Best TWAS P = 1.92e-10 · Best GWAS P= 1.40e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Mlh1 | alternative polyA | NM_031053.2 | 0.02 | 1 | 0.01 | 9.2e-03 | 5.4 | 6.55e-08 | 0.06 | FALSE |
| Adipose | Mlh1 | alternative polyA | XM_063266207.1 | 0.02 | 1 | 0.01 | 8.7e-03 | -5.4 | 6.55e-08 | 0.06 | FALSE |
| Adipose | Mlh1 | alternative polyA | NM_031053.2 | 0.02 | 1 | 0.01 | 1.1e-02 | 5.4 | 6.55e-08 | 0.06 | FALSE |
| Adipose | Mlh1 | alternative polyA | XM_063266207.1 | 0.02 | 1 | 0.01 | 9.9e-03 | -5.4 | 6.55e-08 | 0.06 | FALSE |
| Adipose | Als2cl | gene expression | Als2cl | 0.24 | 2807 | 0.01 | 1.8e-02 | 5.62 | 1.86e-08 | 0.25 | FALSE |
| Adipose | Ccrl2 | gene expression | Ccrl2 | 0.03 | 1 | 0.01 | 8.4e-03 | -5.37 | 7.88e-08 | 0.03 | FALSE |
| Adipose | Mlh1 | isoform ratio | XM_063266207.1 | 0.03 | 1 | 0.01 | 9.7e-03 | -5.43 | 5.63e-08 | 0.06 | FALSE |
| BLA | Lrrfip2 | gene expression | Lrrfip2 | 0.07 | 1 | 0.07 | 2.0e-04 | -5.52 | 3.38e-08 | 0.17 | FALSE |
| Brain | Pth1r | alternative TSS | XM_006244002.4 | 0.08 | 163 | 0.05 | 4.0e-05 | -5.38 | 7.37e-08 | 0.41 | FALSE |
| Brain | Nbeal2 | gene expression | Nbeal2 | 0.61 | 2768 | 0.32 | 7.6e-31 | 5.21 | 1.85e-07 | 0.48 | FALSE |
| Brain | Ccdc12 | intron excision ratio | chr8_119547056_119561689 | 0.05 | 18 | 0.05 | 1.1e-05 | -5.27 | 1.39e-07 | 0.23 | FALSE |
| Brain | Mlh1 | intron excision ratio | chr8_120095325_120096995 | 0.02 | 1 | 0.03 | 8.1e-04 | 5.46 | 4.75e-08 | 0.05 | FALSE |
| Brain | Trank1 | intron excision ratio | chr8_120219593_120222781 | 0.06 | 1 | 0.06 | 1.4e-06 | -5.29 | 1.26e-07 | 0.39 | TRUE |
| Brain | Trank1 | intron excision ratio | chr8_120221634_120222781 | 0.02 | 1 | 0.02 | 6.2e-03 | 5.28 | 1.29e-07 | 0.03 | FALSE |
| IC | Kif9 | alternative polyA | NM_001192000.2 | 0.47 | 1 | 0.17 | 8.2e-08 | -5.27 | 1.38e-07 | 0.56 | FALSE |
| IC | Kif9 | alternative polyA | XM_006243994.5 | 0.52 | 1 | 0.18 | 5.7e-08 | 5.27 | 1.38e-07 | 0.58 | FALSE |
| IC | Epm2aip1 | gene expression | Epm2aip1 | 0.13 | 39 | 0.15 | 1.1e-06 | -5.26 | 1.43e-07 | 0.34 | FALSE |
| IC | Mlh1 | gene expression | Mlh1 | 0.48 | 27 | 0.51 | 1.8e-24 | 5.37 | 7.81e-08 | 0.31 | FALSE |
| IL | Dclk3 | gene expression | Dclk3 | 0.29 | 81 | 0.17 | 8.7e-05 | -5.25 | 1.53e-07 | 0.42 | FALSE |
| IL | Mlh1 | gene expression | Mlh1 | 0.55 | 678 | 0.44 | 8.5e-12 | 5.27 | 1.34e-07 | 0.4 | FALSE |
| IL | Mlh1 | mRNA stability | Mlh1 | 0.24 | 1 | 0.1 | 2.1e-03 | 5.4 | 6.55e-08 | 0.05 | FALSE |
| LHb | Ccdc12 | gene expression | Ccdc12 | 0.49 | 2646 | 0.16 | 1.1e-04 | -5.7 | 1.20e-08 | 0.34 | TRUE |
| Liver | Pth1r | alternative polyA | XM_039082024.2 | 0.06 | 31 | 0.05 | 2.4e-06 | -5.31 | 1.12e-07 | 0.37 | FALSE |
| Liver | Pth1r | alternative polyA | XM_006243999.4 | 0.06 | 25 | 0.05 | 1.7e-06 | -5.24 | 1.57e-07 | 0.37 | FALSE |
| Liver | Mlh1 | gene expression | Mlh1 | 0.55 | 930 | 0.6 | 2.0e-84 | 5.34 | 9.55e-08 | 0.48 | FALSE |
| Liver | Mst1 | isoform ratio | NM_024352.1 | 0.07 | 224 | 0.06 | 1.2e-07 | -6.37 | 1.92e-10 | 0 | TRUE |
| Liver | Pth1r | isoform ratio | NM_020073.2 | 0.07 | 12 | 0.07 | 3.9e-08 | 5.21 | 1.88e-07 | 0.4 | FALSE |
| Liver | Mlh1 | mRNA stability | Mlh1 | 0.02 | 7 | 0.02 | 1.7e-03 | 5.32 | 1.01e-07 | 0.4 | FALSE |
| Liver | Pth1r | mRNA stability | Pth1r | 0.05 | 1 | 0.03 | 6.2e-04 | 5.37 | 7.88e-08 | 0.15 | FALSE |
| Liver | Rtp3 | mRNA stability | Rtp3 | 0.03 | 1 | 0.02 | 5.4e-03 | -5.48 | 4.37e-08 | 0.05 | FALSE |
| NAcc | Lrrfip2 | gene expression | Lrrfip2 | 0.09 | 92 | 0.14 | 7.2e-21 | -5.23 | 1.67e-07 | 0.52 | FALSE |
| NAcc | Trank1 | gene expression | Trank1 | 0.02 | 1 | 0.03 | 1.1e-05 | 5.38 | 7.54e-08 | 0.42 | FALSE |
| NAcc | Lrrfip2 | intron excision ratio | chr8_119970179_119989208 | 0.04 | 9 | 0.05 | 3.8e-08 | 5.28 | 1.31e-07 | 0.34 | FALSE |
| NAcc | Trank1 | intron excision ratio | chr8_120219593_120221549 | 0.02 | 1 | 0.02 | 2.3e-04 | 5.29 | 1.25e-07 | 0.27 | FALSE |
| OFC | Epm2aip1 | gene expression | Epm2aip1 | 0.24 | 8 | 0.14 | 4.1e-04 | -5.36 | 8.51e-08 | 0.36 | FALSE |
| PL | Mlh1 | isoform ratio | XR_005487930.2 | 0.04 | 1 | 0.05 | 3.1e-06 | 5.38 | 7.54e-08 | 0.5 | FALSE |
| PL | Map4 | intron excision ratio | chr8_118869628_118893840 | 0.4 | 148 | 0.03 | 2.6e-04 | 5.42 | 5.86e-08 | 0.49 | FALSE |
| pVTA | Map4 | alternative TSS | NM_001419954.1 | 0.48 | 81 | 0.12 | 1.6e-09 | 5.21 | 1.86e-07 | 0.55 | FALSE |
| pVTA | LOC102552504 | intron excision ratio | chr8_119957747_119958158 | 0.03 | 1 | 0.03 | 1.1e-03 | 5.29 | 1.25e-07 | 0.04 | FALSE |
| pVTA | LOC102552504 | intron excision ratio | chr8_119957747_119958652 | 0.03 | 3 | 0.02 | 7.8e-03 | -5.27 | 1.38e-07 | 0.3 | FALSE |
| RMTg | Mlh1 | gene expression | Mlh1 | 0.33 | 1 | 0.29 | 2.5e-08 | 5.26 | 1.48e-07 | 0.21 | FALSE |