Best TWAS P=7.68e-10 · Best GWAS P=1.86e-09 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | ENSRNOG00000058912 | alternative polyA | ENSRNOT00000090993 | 0.06 | 11 | 0.03 | 5.0e-04 | -5.53 | 3.25e-08 | 0.85 | FALSE |
Adipose | ENSRNOG00000058912 | alternative polyA | ENSRNOT00000115941 | 0.08 | 13 | 0.04 | 6.6e-05 | 5.53 | 3.26e-08 | 0.9 | FALSE |
Adipose | Spdef | gene expression | ENSRNOG00000000491 | 0.11 | 1 | 0.05 | 7.4e-06 | 5.93 | 3.10e-09 | 0.73 | TRUE |
Adipose | Snrpc | gene expression | ENSRNOG00000000493 | 0.7 | 230 | 0.26 | 3.5e-28 | -5.32 | 1.06e-07 | 0.83 | FALSE |
Adipose | Ilrun | gene expression | ENSRNOG00000038883 | 0.72 | 101 | 0.52 | 9.1e-68 | 5.97 | 2.42e-09 | 0.85 | FALSE |
Adipose | ENSRNOG00000058912 | gene expression | ENSRNOG00000058912 | 0.72 | 61 | 0.49 | 1.9e-61 | 5.96 | 2.54e-09 | 0.91 | FALSE |
BLA | Nudt3 | gene expression | ENSRNOG00000061176 | 0.25 | 1 | 0.11 | 2.0e-06 | -5.53 | 3.19e-08 | 0.39 | FALSE |
Eye | Ilrun | gene expression | ENSRNOG00000038883 | 0.91 | 2269 | 0.29 | 2.2e-05 | 5.41 | 6.37e-08 | 0.68 | FALSE |
IL | ENSRNOG00000058912 | gene expression | ENSRNOG00000058912 | 0.33 | 1 | 0.12 | 9.2e-04 | 5.54 | 3.06e-08 | 0.06 | FALSE |
IL | Nudt3 | gene expression | ENSRNOG00000061176 | 0.31 | 112 | 0.12 | 7.5e-04 | -6.07 | 1.30e-09 | 0.19 | FALSE |
IL | Taf11 | mRNA stability | ENSRNOG00000024601 | 0.49 | 2286 | 0.26 | 6.6e-07 | 5.86 | 4.56e-09 | 0.16 | FALSE |
LHb | Ilrun | gene expression | ENSRNOG00000038883 | 0.75 | 2267 | 0.16 | 1.2e-04 | 5.37 | 8.08e-08 | 0.88 | FALSE |
Liver | Hmga1 | gene expression | ENSRNOG00000000488 | 0.09 | 2507 | 0.01 | 6.9e-02 | -5.7 | 1.21e-08 | 0.65 | FALSE |
Liver | Snrpc | gene expression | ENSRNOG00000000493 | 0.9 | 147 | 0.48 | 1.8e-59 | -6.15 | 7.68e-10 | 0.85 | TRUE |
Liver | Taf11 | gene expression | ENSRNOG00000024601 | 0.09 | 58 | 0.03 | 5.0e-04 | -6.11 | 9.76e-10 | 0.23 | TRUE |
Liver | Ilrun | gene expression | ENSRNOG00000038883 | 0.87 | 68 | 0.41 | 7.0e-49 | 5.29 | 1.25e-07 | 0.85 | FALSE |
Liver | Nudt3 | gene expression | ENSRNOG00000061176 | 0.11 | 44 | 0.03 | 1.8e-04 | -5.59 | 2.28e-08 | 0.53 | TRUE |
Liver | Snrpc | intron excision ratio | chr20:5896204:5896392 | 0.54 | 164 | 0.39 | 2.2e-45 | -5.42 | 6.06e-08 | 0.44 | FALSE |
NAcc | Ilrun | gene expression | ENSRNOG00000038883 | 0.82 | 2268 | 0.62 | 4.6e-58 | 5.46 | 4.68e-08 | 0.92 | FALSE |
NAcc | ENSRNOG00000058912 | gene expression | ENSRNOG00000058912 | 0.21 | 1 | 0.11 | 2.2e-08 | 5.92 | 3.23e-09 | 0.91 | TRUE |
OFC | Uhrf1bp1 | isoform ratio | ENSRNOT00000102198 | 0.2 | 2284 | 0.04 | 4.3e-02 | 5.35 | 8.81e-08 | 0.43 | FALSE |
OFC | Ilrun | intron excision ratio | chr20:5812549:5825543 | 0.52 | 1 | 0.17 | 7.9e-05 | -5.54 | 3.06e-08 | 0.07 | FALSE |
PL | Pacsin1 | gene expression | ENSRNOG00000054603 | 0.13 | 34 | 0.12 | 1.3e-09 | 5.11 | 3.25e-07 | 0.09 | FALSE |
PL | ENSRNOG00000058912 | gene expression | ENSRNOG00000058912 | 0.37 | 2282 | 0.17 | 1.2e-12 | 5.47 | 4.43e-08 | 0.92 | FALSE |
PL | Nudt3 | gene expression | ENSRNOG00000061176 | 0.22 | 1 | 0.1 | 2.6e-08 | -5.52 | 3.42e-08 | 0.52 | TRUE |
PL | Ilrun | intron excision ratio | chr20:5812549:5825543 | 0.09 | 2268 | 0.04 | 5.1e-04 | -5.92 | 3.21e-09 | 0.39 | FALSE |