Hub : Traits : Tail length : ← →

chr20:883,910-4,164,571

Trait: Tail length

Best TWAS P=2.994828e-08 · Best GWAS P=1.942463e-06 conditioned to 0.9418898

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	RT1-N3	alternative polyA	ENSRNOT00000001035	0.16	0.12	enet	23	0.14	1.5e-15	-4.1	-5.1	3.2e-07	-0.57	0.64	0.36	FALSE
2	Adipose	RT1-S3	intron excision ratio	chr20:2624215:2624418	0.35	0.06	lasso	39	0.10	5.6e-11	4.3	-5.4	6.9e-08	-0.84	0.32	0.67	FALSE
3	Adipose	RT1-S3	intron excision ratio	chr20:2633040:2633243	0.35	0.06	lasso	61	0.10	5.9e-11	4.3	-5.4	6.8e-08	-0.84	0.32	0.67	FALSE
4	Adipose	RT1-S3	intron excision ratio	chr20:2691672:2691881	0.57	0.22	enet	61	0.30	1.2e-33	4.6	5.4	5.8e-08	0.75	0.30	0.70	FALSE
5	Adipose	NA	intron excision ratio	chr20:2626584:2635694	0.06	0.00	enet	38	0.01	7.5e-03	4.4	-5.5	4.4e-08	-0.86	0.22	0.62	FALSE
6	Adipose	NA	intron excision ratio	chr20:2626584:2657802	0.07	0.00	enet	26	0.01	3.3e-02	4.4	-5.5	4.5e-08	-0.87	0.22	0.62	FALSE
7	Adipose	NA	intron excision ratio	chr20:2691672:2691881	0.56	0.22	enet	214	0.30	1.1e-33	4.6	5.4	6.6e-08	0.83	0.24	0.76	FALSE
8	Adipose	RT1-T24-1	intron excision ratio	chr20:2691672:2691881	0.59	0.22	enet	61	0.30	1.2e-33	4.6	5.4	5.8e-08	0.75	0.32	0.67	FALSE
9	Adipose	RT1-T24-4	intron excision ratio	chr20:2691672:2691881	0.58	0.22	enet	61	0.30	1.2e-33	4.6	5.4	5.8e-08	0.75	0.32	0.68	FALSE
10	Adipose	RT1-M6-2	mRNA stability	ENSRNOG00000040052	0.02	0.01	enet	16	0.02	5.1e-03	-3.6	-5.1	2.9e-07	-0.78	0.52	0.16	FALSE
11	BLA	RT1-N3	gene expression	ENSRNOG00000000795	0.66	0.30	enet	109	0.49	2.6e-29	4.4	5.4	7.3e-08	0.87	0.34	0.66	FALSE
12	BLA	Gtf2h4	gene expression	ENSRNOG00000000831	0.19	0.11	blup	1269	0.14	3.6e-08	-3.7	5.2	1.6e-07	0.74	0.69	0.30	FALSE
13	BLA	Ddr1	gene expression	ENSRNOG00000057125	0.29	0.16	blup	1360	0.22	7.9e-12	-4.2	5.4	5.3e-08	0.75	0.71	0.28	FALSE
14	BLA	RT1-CE11	intron excision ratio	chr20:3276101:3276342	0.13	0.02	enet	88	0.06	4.2e-04	-4.3	5.1	2.7e-07	0.74	0.45	0.20	FALSE
15	BLA	RT1-CE11	intron excision ratio	chr20:3297784:3339747	0.22	0.00	blup	2863	0.06	5.1e-04	-3.7	-5.3	1.2e-07	-0.63	0.36	0.23	FALSE
16	BLA	NA	intron excision ratio	chr20:3276101:3276342	0.11	0.02	enet	100	0.04	2.1e-03	-4.3	5.5	3.7e-08	0.82	0.47	0.18	FALSE
17	BLA	NA	intron excision ratio	chr20:3297784:3339747	0.25	0.00	blup	2460	0.06	6.2e-04	-3.7	-5.4	8.3e-08	-0.62	0.33	0.23	FALSE
18	BLA	RT1-CE16	intron excision ratio	chr20:3276101:3276342	0.11	0.02	enet	100	0.04	2.1e-03	-4.3	5.5	3.7e-08	0.82	0.47	0.18	FALSE
19	BLA	RT1-CE16	intron excision ratio	chr20:3297784:3339747	0.25	0.00	blup	2460	0.06	6.2e-04	-3.7	-5.4	8.3e-08	-0.62	0.33	0.23	FALSE
20	BLA	RT1-CE15	intron excision ratio	chr20:3276101:3276342	0.11	0.02	enet	100	0.04	2.1e-03	-4.3	5.5	3.7e-08	0.82	0.47	0.18	FALSE
21	BLA	RT1-CE15	intron excision ratio	chr20:3297784:3339747	0.25	0.00	blup	2460	0.06	6.2e-04	-3.7	-5.4	8.3e-08	-0.62	0.33	0.23	FALSE
22	BLA	RT1-CE14	intron excision ratio	chr20:3276101:3276342	0.11	0.02	enet	110	0.05	1.7e-03	-4.3	5.5	3.0e-08	0.85	0.46	0.19	TRUE
23	BLA	RT1-CE14	intron excision ratio	chr20:3297784:3339747	0.24	0.00	blup	2511	0.06	5.9e-04	-3.7	-5.3	1.0e-07	-0.63	0.33	0.22	FALSE
24	Brain	RT1-N3	alternative TSS	ENSRNOT00000001035	0.14	0.05	enet	9	0.06	1.5e-06	-4.1	-5.2	2.1e-07	-0.56	0.64	0.34	FALSE
25	Brain	RT1-N3	alternative TSS	ENSRNOT00000115132	0.13	0.05	enet	9	0.06	2.2e-06	-4.1	5.2	1.9e-07	0.59	0.64	0.34	FALSE
26	Brain	RT1-N3	gene expression	ENSRNOG00000000795	0.62	0.35	lasso	25	0.54	3.8e-59	-4.2	5.4	8.2e-08	0.78	0.65	0.34	FALSE
27	Brain	RT1-T24-1	isoform ratio	ENSRNOT00000078454	0.08	0.04	blup	1275	0.06	2.7e-06	-4.1	-5.4	7.8e-08	-0.74	0.71	0.28	FALSE
28	Brain	RT1-S3	intron excision ratio	chr20:2672840:2673017	0.15	0.01	blup	1188	0.05	1.8e-05	-4.2	-5.4	7.2e-08	-0.89	0.43	0.54	FALSE
29	Brain	RT1-S3	intron excision ratio	chr20:2741359:2741537	0.16	0.11	blup	1188	0.12	7.1e-11	4.6	5.2	2.0e-07	0.95	0.33	0.67	FALSE
30	Brain	Prr3	intron excision ratio	chr20:2793415:2793683	0.04	0.00	blup	1332	0.01	4.6e-02	4.4	-5.2	1.6e-07	-0.91	0.28	0.34	FALSE
31	Brain	NA	intron excision ratio	chr20:2691672:2741756	0.03	0.01	blup	1011	0.01	1.4e-02	4.3	-5.3	8.8e-08	-0.91	0.20	0.35	FALSE
32	Brain	NA	intron excision ratio	chr20:2741569:2741756	0.31	0.01	blup	1011	0.04	8.1e-05	-4.1	5.4	7.5e-08	0.87	0.38	0.55	FALSE
33	Brain	NA	intron excision ratio	chr20:2741803:2741939	0.17	0.09	blup	1011	0.11	3.9e-10	4.6	-5.2	1.7e-07	-0.94	0.27	0.72	FALSE
34	Brain	RT1-T24-1	intron excision ratio	chr20:2672840:2673017	0.14	0.01	blup	1275	0.05	1.8e-05	-4.2	-5.4	7.7e-08	-0.89	0.45	0.52	FALSE
35	Brain	RT1-T24-1	intron excision ratio	chr20:2691672:2741756	0.03	0.01	blup	1275	0.02	1.2e-02	4.3	-5.3	8.9e-08	-0.91	0.26	0.33	FALSE
36	Brain	RT1-T24-1	intron excision ratio	chr20:2741359:2741537	0.16	0.11	blup	1275	0.12	6.9e-11	4.6	5.2	2.2e-07	0.96	0.35	0.65	FALSE
37	Brain	RT1-T24-1	intron excision ratio	chr20:2741569:2741756	0.18	0.01	blup	1275	0.04	7.5e-05	-4.1	5.4	7.4e-08	0.88	0.46	0.49	FALSE
38	Brain	RT1-T24-1	intron excision ratio	chr20:2741803:2741939	0.16	0.09	blup	1275	0.11	2.8e-10	4.6	-5.2	1.7e-07	-0.95	0.35	0.65	FALSE
39	Brain	RT1-CE11	intron excision ratio	chr20:3276101:3276342	0.17	0.05	blup	2863	0.12	6.2e-11	-3.4	5.4	5.9e-08	0.80	0.55	0.44	FALSE
40	Brain	RT1-T24-4	intron excision ratio	chr20:2672840:2673017	0.14	0.01	blup	1243	0.05	1.8e-05	-4.2	-5.4	7.5e-08	-0.89	0.44	0.53	FALSE
41	Brain	RT1-T24-4	intron excision ratio	chr20:2691672:2741756	0.03	0.01	blup	1243	0.02	1.2e-02	4.3	-5.4	8.8e-08	-0.91	0.25	0.33	FALSE
42	Brain	RT1-T24-4	intron excision ratio	chr20:2741359:2741537	0.16	0.11	blup	1243	0.12	7.0e-11	4.6	5.2	2.1e-07	0.96	0.34	0.65	FALSE
43	Brain	RT1-T24-4	intron excision ratio	chr20:2741569:2741756	0.19	0.01	blup	1243	0.04	7.6e-05	-4.1	5.4	7.1e-08	0.88	0.45	0.50	FALSE
44	Brain	RT1-T24-4	intron excision ratio	chr20:2741803:2741939	0.16	0.09	blup	1243	0.11	2.9e-10	4.6	-5.2	1.7e-07	-0.95	0.34	0.65	FALSE
45	Brain	NA	intron excision ratio	chr20:3276101:3276342	0.17	0.05	blup	2460	0.12	7.9e-11	-3.4	5.5	3.8e-08	0.80	0.50	0.49	FALSE
46	Brain	RT1-CE16	intron excision ratio	chr20:3276101:3276342	0.17	0.05	blup	2460	0.12	7.9e-11	-3.4	5.5	3.8e-08	0.80	0.50	0.49	FALSE
47	Brain	RT1-CE15	intron excision ratio	chr20:3276101:3276342	0.17	0.05	blup	2460	0.12	7.9e-11	-3.4	5.5	3.8e-08	0.80	0.50	0.49	FALSE
48	Brain	RT1-CE14	intron excision ratio	chr20:3276101:3276342	0.17	0.05	blup	2511	0.12	7.3e-11	-3.4	5.5	4.9e-08	0.80	0.52	0.47	FALSE
49	Eye	NA	gene expression	ENSRNOG00000031607	0.78	0.19	enet	13	0.31	1.2e-05	1.7	-5.2	1.9e-07	-0.54	0.62	0.18	FALSE
50	Eye	NA	gene expression	ENSRNOG00000064836	0.56	-0.01	blup	986	0.06	4.3e-02	4.3	-5.4	6.0e-08	-0.84	0.16	0.20	FALSE
51	Eye	NA	intron excision ratio	chr20:2626584:2657802	0.57	0.02	blup	1011	0.10	1.5e-02	-4.1	-5.4	6.7e-08	-0.76	0.18	0.17	FALSE
52	Eye	RT1-CE11	intron excision ratio	chr20:3300498:3317965	0.44	-0.02	blup	2863	0.06	4.5e-02	-3.0	5.2	2.0e-07	0.63	0.28	0.10	FALSE
53	Eye	RT1-CE14	intron excision ratio	chr20:3300498:3317965	0.44	-0.02	blup	2511	0.06	4.4e-02	-3.0	5.1	3.3e-07	0.61	0.27	0.10	FALSE
54	Eye	NA	intron excision ratio	chr20:3119281:3124288	0.53	0.02	blup	1652	0.04	8.1e-02	-4.1	5.3	9.8e-08	0.82	0.20	0.17	FALSE
55	IL	NA	isoform ratio	ENSRNOT00000050099	0.21	0.02	blup	1004	0.09	3.0e-03	-4.1	-5.4	6.2e-08	-0.70	0.37	0.28	FALSE
56	IL	RT1-CE15	isoform ratio	ENSRNOT00000112433	0.12	0.03	enet	25	0.08	6.4e-03	-3.2	5.4	7.1e-08	0.69	0.58	0.07	FALSE
57	IL	Abcf1	intron excision ratio	chr20:2802656:2807786	0.20	0.08	enet	13	0.14	2.6e-04	-4.2	-5.5	4.2e-08	-0.90	0.43	0.21	FALSE
58	LHb	NA	alternative polyA	ENSRNOT00000048535	0.19	0.03	blup	1000	0.11	1.4e-03	-4.2	5.3	1.0e-07	0.64	0.34	0.22	FALSE
59	LHb	NA	alternative polyA	ENSRNOT00000050099	0.22	0.06	blup	1000	0.14	3.6e-04	-4.2	-5.3	1.3e-07	-0.62	0.43	0.25	FALSE
60	LHb	RT1-N3	gene expression	ENSRNOG00000000795	0.34	0.02	enet	10	0.15	2.3e-04	-4.2	5.3	8.8e-08	0.72	0.34	0.40	FALSE
61	Liver	AABR07044397.1	gene expression	ENSRNOG00000050998	0.09	0.04	enet	114	0.04	1.1e-05	4.7	-5.3	1.5e-07	-0.86	0.21	0.79	FALSE
62	Liver	Ddr1	gene expression	ENSRNOG00000057125	0.03	0.00	blup	1297	0.01	1.5e-02	-4.2	5.2	1.8e-07	0.81	0.29	0.31	FALSE
63	Liver	NA	intron excision ratio	chr20:2651658:2657802	0.05	0.00	enet	7	0.00	5.5e-01	4.2	-5.3	1.1e-07	-0.66	0.11	0.15	FALSE
64	NAcc	NA	gene expression	ENSRNOG00000065364	0.06	0.00	blup	2961	0.02	2.3e-02	-3.1	-5.3	9.4e-08	-0.50	0.53	0.09	FALSE
65	NAcc	RT1-CE11	intron excision ratio	chr20:3297784:3339747	0.28	0.08	enet	226	0.14	2.4e-10	-3.0	-5.2	2.0e-07	-0.49	0.90	0.08	FALSE
66	NAcc	RT1-CE14	intron excision ratio	chr20:3297784:3339747	0.28	0.08	enet	236	0.14	2.8e-10	-3.0	-5.2	1.9e-07	-0.50	0.92	0.07	FALSE
67	OFC	NA	alternative TSS	ENSRNOT00000105641	0.25	0.04	blup	2451	0.18	3.8e-05	-3.2	-5.2	1.9e-07	-0.71	0.74	0.17	FALSE
68	OFC	Gnl1	isoform ratio	ENSRNOT00000050373	0.33	0.21	enet	13	0.28	2.4e-07	4.4	-5.2	2.4e-07	-0.81	0.38	0.58	FALSE
69	PL	RT1-N3	gene expression	ENSRNOG00000000795	0.53	0.38	enet	49	0.48	1.1e-40	4.5	5.2	2.1e-07	0.49	0.28	0.71	FALSE
70	PL	AABR07044375.1	gene expression	ENSRNOG00000050215	0.57	0.23	enet	156	0.32	1.3e-24	-4.3	5.4	6.2e-08	0.70	0.62	0.37	FALSE
71	PL	NA	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	5	0.02	1.7e-02	-4.1	-5.2	2.1e-07	-0.66	0.28	0.30	FALSE
72	PL	RT1-T24-1	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	7	0.02	1.7e-02	-4.0	-5.1	3.2e-07	-0.65	0.34	0.27	FALSE
73	PL	RT1-CE11	intron excision ratio	chr20:3379574:3379756	0.18	0.05	blup	2840	0.10	4.9e-08	-3.1	5.1	3.2e-07	0.67	0.93	0.05	FALSE
74	PL	RT1-T24-4	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	5	0.02	2.1e-02	-4.1	-5.2	2.1e-07	-0.66	0.32	0.27	FALSE
75	PL	NA	intron excision ratio	chr20:3379574:3379756	0.20	0.08	blup	2927	0.10	3.9e-08	-3.4	5.1	3.2e-07	0.66	0.92	0.06	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.