5.5 | 3.74e-08 | 0.06 | FALSE |
Adipose | Cyb5d2 | alternative TSS | ENSRNOT00000097276 | 0.04 | 1 | 0.02 | 2.8e-03 | 5.5 | 3.74e-08 | 0.06 | FALSE |
Adipose | Fbxo39 | gene expression | ENSRNOG00000014953 | 0.1 | 1 | 0.07 | 2.4e-08 | -5.16 | 2.52e-07 | 0.48 | FALSE |
Adipose | Tekt1 | gene expression | ENSRNOG00000014973 | 0.04 | 1415 | 0.03 | 3.5e-04 | 5.47 | 4.51e-08 | 0.6 | FALSE |
Adipose | Spns3 | gene expression | ENSRNOG00000015873 | 0.04 | 1252 | 0.03 | 7.4e-04 | 5.5 | 3.76e-08 | 0.57 | FALSE |
Adipose | Tax1bp3 | gene expression | ENSRNOG00000019357 | 0.19 | 1 | 0.13 | 6.3e-14 | 5.51 | 3.65e-08 | 0.89 | FALSE |
Adipose | Cyb5d2 | gene expression | ENSRNOG00000024553 | 0.03 | 1 | 0.02 | 1.8e-03 | -5.24 | 1.64e-07 | 0.03 | FALSE |
Adipose | Xaf1 | gene expression | ENSRNOG00000037371 | 0.06 | 1555 | 0.04 | 5.7e-05 | -5.47 | 4.51e-08 | 0.65 | FALSE |
Adipose | Atp2a3 | isoform ratio | ENSRNOT00000064840 | 0.03 | 1 | 0.02 | 1.6e-03 | 5.51 | 3.51e-08 | 0.05 | FALSE |
Adipose | Xaf1 | isoform ratio | ENSRNOT00000118013 | 0.03 | 1 | 0.01 | 1.8e-02 | -5.14 | 2.76e-07 | 0.03 | FALSE |
Adipose | Ankfy1 | mRNA stability | ENSRNOG00000016212 | 0.12 | 1 | 0.09 | 7.9e-10 | -5.3 | 1.17e-07 | 0.63 | FALSE |
Adipose | P2rx5 | mRNA stability | ENSRNOG00000019208 | 0.08 | 2 | 0.05 | 5.8e-06 | 5.62 | 1.92e-08 | 0.8 | FALSE |
Adipose | Cyb5d2 | mRNA stability | ENSRNOG00000024553 | 0.09 | 1030 | 0.05 | 2.0e-06 | 5.45 | 5.16e-08 | 0.68 | FALSE |
Adipose | ENSRNOG00000067475 | mRNA stability | ENSRNOG00000067475 | 0.05 | 1702 | 0.04 | 4.6e-05 | 5.29 | 1.24e-07 | 0.57 | FALSE |
BLA | Xaf1 | alternative polyA | ENSRNOT00000056551 | 0.12 | 1 | 0.09 | 1.6e-05 | 5.38 | 7.44e-08 | 0.26 | FALSE |
BLA | Xaf1 | alternative polyA | ENSRNOT00000118013 | 0.12 | 1 | 0.09 | 1.1e-05 | -5.38 | 7.44e-08 | 0.3 | FALSE |
BLA | Fbxo39 | gene expression | ENSRNOG00000014953 | 0.07 | 1 | 0.04 | 2.2e-03 | -5.13 | 2.86e-07 | 0.04 | FALSE |
BLA | Tekt1 | gene expression | ENSRNOG00000014973 | 0.07 | 1415 | 0.03 | 1.1e-02 | 5.34 | 9.10e-08 | 0.36 | FALSE |
BLA | Smtnl2 | gene expression | ENSRNOG00000015157 | 0.07 | 1373 | 0.02 | 4.0e-02 | 5.4 | 6.53e-08 | 0.33 | FALSE |
BLA | Atp2a3 | gene expression | ENSRNOG00000017912 | 0.14 | 1 | 0.08 | 6.3e-05 | 5.5 | 3.74e-08 | 0.18 | FALSE |
BLA | Camkk1 | gene expression | ENSRNOG00000018242 | 0.14 | 4 | 0.03 | 8.3e-03 | -5.4 | 6.68e-08 | 0.42 | FALSE |
BLA | Zzef1 | gene expression | ENSRNOG00000024535 | 0.16 | 1 | 0.11 | 1.1e-06 | 5.24 | 1.64e-07 | 0.31 | FALSE |
BLA | Xaf1 | isoform ratio | ENSRNOT00000056551 | 0.1 | 1 | 0.06 | 4.6e-04 | 5.38 | 7.44e-08 | 0.08 | FALSE |
BLA | Xaf1 | isoform ratio | ENSRNOT00000118013 | 0.13 | 1 | 0.09 | 1.4e-05 | -5.38 | 7.44e-08 | 0.34 | FALSE |
BLA | Cyb5d2 | intron excision ratio | chr10:57407529:57412543 | 0.08 | 1 | 0.05 | 9.5e-04 | -5.38 | 7.44e-08 | 0.05 | FALSE |
Brain | Xaf1 | alternative polyA | ENSRNOT00000056551 | 0.06 | 1 | 0.05 | 3.0e-05 | 5.3 | 1.18e-07 | 0.37 | FALSE |
Brain | Xaf1 | alternative polyA | ENSRNOT00000118013 | 0.06 | 1 | 0.05 | 4.4e-05 | -5.3 | 1.18e-07 | 0.32 | FALSE |
Brain | RGD1304728 | gene expression | ENSRNOG00000014027 | 0.23 | 20 | 0.24 | 1.8e-22 | -5.37 | 7.66e-08 | 0.66 | FALSE |
Brain | Spns3 | gene expression | ENSRNOG00000015873 | 0.04 | 1 | 0.04 | 1.5e-04 | 5.28 | 1.30e-07 | 0.07 | FALSE |
Brain | Ankfy1 | gene expression | ENSRNOG00000016212 | 0.09 | 1 | 0.09 | 5.6e-09 | -5.43 | 5.57e-08 | 0.77 | FALSE |
Brain | Xaf1 | isoform ratio | ENSRNOT00000056551 | 0.07 | 1 | 0.04 | 8.9e-05 | 5.3 | 1.18e-07 | 0.17 | FALSE |
Brain | Xaf1 | isoform ratio | ENSRNOT00000118013 | 0.08 | 1 | 0.06 | 7.1e-06 | -5.3 | 1.18e-07 | 0.53 | FALSE |
Brain | Cyb5d2 | intron excision ratio | chr10:57400881:57407389 | 0.03 | 7 | 0.04 | 2.1e-04 | -5.37 | 8.04e-08 | 0.7 | FALSE |
Brain | Pitpnm3 | mRNA stability | ENSRNOG00000008323 | 0.03 | 1 | 0.01 | 5.4e-02 | 5.3 | 1.18e-07 | 0.04 | FALSE |
Brain | Spns2 | mRNA stability | ENSRNOG00000057040 | 0.03 | 1 | 0.02 | 2.7e-03 | 5.22 | 1.83e-07 | 0.04 | FALSE |
Brain | ENSRNOG00000067475 | mRNA stability | ENSRNOG00000067475 | 0.03 | 1703 | 0.02 | 2.4e-03 | 5.53 | 3.13e-08 | 0.58 | FALSE |
Eye | Ankfy1 | gene expression | ENSRNOG00000016212 | 0.29 | 1 | 0.07 | 3.3e-02 | -5.3 | 1.18e-07 | 0.06 | FALSE |
IL | Tekt1 | gene expression | ENSRNOG00000014973 | 0.22 | 1407 | 0.06 | 1.5e-02 | 5.5 | 3.91e-08 | 0.29 | FALSE |
IL | Camkk1 | gene expression | ENSRNOG00000018242 | 0.25 | 1 | 0.06 | 1.3e-02 | -5.32 | 1.03e-07 | 0.06 | FALSE |
Liver | RGD1304728 | alternative polyA | ENSRNOT00000110799 | 0.21 | 1 | 0.13 | 2.8e-14 | 5.3 | 1.17e-07 | 0.66 | FALSE |
Liver | RGD1304728 | alternative polyA | ENSRNOT00000115682 | 0.04 | 1 | 0.02 | 3.4e-03 | -5.22 | 1.83e-07 | 0.04 | FALSE |
Liver | Slc13a5 | gene expression | ENSRNOG00000014870 | 0.37 | 1 | 0.22 | 1.6e-23 | -5.3 | 1.17e-07 | 0.66 | FALSE |
Liver | Cyb5d2 | gene expression | ENSRNOG00000024553 | 0.2 | 1030 | 0.14 | 3.9e-15 | -5.62 | 1.92e-08 | 0.75 | TRUE |
Liver | Spns2 | gene expression | ENSRNOG00000057040 | 0.02 | 1 | 0.01 | 1.1e-02 | -5.36 | 8.34e-08 | 0.03 | FALSE |
Liver | Ube2g1 | intron excision ratio | chr10:57226312:57282204 | 0.03 | 1 | 0.02 | 2.1e-03 | 5.3 | 1.18e-07 | 0.03 | FALSE |
Liver | RGD1304728 | intron excision ratio | chr10:56785576:56788896 | 0.09 | 195 | 0.03 | 1.7e-04 | 5.58 | 2.34e-08 | 0.64 | FALSE |
NAcc | RGD1304728 | gene expression | ENSRNOG00000014027 | 0.05 | 1 | 0.04 | 3.9e-04 | -5.24 | 1.64e-07 | 0.04 | FALSE |
NAcc | Tax1bp3 | gene expression | ENSRNOG00000019357 | 0.08 | 1139 | 0.02 | 1.5e-02 | 5.23 | 1.70e-07 | 0.59 | FALSE |
PL | RGD1304728 | gene expression | ENSRNOG00000014027 | 0.15 | 69 | 0.11 | 1.9e-08 | -5.41 | 6.33e-08 | 0.65 | FALSE |
PL | Tekt1 | gene expression | ENSRNOG00000014973 | 0.06 | 1 | 0.05 | 1.6e-04 | 5.32 | 1.02e-07 | 0.07 | FALSE |
PL | Camkk1 | gene expression | ENSRNOG00000018242 | 0.37 | 3 | 0.24 | 4.7e-18 | -5.39 | 7.05e-08 | 0.81 | FALSE |
PL | Camkk1 | intron excision ratio | chr10:57644145:57644236 | 0.11 | 1 | 0.11 | 8.5e-09 | 5.31 | 1.11e-07 | 0.69 | FALSE |
PL | ENSRNOG00000067475 | mRNA stability | ENSRNOG00000067475 | 0.06 | 1 | 0.03 | 1.3e-03 | 5.24 | 1.64e-07 | 0.05 | FALSE |