Best TWAS P=1.98e-10 · Best GWAS P=1.70e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | LOC102551788 | gene expression | LOC102551788 | 0.17 | 8 | 0.08 | 2.5e-09 | -5.28 | 1.27e-07 | 0.03 | TRUE |
Adipose | Trpc1 | gene expression | Trpc1 | 0.08 | 2010 | 0.05 | 3.2e-06 | 5.4 | 6.85e-08 | 0.78 | FALSE |
Adipose | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.04 | 2010 | 0.03 | 1.5e-04 | 5.39 | 7.16e-08 | 0.76 | FALSE |
BLA | Rasa2 | alternative polyA | NM_001105724.1 | 0.07 | 1879 | 0.03 | 9.7e-03 | 6.03 | 1.67e-09 | 0.65 | FALSE |
BLA | Rasa2 | alternative polyA | XM_039080892.1 | 0.08 | 1879 | 0.05 | 1.4e-03 | -5.98 | 2.17e-09 | 0.7 | FALSE |
BLA | Rasa2 | alternative polyA | NM_001105724.1 | 0.07 | 1879 | 0.02 | 1.8e-02 | 5.58 | 2.40e-08 | 0.56 | FALSE |
BLA | Rasa2 | alternative polyA | XM_039080892.1 | 0.08 | 1879 | 0.05 | 1.5e-03 | -5.42 | 5.92e-08 | 0.51 | TRUE |
BLA | Rasa2 | gene expression | Rasa2 | 0.11 | 1879 | 0.08 | 5.5e-05 | 5.89 | 3.89e-09 | 0.28 | FALSE |
BLA | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.07 | 1 | 0.06 | 6.9e-04 | -5.25 | 1.52e-07 | 0.08 | FALSE |
BLA | Atp1b3 | mRNA stability | Atp1b3 | 0.07 | 1 | 0.08 | 7.3e-05 | -5.47 | 4.43e-08 | 0.17 | FALSE |
Brain | Tfdp2 | alternative TSS | XM_039081179.1 | 0.03 | 1808 | 0.01 | 1.4e-02 | 5.38 | 7.63e-08 | 0.54 | FALSE |
Brain | Atp1b3 | gene expression | Atp1b3 | 0.09 | 4 | 0.04 | 1.7e-04 | 6.13 | 8.98e-10 | 0.58 | TRUE |
Brain | Chst2 | gene expression | Chst2 | 0.29 | 2201 | 0.17 | 1.3e-15 | 5.39 | 6.98e-08 | 0.07 | FALSE |
Brain | Tfdp2 | intron excision ratio | chr8_96795874_96804811 | 0.06 | 1808 | 0.04 | 2.4e-04 | -6.28 | 3.30e-10 | 0.25 | FALSE |
Brain | Trpc1 | intron excision ratio | chr8_96280099_96280911 | 0.13 | 2015 | 0.1 | 2.1e-09 | -5.81 | 6.40e-09 | 0.81 | FALSE |
Brain | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.18 | 261 | 0.17 | 2.6e-15 | -5.81 | 6.42e-09 | 0.76 | FALSE |
Brain | Atp1b3 | mRNA stability | Atp1b3 | 0.46 | 22 | 0.43 | 4.6e-43 | 5.48 | 4.23e-08 | 0.61 | FALSE |
Brain | Gk5 | mRNA stability | Gk5 | 0.06 | 6 | 0.03 | 6.8e-04 | 5.2 | 1.98e-07 | 0.65 | FALSE |
Brain | Pls1 | mRNA stability | Pls1 | 0.18 | 1938 | 0.14 | 5.0e-13 | -6.36 | 1.98e-10 | 0.77 | TRUE |
Brain | Trpc1 | mRNA stability | Trpc1 | 0.14 | 2015 | 0.12 | 7.9e-11 | 5.31 | 1.11e-07 | 0.72 | FALSE |
LHb | PCOLCE2 | gene expression | PCOLCE2 | 0.35 | 15 | 0.18 | 5.4e-05 | 5.2 | 2.00e-07 | 0.72 | FALSE |
Liver | PCOLCE2 | gene expression | PCOLCE2 | 0.09 | 1 | 0.08 | 2.4e-09 | -5.41 | 6.47e-08 | 0.9 | FALSE |
Liver | Atp1b3 | mRNA stability | Atp1b3 | 0.06 | 2 | 0.04 | 5.0e-05 | 5.34 | 9.50e-08 | 0.74 | TRUE |
NAcc | LOC102552777 | alternative polyA | XR_005488673.1 | 0.05 | 72 | 0.03 | 3.4e-04 | -5.87 | 4.41e-09 | 0.68 | TRUE |
NAcc | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.12 | 2015 | 0.11 | 2.0e-12 | 5.87 | 4.45e-09 | 0.79 | FALSE |
NAcc | Trpc1 | intron excision ratio | chr8_96280967_96282351 | 0.12 | 6 | 0.15 | 1.6e-16 | -5.5 | 3.77e-08 | 0.8 | FALSE |
NAcc | Atp1b3 | mRNA stability | Atp1b3 | 0.11 | 32 | 0.14 | 2.0e-15 | 5.39 | 6.95e-08 | 0.78 | FALSE |
OFC | U2surp | alternative polyA | XM_039082560.1 | 0.27 | 1 | 0.03 | 5.9e-02 | -5.19 | 2.06e-07 | 0.06 | TRUE |
OFC | Rnf7 | gene expression | Rnf7 | 0.46 | 22 | 0.11 | 1.2e-03 | 5.25 | 1.52e-07 | 0.49 | FALSE |
PL | Tfdp2 | alternative polyA | NM_001106847.2 | 0.16 | 39 | 0.19 | 8.8e-21 | 5.49 | 3.94e-08 | 0.63 | FALSE |
PL | Tfdp2 | alternative polyA | XM_017595585.2 | 0.16 | 28 | 0.18 | 1.2e-19 | -5.35 | 9.04e-08 | 0.65 | FALSE |
PL | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.04 | 1 | 0.04 | 2.0e-05 | -5.18 | 2.16e-07 | 0.3 | FALSE |
PL | Atp1b3 | mRNA stability | Atp1b3 | 0.13 | 1 | 0.18 | 1.3e-19 | -5.47 | 4.43e-08 | 0.77 | FALSE |
pVTA | Tfdp2 | isoform ratio | NM_001106847.2 | 0.07 | 1 | 0.05 | 2.7e-03 | 5.45 | 5.16e-08 | 0.05 | FALSE |
pVTA | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.14 | 1 | 0.1 | 3.0e-05 | -5.25 | 1.52e-07 | 0.17 | FALSE |
pVTA | Trpc1 | intron excision ratio | chr8_96280967_96282351 | 0.12 | 1 | 0.11 | 1.9e-05 | 5.21 | 1.91e-07 | 0.1 | FALSE |