Best TWAS P=3.81e-12 · Best GWAS P=1.30e-12 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Kif16b | alternative polyA | ENSRNOT00000118037 | 0.08 | 1 | 0.05 | 5.3e-06 | 5.16 | 2.45e-07 | 0.02 | FALSE |
Adipose | Dstn | gene expression | ENSRNOG00000005924 | 0.59 | 1575 | 0.48 | 3.4e-60 | 5.57 | 2.50e-08 | 0.11 | TRUE |
Adipose | Dtd1 | gene expression | ENSRNOG00000008746 | 0.28 | 19 | 0.15 | 5.0e-16 | 5.25 | 1.55e-07 | 0.53 | FALSE |
Adipose | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.04 | 20 | 0.01 | 1.5e-02 | -6.33 | 2.40e-10 | 0.42 | FALSE |
Adipose | Dstn | mRNA stability | ENSRNOG00000005924 | 0.83 | 184 | 0.6 | 1.1e-83 | 5.15 | 2.57e-07 | 0.1 | FALSE |
BLA | Kif16b | gene expression | ENSRNOG00000004951 | 0.04 | 1 | 0.04 | 4.1e-03 | 6.69 | 2.22e-11 | 0.04 | FALSE |
BLA | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.05 | 1 | 0.02 | 4.4e-02 | 6.94 | 3.81e-12 | 0.05 | TRUE |
BLA | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.11 | 1 | 0.07 | 1.9e-04 | 6.36 | 2.03e-10 | 0.05 | FALSE |
BLA | Dstn | gene expression | ENSRNOG00000005924 | 0.84 | 268 | 0.64 | 9.8e-44 | 5.76 | 8.18e-09 | 0.29 | FALSE |
BLA | Otor | gene expression | ENSRNOG00000028721 | 0.07 | 1960 | 0.04 | 2.7e-03 | -6.23 | 4.73e-10 | 0.26 | TRUE |
BLA | ENSRNOG00000067833 | gene expression | ENSRNOG00000067833 | 0.09 | 1 | 0.02 | 3.9e-02 | 5.29 | 1.19e-07 | 0.06 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.14 | 1 | 0.07 | 8.2e-05 | 5.55 | 2.82e-08 | 0.42 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.13 | 1 | 0.07 | 7.7e-05 | -5.55 | 2.82e-08 | 0.34 | FALSE |
BLA | Rbbp9 | intron excision ratio | chr3:131929690:131931999 | 0.17 | 1 | 0.14 | 6.7e-08 | -5.36 | 8.44e-08 | 0.63 | FALSE |
BLA | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.23 | 1 | 0.15 | 3.1e-08 | -5.98 | 2.23e-09 | 0.02 | FALSE |
BLA | Dstn | mRNA stability | ENSRNOG00000005924 | 0.45 | 182 | 0.39 | 2.2e-22 | 6.18 | 6.28e-10 | 0.61 | FALSE |
BLA | Kat14 | mRNA stability | ENSRNOG00000007160 | 0.05 | 4 | 0.03 | 9.8e-03 | -5.16 | 2.41e-07 | 0.23 | FALSE |
Brain | Rrbp1 | alternative TSS | ENSRNOT00000055602 | 0.03 | 1597 | 0.03 | 2.1e-03 | -5.12 | 3.08e-07 | 0.4 | FALSE |
Brain | Rrbp1 | alternative TSS | ENSRNOT00000101060 | 0.03 | 1597 | 0.02 | 2.7e-03 | 5.2 | 1.97e-07 | 0.39 | FALSE |
Brain | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.06 | 1963 | 0.05 | 1.0e-05 | 5.65 | 1.57e-08 | 0.48 | FALSE |
Brain | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.38 | 1 | 0.44 | 3.9e-44 | 6.05 | 1.42e-09 | 0.03 | FALSE |
Brain | Dstn | gene expression | ENSRNOG00000005924 | 0.72 | 189 | 0.8 | 3.2e-120 | 5.63 | 1.81e-08 | 0.1 | FALSE |
Brain | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.14 | 1597 | 0.16 | 4.1e-15 | -5.8 | 6.80e-09 | 0.35 | FALSE |
Brain | Sec23b | gene expression | ENSRNOG00000008411 | 0.78 | 128 | 0.8 | 7.8e-119 | 5.13 | 2.96e-07 | 0.12 | FALSE |
Brain | Otor | gene expression | ENSRNOG00000028721 | 0.1 | 25 | 0.11 | 5.1e-10 | -5.98 | 2.22e-09 | 0.44 | FALSE |
Brain | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.03 | 1 | 0.03 | 5.7e-04 | 6.44 | 1.23e-10 | 0.03 | FALSE |
Brain | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.3 | 118 | 0.22 | 3.0e-20 | 5.1 | 3.33e-07 | 0.22 | FALSE |
Brain | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.03 | 1963 | 0.01 | 1.3e-02 | 5.58 | 2.36e-08 | 0.36 | FALSE |
Brain | Dstn | mRNA stability | ENSRNOG00000005924 | 0.71 | 239 | 0.52 | 1.2e-56 | 5.8 | 6.66e-09 | 0.1 | FALSE |
Eye | Dstn | gene expression | ENSRNOG00000005924 | 0.77 | 1048 | 0.25 | 1.1e-04 | 5.67 | 1.39e-08 | 0.38 | FALSE |
Eye | Sec23b | gene expression | ENSRNOG00000008411 | 0.81 | 19 | 0.29 | 2.1e-05 | 5.41 | 6.47e-08 | 0.59 | FALSE |
Eye | Zfp133 | intron excision ratio | chr3:131829590:131840865 | 0.3 | 1 | 0.04 | 9.9e-02 | -5.61 | 2.03e-08 | 0.06 | FALSE |
IL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.49 | 1 | 0.21 | 7.5e-06 | 6.79 | 1.14e-11 | 0.17 | FALSE |
IL | Dstn | gene expression | ENSRNOG00000005924 | 0.79 | 1574 | 0.39 | 2.0e-10 | 5.91 | 3.44e-09 | 0.52 | FALSE |
IL | Dzank1 | intron excision ratio | chr3:131906549:131908083 | 0.18 | 1 | 0.1 | 2.0e-03 | 5.25 | 1.56e-07 | 0.05 | FALSE |
IL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.54 | 1574 | 0.34 | 4.2e-09 | 5.22 | 1.79e-07 | 0.5 | FALSE |
LHb | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.24 | 1 | 0.15 | 2.3e-04 | 6.71 | 1.97e-11 | 0.05 | FALSE |
LHb | Dstn | gene expression | ENSRNOG00000005924 | 0.8 | 8 | 0.5 | 1.3e-13 | 5.87 | 4.30e-09 | 0.41 | FALSE |
LHb | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.22 | 1 | 0.21 | 1.0e-05 | -6.12 | 9.40e-10 | 0.08 | FALSE |
LHb | Otor | gene expression | ENSRNOG00000028721 | 0.26 | 5 | 0.01 | 1.7e-01 | -6.56 | 5.34e-11 | 0.28 | FALSE |
LHb | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.11 | 6 | 0.03 | 7.3e-02 | -6.43 | 1.24e-10 | 0.34 | FALSE |
LHb | Dstn | mRNA stability | ENSRNOG00000005924 | 0.39 | 1 | 0.37 | 8.7e-10 | 5.6 | 2.09e-08 | 0.07 | FALSE |
Liver | Kif16b | alternative polyA | ENSRNOT00000036273 | 0.18 | 1 | 0.14 | 6.7e-15 | -6.75 | 1.46e-11 | 0.44 | FALSE |
Liver | Kif16b | alternative polyA | ENSRNOT00000118037 | 0.18 | 1 | 0.14 | 1.3e-15 | 6.72 | 1.88e-11 | 0.38 | FALSE |
Liver | Kif16b | gene expression | ENSRNOG00000004951 | 0.21 | 12 | 0.18 | 3.7e-19 | -6.73 | 1.68e-11 | 0.6 | FALSE |
Liver | Dstn | gene expression | ENSRNOG00000005924 | 0.67 | 1575 | 0.53 | 2.6e-69 | 5.58 | 2.36e-08 | 0.25 | FALSE |
Liver | Kif16b | isoform ratio | ENSRNOT00000083061 | 0.06 | 1 | 0.04 | 4.7e-05 | -6.69 | 2.23e-11 | 0.17 | FALSE |
Liver | Kif16b | isoform ratio | ENSRNOT00000118037 | 0.15 | 2140 | 0.13 | 4.0e-14 | 6.73 | 1.67e-11 | 0.48 | FALSE |
Liver | Mgme1 | isoform ratio | ENSRNOT00000038865 | 0.03 | 1 | 0.02 | 4.0e-03 | -5.6 | 2.20e-08 | 0.03 | FALSE |
Liver | Mgme1 | isoform ratio | ENSRNOT00000098696 | 0.03 | 1 | 0.02 | 3.2e-03 | 5.6 | 2.20e-08 | 0.04 | FALSE |
Liver | Kif16b | intron excision ratio | chr3:129976371:129996958 | 0.03 | 2140 | 0.01 | 2.4e-02 | -5.84 | 5.25e-09 | 0.09 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.04 | 1 | 0.03 | 3.5e-04 | 6.09 | 1.10e-09 | 0.03 | FALSE |
Liver | Snrpb2 | intron excision ratio | chr3:130399832:130400989 | 0.06 | 1963 | 0.03 | 2.4e-04 | -6.55 | 5.79e-11 | 0.42 | FALSE |
Liver | Dstn | mRNA stability | ENSRNOG00000005924 | 0.67 | 1575 | 0.5 | 1.1e-63 | 5.56 | 2.63e-08 | 0.16 | FALSE |
Liver | Rbbp9 | mRNA stability | ENSRNOG00000007972 | 0.04 | 1818 | 0.01 | 8.2e-03 | 5.14 | 2.73e-07 | 0.58 | FALSE |
NAcc | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.04 | 1 | 0.02 | 1.4e-02 | 6.03 | 1.60e-09 | 0.03 | FALSE |
NAcc | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.25 | 6 | 0.15 | 3.4e-11 | 5.96 | 2.55e-09 | 0.36 | FALSE |
NAcc | Dstn | gene expression | ENSRNOG00000005924 | 0.84 | 1 | 0.7 | 1.4e-71 | 5.78 | 7.48e-09 | 0.22 | FALSE |
NAcc | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.11 | 1 | 0.11 | 2.0e-08 | -5.55 | 2.81e-08 | 0.09 | FALSE |
NAcc | Otor | gene expression | ENSRNOG00000028721 | 0.04 | 1 | 0.01 | 5.2e-02 | -6.53 | 6.63e-11 | 0.04 | FALSE |
NAcc | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.17 | 1 | 0.08 | 7.7e-07 | 5.11 | 3.19e-07 | 0.29 | FALSE |
NAcc | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.04 | 27 | 0.01 | 5.8e-02 | -6.07 | 1.31e-09 | 0.46 | TRUE |
NAcc | Dstn | mRNA stability | ENSRNOG00000005924 | 0.55 | 212 | 0.48 | 1.3e-39 | 6 | 2.00e-09 | 0.18 | FALSE |
OFC | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.62 | 9 | 0.38 | 5.0e-10 | 5.44 | 5.27e-08 | 0.57 | TRUE |
OFC | Dstn | gene expression | ENSRNOG00000005924 | 0.82 | 41 | 0.52 | 1.4e-14 | 5.8 | 6.72e-09 | 0.43 | FALSE |
OFC | Dstn | mRNA stability | ENSRNOG00000005924 | 0.29 | 1574 | 0.19 | 3.1e-05 | 5.69 | 1.27e-08 | 0.48 | FALSE |
OFC | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.59 | 1 | 0.42 | 3.9e-11 | 5.39 | 6.87e-08 | 0.66 | FALSE |
PL | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.12 | 9 | 0.11 | 1.3e-08 | 6.37 | 1.85e-10 | 0.39 | FALSE |
PL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.15 | 80 | 0.18 | 1.0e-13 | 6.41 | 1.49e-10 | 0.19 | FALSE |
PL | Dstn | gene expression | ENSRNOG00000005924 | 0.88 | 165 | 0.62 | 4.1e-59 | 5.69 | 1.25e-08 | 0.12 | FALSE |
PL | Zfp133 | gene expression | ENSRNOG00000027955 | 0.19 | 1 | 0.12 | 1.3e-09 | -5.14 | 2.73e-07 | 0.3 | FALSE |
PL | Otor | gene expression | ENSRNOG00000028721 | 0.06 | 1972 | 0.05 | 1.0e-04 | -6.38 | 1.74e-10 | 0.48 | FALSE |
PL | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.05 | 1963 | 0.03 | 2.9e-03 | 6.78 | 1.19e-11 | 0.45 | FALSE |
PL | Dzank1 | intron excision ratio | chr3:131906549:131907051 | 0.09 | 1 | 0.1 | 2.3e-08 | -5.41 | 6.17e-08 | 0.68 | FALSE |
PL | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.11 | 1 | 0.07 | 5.8e-06 | -5.22 | 1.79e-07 | 0.02 | FALSE |
PL | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.04 | 1 | 0.02 | 5.4e-03 | -6.13 | 8.72e-10 | 0.03 | FALSE |
PL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.7 | 52 | 0.49 | 6.1e-42 | 5.66 | 1.53e-08 | 0.1 | FALSE |