chr1:258,394,596-260,518,987

Trait: BMI without tail

Best TWAS P=7.87e-16 · Best GWAS P=1.45e-15 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Dennd10 gene expression ENSRNOG00000010230 0.03 1 0.03 2.5e-04 -6.67 2.54e-11 0.02 FALSE
Adipose Prdx3 gene expression ENSRNOG00000010958 0.19 34 0.22 1.6e-23 -5.56 2.77e-08 0 FALSE
Adipose Grk5 gene expression ENSRNOG00000011439 0.17 24 0.22 8.6e-24 7.02 2.21e-12 0.02 FALSE
BLA Rab11fip2 gene expression ENSRNOG00000009523 0.11 1 0.05 1.1e-03 -5.66 1.47e-08 0.04 TRUE
BLA Ces2c gene expression ENSRNOG00000036571 0.26 16 0.2 1.1e-10 6.86 6.79e-12 0.72 FALSE
BLA Sfxn4 gene expression ENSRNOG00000036572 0.07 1 0.02 2.1e-02 8.06 7.87e-16 0.35 TRUE
BLA Cacul1 isoform ratio ENSRNOT00000084760 0.07 1 0 2.4e-01 -7.23 4.94e-13 0.04 FALSE
Brain Rab11fip2 gene expression ENSRNOG00000009523 0.09 2 0.06 3.6e-06 -5.78 7.55e-09 0.04 FALSE
Brain Prlhr gene expression ENSRNOG00000009922 0.03 1906 0.01 1.4e-02 5.43 5.60e-08 0.29 FALSE
Brain Nanos1 gene expression ENSRNOG00000025060 0.03 58 0.01 2.2e-02 -7.41 1.23e-13 0.48 FALSE
Brain Ces2c gene expression ENSRNOG00000036571 0.2 597 0.29 3.4e-27 6.7 2.03e-11 0.72 FALSE
Brain Sfxn4 gene expression ENSRNOG00000036572 0.09 36 0.09 2.2e-08 5.54 3.06e-08 0.01 FALSE
Brain Cacul1 isoform ratio ENSRNOT00000050617 0.14 1 0.11 3.3e-10 7.67 1.66e-14 0.77 FALSE
Brain Cacul1 isoform ratio ENSRNOT00000084760 0.12 5 0.11 5.6e-10 -6.87 6.29e-12 0.84 TRUE
Brain Zfp950 isoform ratio ENSRNOT00000047883 0.04 954 0.05 9.3e-06 6.19 6.14e-10 0.05 FALSE
Brain Cacul1 intron excision ratio chr1:259677583:259686255 0.12 36 0.1 1.6e-09 7.28 3.22e-13 0.86 TRUE
Eye ENSRNOG00000065260 gene expression ENSRNOG00000065260 0.45 1 0.18 9.5e-04 -7.62 2.49e-14 0.06 FALSE
IL Ces2c gene expression ENSRNOG00000036571 0.35 1 0.35 2.3e-09 6.88 6.03e-12 0.7 FALSE
IL Sfxn4 gene expression ENSRNOG00000036572 0.19 1 0.13 5.3e-04 6.88 5.98e-12 0.05 FALSE
LHb Ces2c gene expression ENSRNOG00000036571 0.25 594 0.19 2.3e-05 6.33 2.37e-10 0.65 FALSE
Liver Rab11fip2 gene expression ENSRNOG00000009523 0.03 2371 0.01 1.3e-02 -5.18 2.22e-07 0.24 TRUE
Liver Nanos1 gene expression ENSRNOG00000025060 0.03 1 0.02 1.2e-03 -5.4 6.73e-08 0.03 FALSE
Liver Zfp950 gene expression ENSRNOG00000032668 0.03 1 0.01 7.7e-03 -7.55 4.28e-14 0.04 FALSE
Liver Cacul1 isoform ratio ENSRNOT00000050617 0.03 1 0.02 1.3e-03 7.19 6.34e-13 0.03 FALSE
Liver Cacul1 isoform ratio ENSRNOT00000084760 0.03 1780 0.02 4.5e-03 -6.82 9.36e-12 0.42 FALSE
Liver Cacul1 mRNA stability ENSRNOG00000009954 0.03 1 0.01 1.4e-02 7.47 8.19e-14 0.03 FALSE
NAcc Prlhr gene expression ENSRNOG00000009922 0.14 1904 0.11 2.3e-08 6.93 4.21e-12 0.78 FALSE
NAcc Zfp950 gene expression ENSRNOG00000032668 0.05 15 0.02 7.3e-03 6.18 6.40e-10 0.36 FALSE
NAcc Ces2c gene expression ENSRNOG00000036571 0.22 597 0.22 5.3e-16 6.25 4.22e-10 0.71 FALSE
NAcc Sfxn4 gene expression ENSRNOG00000036572 0.07 1 0.04 3.8e-04 7.54 4.62e-14 0.05 FALSE
NAcc Cacul1 isoform ratio ENSRNOT00000050617 0.05 1781 0.05 9.6e-05 7.76 8.31e-15 0.8 FALSE
NAcc Cacul1 isoform ratio ENSRNOT00000084760 0.05 1781 0.05 1.6e-04 -7.78 7.29e-15 0.79 FALSE
OFC Rab11fip2 gene expression ENSRNOG00000009523 0.3 17 0.27 5.1e-07 -7.15 8.75e-13 0.55 TRUE
OFC Cacul1 gene expression ENSRNOG00000009954 0.45 1782 0.41 9.5e-11 5.7 1.21e-08 0.5 FALSE
OFC Ces2c gene expression ENSRNOG00000036571 0.38 1 0.42 3.6e-11 6.83 8.34e-12 0.76 FALSE
OFC Sfxn4 gene expression ENSRNOG00000036572 0.41 17 0.26 7.0e-07 7.15 8.62e-13 0.09 FALSE
OFC Rab11fip2 mRNA stability ENSRNOG00000009523 0.16 1 0.19 2.9e-05 -7.07 1.58e-12 0.05 FALSE
PL Rab11fip2 gene expression ENSRNOG00000009523 0.06 76 0.05 1.5e-04 -7.34 2.11e-13 0.63 FALSE
PL Cacul1 gene expression ENSRNOG00000009954 0.24 45 0.18 2.4e-13 5.27 1.39e-07 0 FALSE
PL Ces2c gene expression ENSRNOG00000036571 0.39 1 0.38 3.4e-30 6.64 3.17e-11 0.48 FALSE
PL Sfxn4 gene expression ENSRNOG00000036572 0.17 158 0.1 9.5e-08 6.22 4.94e-10 0.11 FALSE
PL Cacul1 isoform ratio ENSRNOT00000050617 0.03 1 0.02 1.8e-02 8.01 1.13e-15 0.23 FALSE
PL Zfp950 intron excision ratio chr1:260237329:260247276 0.03 954 0.02 1.2e-02 7.2 5.92e-13 0.5 FALSE