Best TWAS P=3.77e-10 · Best GWAS P=2.35e-07 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Brain | Ext1 | mRNA stability | Ext1 | 0.05 | 1852 | 0.05 | 2.5e-05 | 5.22 | 1.82e-07 | 0.53 | TRUE |
Brain | Med30 | mRNA stability | Med30 | 0.05 | 1926 | 0.04 | 1.5e-04 | 6.26 | 3.77e-10 | 0.43 | TRUE |
Liver | Med30 | intron excision ratio | chr7_84012067_84015230 | 0.07 | 18 | 0.03 | 1.8e-04 | 6.04 | 1.52e-09 | 0.24 | TRUE |
NAcc | Med30 | intron excision ratio | chr7_84012067_84026109 | 0.06 | 1926 | 0.05 | 2.5e-06 | 5.36 | 8.14e-08 | 0.51 | FALSE |
OFC | Med30 | gene expression | Med30 | 0.23 | 65 | 0.09 | 3.1e-03 | 5.28 | 1.30e-07 | 0.33 | TRUE |
PL | Med30 | isoform ratio | NM_001130539.2 | 0.07 | 1926 | 0.06 | 9.9e-07 | 6.23 | 4.80e-10 | 0.49 | FALSE |
PL | Med30 | isoform ratio | NM_001399687.1 | 0.07 | 1926 | 0.05 | 1.2e-06 | -6.23 | 4.60e-10 | 0.49 | FALSE |
PL | Ext1 | mRNA stability | Ext1 | 0.44 | 71 | 0.45 | 2.8e-54 | 5.43 | 5.65e-08 | 0.68 | FALSE |