Hub : Traits : Epididymis fat weight : ← →

chr20:813,580-4,272,021

Trait: Epididymis fat weight

Best TWAS P=2.046189e-09 · Best GWAS P=1.271479e-07 conditioned to 1

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Znrd1as1	gene expression	ENSRNOG00000000778	0.20	0.07	lasso	32	0.11	7.4e-12	-4.8	-5.4	7.8e-08	0.83	0.42	0.57	FALSE
2	Adipose	AABR07044362.1	gene expression	ENSRNOG00000026051	0.10	0.02	enet	95	0.05	3.6e-06	3.9	5.5	3.2e-08	-0.49	0.77	0.23	FALSE
3	Adipose	RT1-T24-4	gene expression	ENSRNOG00000042905	0.43	0.23	enet	187	0.30	5.0e-34	4.1	5.9	4.3e-09	-0.82	0.99	0.01	FALSE
4	Adipose	NA	gene expression	ENSRNOG00000064836	0.07	0.03	blup	896	0.04	1.2e-05	-5.2	5.8	5.3e-09	-0.98	0.21	0.77	FALSE
5	Adipose	RT1-S3	intron excision ratio	chr20:2597970:2672329	0.32	0.02	enet	8	0.03	6.0e-04	-4.9	5.9	4.3e-09	-0.81	0.30	0.69	FALSE
6	Adipose	RT1-S3	intron excision ratio	chr20:2671794:2672329	0.27	0.06	blup	1098	0.07	7.1e-08	-4.9	-5.5	3.5e-08	1.00	0.28	0.72	FALSE
7	Adipose	RT1-S3	intron excision ratio	chr20:2741359:2741537	0.09	0.01	top1	1	0.01	1.7e-02	-5.1	-5.1	2.7e-07	0.92	0.04	0.04	FALSE
8	Adipose	RT1-N3	intron excision ratio	chr20:2643474:2691325	0.05	0.03	top1	1	0.03	4.3e-04	-5.1	5.1	2.7e-07	-0.93	0.06	0.11	FALSE
9	Adipose	RT1-N3	intron excision ratio	chr20:2663953:2691325	0.05	0.03	top1	1	0.03	4.7e-04	-5.1	5.1	2.7e-07	-0.93	0.05	0.10	FALSE
10	Adipose	RT1-N2	intron excision ratio	chr20:2643474:2691325	0.05	0.03	top1	1	0.03	4.3e-04	-5.1	5.1	2.7e-07	-0.91	0.05	0.12	FALSE
11	Adipose	RT1-N2	intron excision ratio	chr20:2663953:2691325	0.05	0.03	top1	1	0.03	4.7e-04	-5.1	5.1	2.7e-07	-0.91	0.05	0.11	FALSE
12	Adipose	NA	intron excision ratio	chr20:2741359:2741537	0.09	0.01	top1	1	0.01	1.7e-02	-5.1	-5.1	2.7e-07	0.88	0.03	0.04	FALSE
13	Adipose	RT1-T24-1	intron excision ratio	chr20:2690616:2690922	0.22	0.01	blup	1185	0.02	1.3e-03	3.9	-5.9	2.7e-09	0.85	0.35	0.24	FALSE
14	Adipose	RT1-T24-1	intron excision ratio	chr20:2741359:2741537	0.09	0.01	top1	1	0.01	1.7e-02	-5.1	-5.1	2.7e-07	0.92	0.04	0.04	FALSE
15	Adipose	RT1-T24-1	intron excision ratio	chr20:2773698:2774009	0.22	0.01	blup	1185	0.02	1.6e-03	4.0	-5.9	2.7e-09	0.85	0.35	0.25	FALSE
16	Adipose	RT1-T24-4	intron excision ratio	chr20:2643474:2691325	0.05	0.03	top1	1	0.03	4.3e-04	-5.1	5.1	2.7e-07	-0.95	0.06	0.08	FALSE
17	Adipose	RT1-T24-4	intron excision ratio	chr20:2663953:2691325	0.05	0.03	top1	1	0.03	4.7e-04	-5.1	5.1	2.7e-07	-0.95	0.06	0.08	FALSE
18	Adipose	RT1-T24-4	intron excision ratio	chr20:2690616:2690922	0.22	0.01	blup	1153	0.02	1.3e-03	3.9	-5.9	2.7e-09	0.85	0.34	0.24	FALSE
19	Adipose	RT1-T24-4	intron excision ratio	chr20:2741359:2741537	0.09	0.01	top1	1	0.01	1.7e-02	-5.1	-5.1	2.7e-07	0.93	0.04	0.04	FALSE
20	Adipose	RT1-T24-4	intron excision ratio	chr20:2773698:2774009	0.22	0.01	blup	1153	0.02	1.6e-03	4.0	-5.9	2.7e-09	0.85	0.34	0.25	FALSE
21	BLA	Gnl1	isoform ratio	ENSRNOT00000050373	0.51	0.18	lasso	29	0.21	1.6e-11	-5.1	5.2	2.0e-07	-0.98	0.32	0.68	FALSE
22	Brain	RT1-T24-1	alternative polyA	ENSRNOT00000078110	0.10	0.02	blup	1275	0.07	3.1e-07	4.1	6.0	2.1e-09	-0.88	0.74	0.25	FALSE
23	Brain	RT1-T24-1	alternative polyA	ENSRNOT00000116904	0.10	0.02	blup	1275	0.07	2.8e-07	4.1	-6.0	2.0e-09	0.87	0.77	0.23	TRUE
24	Brain	Mog	gene expression	ENSRNOG00000000775	0.41	0.28	lasso	37	0.28	1.7e-26	-4.8	-5.2	2.6e-07	0.97	0.42	0.58	FALSE
25	Brain	Gnl1	gene expression	ENSRNOG00000000798	0.14	0.14	blup	1332	0.17	3.2e-15	-5.2	5.4	5.1e-08	-0.99	0.33	0.67	FALSE
26	Brain	Flot1	gene expression	ENSRNOG00000000826	0.23	0.16	enet	41	0.20	3.0e-18	4.0	5.8	6.5e-09	-0.60	0.99	0.01	TRUE
27	Brain	AABR07044397.1	gene expression	ENSRNOG00000050998	0.05	0.03	blup	826	0.03	7.2e-04	-5.1	5.8	8.2e-09	-0.97	0.21	0.72	FALSE
28	Brain	Gnl1	isoform ratio	ENSRNOT00000050373	0.36	0.34	blup	1332	0.36	3.0e-34	-5.0	5.1	3.2e-07	-1.00	0.31	0.69	FALSE
29	Brain	Gnl1	isoform ratio	ENSRNOT00000090999	0.34	0.32	blup	1332	0.34	1.1e-32	-5.0	-5.1	2.9e-07	1.00	0.31	0.69	FALSE
30	Brain	Flot1	isoform ratio	ENSRNOT00000090039	0.04	0.03	top1	1	0.03	1.0e-03	-5.1	-5.1	3.3e-07	1.00	0.06	0.06	TRUE
31	Brain	RT1-T24-1	isoform ratio	ENSRNOT00000116904	0.17	0.07	blup	1275	0.15	2.0e-13	4.0	-6.0	2.1e-09	0.87	0.95	0.05	FALSE
32	Brain	RT1-CE11	intron excision ratio	chr20:3257619:3257752	0.60	0.32	lasso	8	0.40	6.7e-40	-2.8	-5.4	6.9e-08	-0.55	1.00	0.00	TRUE
33	Brain	RT1-CE11	intron excision ratio	chr20:3257799:3258008	0.73	0.32	lasso	9	0.40	2.6e-39	-3.7	-5.3	1.4e-07	0.66	0.99	0.01	FALSE
34	Brain	NA	intron excision ratio	chr20:3257799:3258008	0.78	0.32	lasso	9	0.40	2.4e-39	-3.7	-5.3	1.3e-07	0.66	0.99	0.01	FALSE
35	Brain	RT1-CE16	intron excision ratio	chr20:3257799:3258008	0.78	0.32	lasso	9	0.40	2.5e-39	-3.7	-5.3	1.2e-07	0.66	0.99	0.01	FALSE
36	Brain	RT1-CE15	intron excision ratio	chr20:3257799:3258008	0.78	0.32	lasso	9	0.40	2.4e-39	-3.7	-5.3	1.3e-07	0.66	0.99	0.01	FALSE
37	Brain	RT1-CE14	intron excision ratio	chr20:3257799:3258008	0.78	0.32	lasso	9	0.40	2.5e-39	-3.7	-5.3	1.3e-07	0.66	0.99	0.01	FALSE
38	Eye	NA	alternative polyA	ENSRNOT00000096214	0.51	0.07	blup	2463	0.09	2.1e-02	-4.0	-5.2	2.5e-07	0.92	0.26	0.34	FALSE
39	Eye	Zfp57	gene expression	ENSRNOG00000022730	0.54	0.07	lasso	21	0.09	1.8e-02	-4.5	-5.2	2.3e-07	0.79	0.37	0.21	FALSE
40	IL	NA	gene expression	ENSRNOG00000066691	0.20	-0.01	enet	14	0.03	6.1e-02	-5.2	5.6	1.7e-08	-0.80	0.32	0.38	FALSE
41	IL	Gnl1	isoform ratio	ENSRNOT00000050373	0.45	0.24	lasso	3	0.29	1.3e-07	-4.9	5.2	2.4e-07	-0.98	0.35	0.65	FALSE
42	IL	Gnl1	isoform ratio	ENSRNOT00000090999	0.42	0.23	lasso	3	0.27	3.5e-07	-4.9	-5.1	2.7e-07	0.97	0.35	0.65	FALSE
43	LHb	Gnl1	isoform ratio	ENSRNOT00000050373	0.58	0.15	lasso	4	0.31	4.4e-08	-5.1	5.9	3.7e-09	-0.92	0.35	0.65	FALSE
44	LHb	Gnl1	isoform ratio	ENSRNOT00000090999	0.50	0.23	blup	1318	0.25	9.3e-07	-5.1	-5.5	2.9e-08	1.00	0.35	0.64	FALSE
45	LHb	RT1-S3	intron excision ratio	chr20:2691928:2692062	0.28	0.05	blup	1177	0.15	2.2e-04	4.0	-6.0	2.5e-09	0.83	0.40	0.18	FALSE
46	LHb	NA	intron excision ratio	chr20:2691928:2692062	0.27	0.08	blup	1000	0.15	2.1e-04	4.0	-6.0	2.6e-09	0.83	0.37	0.19	FALSE
47	LHb	RT1-T24-1	intron excision ratio	chr20:2691928:2692062	0.28	0.05	blup	1264	0.15	2.2e-04	4.0	-6.0	2.3e-09	0.83	0.42	0.17	FALSE
48	LHb	RT1-T24-4	intron excision ratio	chr20:2691928:2692062	0.28	0.05	blup	1232	0.15	2.2e-04	4.0	-6.0	2.3e-09	0.84	0.41	0.18	FALSE
49	Liver	Gnl1	gene expression	ENSRNOG00000000798	0.10	0.05	blup	1242	0.06	7.5e-07	4.3	-5.1	2.6e-07	0.44	0.99	0.01	FALSE
50	Liver	Atat1	gene expression	ENSRNOG00000000809	0.12	0.08	blup	1276	0.08	3.8e-09	3.9	5.2	2.1e-07	-0.43	0.99	0.01	FALSE
51	Liver	RT1-S3	intron excision ratio	chr20:2597970:2672329	0.46	0.15	lasso	30	0.23	4.3e-25	-5.1	5.7	9.5e-09	-0.79	0.28	0.72	FALSE
52	Liver	RT1-S3	intron excision ratio	chr20:2671794:2672329	0.44	0.15	lasso	37	0.23	3.2e-25	-5.1	-5.8	8.5e-09	0.82	0.27	0.73	FALSE
53	Liver	RT1-S3	intron excision ratio	chr20:2672840:2673017	0.10	0.04	blup	1098	0.05	1.1e-06	-5.2	-5.6	1.7e-08	0.99	0.27	0.73	FALSE
54	Liver	RT1-S3	intron excision ratio	chr20:2691672:2741756	0.07	0.02	enet	32	0.03	1.2e-04	-4.9	5.7	1.3e-08	-0.96	0.28	0.60	FALSE
55	Liver	NA	intron excision ratio	chr20:2672840:2673017	0.10	0.04	blup	921	0.05	1.2e-06	-5.2	-5.6	1.7e-08	0.99	0.21	0.79	FALSE
56	Liver	NA	intron excision ratio	chr20:2691672:2741756	0.07	0.02	enet	32	0.03	1.2e-04	-4.9	5.7	1.3e-08	-0.96	0.23	0.64	FALSE
57	Liver	RT1-T24-1	intron excision ratio	chr20:2672386:2740895	0.17	0.07	enet	39	0.09	5.8e-10	-5.2	5.6	2.7e-08	-0.90	0.29	0.71	FALSE
58	Liver	RT1-T24-1	intron excision ratio	chr20:2672840:2673017	0.10	0.04	blup	1185	0.05	1.1e-06	-5.2	-5.7	1.6e-08	0.99	0.29	0.70	FALSE
59	Liver	RT1-T24-1	intron excision ratio	chr20:2690979:2724284	0.04	0.00	lasso	4	0.01	3.3e-02	-4.3	5.3	1.0e-07	-0.73	0.17	0.23	TRUE
60	Liver	RT1-T24-1	intron excision ratio	chr20:2691672:2741756	0.07	0.02	enet	32	0.03	1.2e-04	-4.9	5.7	1.3e-08	-0.96	0.30	0.58	FALSE
61	Liver	RT1-T24-1	intron excision ratio	chr20:2694312:2725194	0.38	0.11	lasso	38	0.14	5.6e-15	4.1	5.9	4.2e-09	-0.26	0.99	0.01	TRUE
62	Liver	RT1-T24-4	intron excision ratio	chr20:2672840:2673017	0.10	0.04	blup	1153	0.05	1.1e-06	-5.2	-5.7	1.6e-08	0.99	0.29	0.71	FALSE
63	Liver	RT1-T24-4	intron excision ratio	chr20:2691672:2741756	0.07	0.02	enet	32	0.03	1.2e-04	-4.9	5.7	1.3e-08	-0.96	0.30	0.58	FALSE
64	Liver	NA	intron excision ratio	chr20:3317306:3317493	0.60	0.16	enet	380	0.25	1.4e-27	-2.5	5.2	1.9e-07	-0.64	0.99	0.01	FALSE
65	Liver	RT1-CE16	intron excision ratio	chr20:3317306:3317493	0.60	0.16	enet	380	0.25	1.4e-27	-2.5	5.2	1.9e-07	-0.64	0.99	0.01	FALSE
66	Liver	RT1-CE15	intron excision ratio	chr20:3317306:3317493	0.60	0.16	enet	380	0.25	1.4e-27	-2.5	5.2	1.9e-07	-0.64	0.99	0.01	FALSE
67	Liver	RT1-CE14	intron excision ratio	chr20:3317306:3317493	0.59	0.16	enet	389	0.25	1.4e-27	-2.5	5.2	2.3e-07	-0.65	0.99	0.01	FALSE
68	NAcc	Gnl1	gene expression	ENSRNOG00000000798	0.10	0.00	blup	1247	0.05	1.4e-04	4.0	5.9	4.0e-09	-0.86	0.60	0.27	FALSE
69	NAcc	Flot1	gene expression	ENSRNOG00000000826	0.07	0.04	top1	1	0.04	9.4e-04	-5.1	5.1	3.5e-07	-0.98	0.10	0.12	FALSE
70	NAcc	Ddx39b	gene expression	ENSRNOG00000000841	0.33	0.30	blup	3001	0.33	5.9e-25	-3.8	-5.2	1.9e-07	0.72	0.98	0.02	FALSE
71	NAcc	AABR07044375.1	gene expression	ENSRNOG00000050215	0.43	0.29	lasso	17	0.33	3.7e-25	-5.2	-5.2	2.3e-07	1.00	0.26	0.74	FALSE
72	NAcc	Tubb5	gene expression	ENSRNOG00000061216	0.11	0.01	blup	1304	0.08	2.1e-06	4.2	5.8	6.4e-09	-0.84	0.81	0.16	FALSE
73	NAcc	Gnl1	isoform ratio	ENSRNOT00000050373	0.21	0.17	top1	1	0.17	5.7e-13	-5.2	5.2	2.1e-07	-0.98	0.29	0.71	FALSE
74	NAcc	Gnl1	isoform ratio	ENSRNOT00000090999	0.22	0.19	lasso	16	0.19	3.2e-14	-5.2	-5.5	4.1e-08	0.99	0.30	0.70	FALSE
75	NAcc	RT1-T24-1	isoform ratio	ENSRNOT00000061299	0.10	0.02	blup	1191	0.05	9.1e-05	-5.1	-5.9	3.6e-09	0.93	0.31	0.63	FALSE
76	NAcc	RT1-T24-1	intron excision ratio	chr20:2694069:2724607	0.15	0.11	enet	109	0.12	4.4e-09	4.1	5.1	3.0e-07	-0.92	0.99	0.01	FALSE
77	NAcc	NA	intron excision ratio	chr20:3297603:3297737	0.32	0.19	blup	2437	0.23	6.0e-17	-3.8	5.1	2.8e-07	-0.92	0.95	0.05	FALSE
78	NAcc	RT1-CE16	intron excision ratio	chr20:3297603:3297737	0.32	0.19	blup	2437	0.23	6.0e-17	-3.8	5.1	2.8e-07	-0.92	0.95	0.05	FALSE
79	NAcc	RT1-CE15	intron excision ratio	chr20:3297603:3297737	0.32	0.19	blup	2437	0.23	6.0e-17	-3.8	5.1	2.8e-07	-0.92	0.95	0.05	FALSE
80	OFC	RT1-N3	gene expression	ENSRNOG00000000795	0.44	0.20	blup	1124	0.31	3.7e-08	-5.2	-5.4	7.7e-08	1.00	0.30	0.70	FALSE
81	OFC	RT1-T24-1	isoform ratio	ENSRNOT00000061299	0.30	0.10	lasso	4	0.11	1.5e-03	4.0	-5.7	9.5e-09	0.95	0.71	0.08	FALSE
82	OFC	RT1-T24-1	isoform ratio	ENSRNOT00000070903	0.36	0.18	blup	1268	0.20	1.4e-05	3.9	5.5	4.0e-08	-0.55	0.96	0.01	FALSE
83	OFC	RT1-T24-1	isoform ratio	ENSRNOT00000116904	0.25	0.11	blup	1268	0.13	5.4e-04	4.0	-5.7	1.1e-08	0.64	0.70	0.06	FALSE
84	OFC	NA	isoform ratio	ENSRNOT00000096214	0.23	0.06	blup	2451	0.14	4.1e-04	-3.6	5.4	6.6e-08	-0.91	0.35	0.41	FALSE
85	OFC	Dhx16	intron excision ratio	chr20:2868604:2868779	0.17	0.01	enet	5	0.09	4.3e-03	4.1	5.3	1.3e-07	-0.12	0.25	0.15	FALSE
86	OFC	RT1-T24-1	intron excision ratio	chr20:2723920:2724226	0.19	0.09	blup	1268	0.10	2.1e-03	4.1	5.9	3.6e-09	-0.75	0.28	0.13	FALSE
87	OFC	RT1-T24-4	intron excision ratio	chr20:2723920:2724226	0.19	0.09	blup	1236	0.10	2.1e-03	4.1	5.9	3.5e-09	-0.76	0.28	0.13	FALSE
88	OFC	NA	intron excision ratio	chr20:3257799:3258008	0.70	0.19	blup	2448	0.35	4.4e-09	-3.7	-5.1	3.2e-07	0.91	0.63	0.35	FALSE
89	OFC	NA	intron excision ratio	chr20:3258719:3317031	0.31	0.00	blup	2448	0.00	2.8e-01	4.0	5.2	2.1e-07	-0.60	0.35	0.13	FALSE
90	OFC	NA	intron excision ratio	chr20:3356537:3357504	0.22	0.13	enet	10	0.14	4.3e-04	-1.5	5.5	3.4e-08	-0.99	0.83	0.01	FALSE
91	OFC	RT1-CE16	intron excision ratio	chr20:3257799:3258008	0.70	0.19	blup	2448	0.35	4.4e-09	-3.7	-5.1	3.2e-07	0.91	0.63	0.35	FALSE
92	OFC	RT1-CE16	intron excision ratio	chr20:3258719:3317031	0.31	0.00	blup	2448	0.00	2.8e-01	4.0	5.2	2.1e-07	-0.60	0.35	0.13	FALSE
93	OFC	RT1-CE16	intron excision ratio	chr20:3356537:3357504	0.22	0.13	enet	10	0.14	4.3e-04	-1.5	5.5	3.4e-08	-0.99	0.83	0.01	FALSE
94	OFC	RT1-CE15	intron excision ratio	chr20:3257799:3258008	0.70	0.19	blup	2448	0.35	4.4e-09	-3.7	-5.1	3.2e-07	0.91	0.63	0.35	FALSE
95	OFC	RT1-CE15	intron excision ratio	chr20:3258719:3317031	0.31	0.00	blup	2448	0.00	2.8e-01	4.0	5.2	2.1e-07	-0.60	0.35	0.13	FALSE
96	OFC	RT1-CE15	intron excision ratio	chr20:3356537:3357504	0.22	0.13	enet	10	0.14	4.3e-04	-1.5	5.5	3.4e-08	-0.99	0.83	0.01	FALSE
97	PL	Gnl1	gene expression	ENSRNOG00000000798	0.10	0.06	blup	1247	0.07	8.3e-06	4.3	5.7	1.2e-08	-0.69	0.98	0.01	FALSE
98	PL	AABR07044397.1	gene expression	ENSRNOG00000050998	0.04	0.00	blup	744	0.02	7.3e-03	4.0	5.9	3.1e-09	-0.86	0.16	0.23	FALSE
99	PL	Gnl1	isoform ratio	ENSRNOT00000050373	0.24	0.20	top1	1	0.20	6.6e-15	-5.2	5.2	2.2e-07	-0.97	0.29	0.71	FALSE
100	PL	Gnl1	isoform ratio	ENSRNOT00000090999	0.23	0.20	top1	1	0.20	5.2e-15	-5.2	-5.2	2.2e-07	0.98	0.29	0.71	FALSE
101	PL	RT1-S3	intron excision ratio	chr20:2597970:2672329	0.13	0.04	enet	95	0.07	8.4e-06	4.1	5.1	2.8e-07	-0.76	0.96	0.02	FALSE
102	PL	RT1-S3	intron excision ratio	chr20:2671794:2672329	0.09	0.01	blup	1105	0.04	2.5e-04	4.1	-5.9	3.2e-09	0.79	0.54	0.16	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.