Best TWAS P=1.061056e-09 · Best GWAS P=1.003359e-08 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Crip2 | gene expression | ENSRNOG00000005041 | 0.12 | 0.08 | blup | 1471 | 0.10 | 1.4e-11 | -5.6 | 5.3 | 1.1e-07 | -0.96 | 0.52 | 0.48 | FALSE |
2 | Adipose | Tmem121 | gene expression | ENSRNOG00000005174 | 0.12 | 0.15 | blup | 1450 | 0.15 | 8.7e-17 | -5.6 | -5.4 | 5.1e-08 | 0.97 | 0.52 | 0.48 | FALSE |
3 | Adipose | Cdca4 | gene expression | ENSRNOG00000013898 | 0.11 | 0.04 | lasso | 3 | 0.04 | 3.0e-05 | -5.4 | 5.5 | 3.9e-08 | -0.97 | 0.54 | 0.46 | FALSE |
4 | Adipose | Jag2 | gene expression | ENSRNOG00000013927 | 0.27 | 0.28 | lasso | 25 | 0.29 | 5.9e-32 | -5.5 | -5.4 | 5.1e-08 | 0.98 | 0.52 | 0.48 | FALSE |
5 | Adipose | Nudt14 | gene expression | ENSRNOG00000014362 | 0.02 | 0.01 | top1 | 1 | 0.01 | 7.5e-02 | -5.6 | 5.6 | 2.3e-08 | -0.99 | 0.04 | 0.03 | FALSE |
6 | Adipose | Brf1 | gene expression | ENSRNOG00000014595 | 0.14 | 0.12 | blup | 1493 | 0.13 | 2.8e-14 | -5.6 | -5.7 | 1.2e-08 | 0.99 | 0.51 | 0.49 | FALSE |
7 | Adipose | Btbd6 | gene expression | ENSRNOG00000014693 | 0.20 | 0.06 | blup | 1457 | 0.08 | 6.9e-09 | -5.5 | -5.3 | 9.1e-08 | 0.97 | 0.52 | 0.48 | FALSE |
8 | Adipose | Pacs2 | gene expression | ENSRNOG00000014744 | 0.08 | 0.05 | blup | 1472 | 0.07 | 5.7e-08 | -5.6 | -5.7 | 1.4e-08 | 0.98 | 0.54 | 0.46 | FALSE |
9 | Adipose | Siva1 | gene expression | ENSRNOG00000028640 | 0.05 | 0.03 | blup | 1788 | 0.04 | 4.1e-05 | -5.5 | -5.6 | 2.0e-08 | 0.95 | 0.52 | 0.48 | FALSE |
10 | Adipose | Cep170b | gene expression | ENSRNOG00000033688 | 0.09 | 0.05 | top1 | 1 | 0.05 | 3.5e-06 | -5.5 | 5.5 | 3.5e-08 | -0.94 | 0.49 | 0.36 | FALSE |
11 | Adipose | NA | gene expression | ENSRNOG00000065195 | 0.19 | 0.13 | lasso | 6 | 0.14 | 5.9e-15 | -5.5 | -5.5 | 3.5e-08 | 0.99 | 0.49 | 0.51 | FALSE |
12 | Adipose | Tedc1 | gene expression | ENSRNOG00000070355 | 0.41 | 0.31 | top1 | 1 | 0.31 | 1.4e-35 | -5.6 | -5.6 | 2.1e-08 | 0.98 | 0.54 | 0.46 | FALSE |
13 | Adipose | NA | intron excision ratio | chr6:131557901:131564166 | 0.03 | 0.01 | blup | 1782 | 0.01 | 2.3e-02 | -5.3 | -5.3 | 1.3e-07 | 0.88 | 0.68 | 0.26 | FALSE |
14 | Adipose | NA | intron excision ratio | chr6:131565235:131566095 | 0.55 | 0.51 | blup | 1782 | 0.52 | 6.2e-68 | -5.0 | 5.3 | 1.5e-07 | -0.87 | 0.95 | 0.05 | FALSE |
15 | Adipose | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.33 | 0.12 | blup | 1469 | 0.13 | 3.7e-14 | -5.6 | -5.6 | 2.2e-08 | 0.98 | 0.51 | 0.49 | FALSE |
16 | Adipose | Brf1 | intron excision ratio | chr6:132061560:132064872 | 0.09 | 0.04 | blup | 1493 | 0.05 | 3.0e-06 | -5.3 | 5.7 | 1.6e-08 | -0.97 | 0.60 | 0.40 | FALSE |
17 | Adipose | Pacs2 | intron excision ratio | chr6:132139927:132142757 | 0.30 | 0.30 | top1 | 1 | 0.30 | 3.7e-34 | -5.6 | 5.6 | 2.6e-08 | -0.99 | 0.60 | 0.40 | FALSE |
18 | Adipose | NA | mRNA stability | ENSRNOG00000013097 | 0.43 | 0.41 | blup | 1782 | 0.42 | 9.9e-50 | -4.9 | -5.2 | 2.1e-07 | 0.85 | 0.95 | 0.05 | FALSE |
19 | Adipose | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.18 | 0.24 | lasso | 11 | 0.24 | 2.0e-26 | -5.6 | -5.6 | 2.1e-08 | 1.00 | 0.52 | 0.48 | FALSE |
20 | Adipose | Crip1 | mRNA stability | ENSRNOG00000027990 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.5e-04 | -5.4 | -5.4 | 6.3e-08 | 0.98 | 0.13 | 0.05 | FALSE |
21 | Adipose | Pld4 | mRNA stability | ENSRNOG00000028566 | 0.11 | 0.05 | lasso | 10 | 0.05 | 4.1e-06 | -5.5 | -5.5 | 3.6e-08 | 0.99 | 0.45 | 0.55 | FALSE |
22 | Adipose | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.04 | 0.03 | enet | 8 | 0.03 | 4.3e-04 | -5.5 | -5.5 | 3.2e-08 | 0.99 | 0.45 | 0.50 | FALSE |
23 | Adipose | NA | mRNA stability | ENSRNOG00000065195 | 0.29 | 0.24 | blup | 1769 | 0.26 | 3.4e-28 | -5.6 | 5.4 | 5.4e-08 | -0.98 | 0.51 | 0.49 | FALSE |
24 | BLA | Gpr132 | gene expression | ENSRNOG00000013914 | 0.06 | 0.05 | top1 | 1 | 0.05 | 1.2e-03 | 5.2 | -5.2 | 1.5e-07 | 0.98 | 0.07 | 0.04 | FALSE |
25 | BLA | Jag2 | gene expression | ENSRNOG00000013927 | 0.24 | 0.20 | top1 | 1 | 0.20 | 9.4e-11 | -5.3 | -5.3 | 9.1e-08 | 0.99 | 0.83 | 0.17 | FALSE |
26 | BLA | Nudt14 | gene expression | ENSRNOG00000014362 | 0.20 | 0.16 | blup | 1447 | 0.17 | 1.3e-09 | 5.2 | -5.7 | 1.4e-08 | 0.99 | 0.54 | 0.46 | FALSE |
27 | BLA | Brf1 | gene expression | ENSRNOG00000014595 | 0.19 | 0.20 | blup | 1494 | 0.22 | 6.5e-12 | -5.6 | 5.7 | 1.2e-08 | -0.98 | 0.54 | 0.46 | FALSE |
28 | BLA | Btbd6 | gene expression | ENSRNOG00000014693 | 0.06 | 0.04 | top1 | 1 | 0.04 | 2.8e-03 | 5.6 | -5.6 | 2.3e-08 | 0.99 | 0.06 | 0.04 | FALSE |
29 | BLA | Pacs2 | gene expression | ENSRNOG00000014744 | 0.11 | 0.11 | top1 | 1 | 0.11 | 2.6e-06 | -5.7 | -5.7 | 1.4e-08 | 0.99 | 0.31 | 0.37 | FALSE |
30 | BLA | Cep170b | gene expression | ENSRNOG00000033688 | 0.19 | 0.09 | lasso | 15 | 0.11 | 1.6e-06 | -5.3 | -5.9 | 3.2e-09 | 0.98 | 0.44 | 0.56 | FALSE |
31 | BLA | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.32 | 0.18 | blup | 1470 | 0.20 | 5.4e-11 | -5.6 | 5.6 | 1.9e-08 | -0.99 | 0.53 | 0.47 | FALSE |
32 | BLA | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.49 | 0.22 | blup | 1470 | 0.24 | 3.8e-13 | 5.3 | -5.6 | 1.9e-08 | 0.99 | 0.53 | 0.47 | FALSE |
33 | BLA | Pacs2 | intron excision ratio | chr6:132142847:132143116 | 0.06 | 0.00 | blup | 1473 | 0.02 | 1.8e-02 | -5.7 | 5.6 | 2.7e-08 | -0.98 | 0.44 | 0.37 | FALSE |
34 | BLA | Pacs2 | intron excision ratio | chr6:132143190:132143659 | 0.05 | 0.00 | blup | 1473 | 0.01 | 5.1e-02 | -5.7 | -5.6 | 2.6e-08 | 0.98 | 0.39 | 0.33 | FALSE |
35 | BLA | Cep170b | intron excision ratio | chr6:131799072:131800354 | 0.15 | 0.09 | blup | 1784 | 0.10 | 5.0e-06 | -5.3 | -5.7 | 1.3e-08 | 0.98 | 0.46 | 0.54 | FALSE |
36 | BLA | Cep170b | intron excision ratio | chr6:131799072:131800459 | 0.14 | 0.08 | blup | 1784 | 0.09 | 1.9e-05 | -5.3 | 5.7 | 1.2e-08 | -0.98 | 0.46 | 0.54 | FALSE |
37 | BLA | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.21 | 0.22 | enet | 27 | 0.22 | 5.8e-12 | -5.6 | -5.5 | 4.1e-08 | 0.95 | 0.53 | 0.47 | FALSE |
38 | BLA | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.09 | 0.02 | blup | 1470 | 0.04 | 2.6e-03 | -5.7 | -5.6 | 1.9e-08 | 0.99 | 0.52 | 0.45 | FALSE |
39 | BLA | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.19 | 0.20 | blup | 1494 | 0.21 | 1.6e-11 | -5.5 | 5.7 | 1.3e-08 | -0.99 | 0.53 | 0.47 | FALSE |
40 | BLA | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.15 | 0.09 | top1 | 1 | 0.09 | 1.2e-05 | -5.7 | -5.7 | 1.2e-08 | 0.95 | 0.16 | 0.28 | FALSE |
41 | Brain | Crip2 | gene expression | ENSRNOG00000005041 | 0.05 | 0.06 | enet | 9 | 0.07 | 1.1e-06 | -5.6 | 5.6 | 2.2e-08 | -0.86 | 0.54 | 0.46 | FALSE |
42 | Brain | Cdca4 | gene expression | ENSRNOG00000013898 | 0.02 | 0.02 | enet | 5 | 0.02 | 2.7e-03 | -5.7 | 6.1 | 1.1e-09 | -0.94 | 0.45 | 0.37 | TRUE |
43 | Brain | Gpr132 | gene expression | ENSRNOG00000013914 | 0.04 | 0.03 | enet | 70 | 0.04 | 2.7e-04 | -5.6 | -5.7 | 1.3e-08 | 0.98 | 0.55 | 0.44 | FALSE |
44 | Brain | Jag2 | gene expression | ENSRNOG00000013927 | 0.18 | 0.26 | top1 | 1 | 0.26 | 1.0e-23 | 5.7 | -5.7 | 1.4e-08 | 0.99 | 0.44 | 0.56 | FALSE |
45 | Brain | Nudt14 | gene expression | ENSRNOG00000014362 | 0.26 | 0.21 | enet | 24 | 0.22 | 1.0e-19 | -5.3 | -5.4 | 6.6e-08 | 0.76 | 0.50 | 0.50 | FALSE |
46 | Brain | Brf1 | gene expression | ENSRNOG00000014595 | 0.28 | 0.19 | enet | 16 | 0.20 | 3.6e-18 | -5.6 | 5.6 | 1.8e-08 | -0.98 | 0.51 | 0.49 | FALSE |
47 | Brain | Pacs2 | gene expression | ENSRNOG00000014744 | 0.03 | 0.02 | lasso | 3 | 0.03 | 1.8e-03 | -5.3 | -5.4 | 5.9e-08 | 0.96 | 0.52 | 0.45 | FALSE |
48 | Brain | Siva1 | gene expression | ENSRNOG00000028640 | 0.12 | 0.07 | lasso | 8 | 0.08 | 8.9e-08 | -4.8 | -5.3 | 1.0e-07 | 0.87 | 0.86 | 0.14 | FALSE |
49 | Brain | Cep170b | gene expression | ENSRNOG00000033688 | 0.38 | 0.32 | top1 | 1 | 0.32 | 7.5e-30 | -5.4 | -5.4 | 7.3e-08 | 0.94 | 0.74 | 0.26 | FALSE |
50 | Brain | NA | gene expression | ENSRNOG00000067921 | 0.05 | 0.06 | enet | 4 | 0.06 | 2.1e-06 | 5.4 | -5.7 | 1.5e-08 | 0.96 | 0.54 | 0.46 | FALSE |
51 | Brain | Tedc1 | gene expression | ENSRNOG00000070355 | 0.03 | 0.03 | top1 | 1 | 0.03 | 1.2e-03 | -5.5 | -5.5 | 3.2e-08 | 0.98 | 0.06 | 0.04 | FALSE |
52 | Brain | Nudt14 | isoform ratio | ENSRNOT00000019550 | 0.03 | 0.04 | top1 | 1 | 0.04 | 7.3e-05 | 5.3 | -5.3 | 1.1e-07 | 0.99 | 0.12 | 0.04 | FALSE |
53 | Brain | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.33 | 0.40 | top1 | 1 | 0.40 | 9.5e-40 | -5.5 | 5.5 | 3.5e-08 | -0.99 | 0.66 | 0.34 | FALSE |
54 | Brain | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.37 | 0.49 | top1 | 1 | 0.49 | 2.6e-51 | -5.7 | -5.7 | 1.4e-08 | 0.99 | 0.45 | 0.55 | FALSE |
55 | Brain | Brf1 | intron excision ratio | chr6:132044831:132046119 | 0.03 | 0.00 | enet | 14 | 0.00 | 1.0e-01 | -5.3 | -5.7 | 1.4e-08 | 0.92 | 0.46 | 0.30 | FALSE |
56 | Brain | Pacs2 | intron excision ratio | chr6:132134514:132135106 | 0.02 | 0.02 | top1 | 1 | 0.02 | 1.0e-02 | -5.6 | 5.6 | 1.6e-08 | -0.99 | 0.05 | 0.04 | FALSE |
57 | Brain | Pacs2 | intron excision ratio | chr6:132134538:132135106 | 0.03 | 0.02 | top1 | 1 | 0.02 | 8.8e-03 | -5.6 | -5.6 | 1.7e-08 | 0.99 | 0.05 | 0.04 | FALSE |
58 | Brain | Pacs2 | intron excision ratio | chr6:132142847:132143116 | 0.11 | 0.15 | top1 | 1 | 0.15 | 4.9e-14 | -5.5 | 5.5 | 3.3e-08 | -0.99 | 0.64 | 0.36 | FALSE |
59 | Brain | Pacs2 | intron excision ratio | chr6:132143190:132143659 | 0.10 | 0.14 | top1 | 1 | 0.14 | 3.9e-13 | -5.5 | -5.5 | 3.3e-08 | 0.99 | 0.64 | 0.36 | FALSE |
60 | Brain | Pacs2 | intron excision ratio | chr6:132146963:132147839 | 0.02 | 0.01 | top1 | 1 | 0.01 | 2.6e-02 | -5.3 | -5.3 | 1.1e-07 | 0.99 | 0.05 | 0.03 | FALSE |
61 | Brain | Pacs2 | intron excision ratio | chr6:132146963:132150591 | 0.03 | 0.03 | top1 | 1 | 0.03 | 1.2e-03 | -5.3 | 5.3 | 1.1e-07 | -0.99 | 0.11 | 0.04 | FALSE |
62 | Brain | Pacs2 | intron excision ratio | chr6:132147871:132150591 | 0.03 | 0.03 | blup | 1473 | 0.03 | 1.8e-03 | -5.7 | -5.7 | 1.6e-08 | 0.99 | 0.52 | 0.45 | FALSE |
63 | Brain | Pld4 | intron excision ratio | chr6:131818984:131820582 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.0e-03 | -5.6 | -5.6 | 2.6e-08 | 0.94 | 0.10 | 0.07 | FALSE |
64 | Brain | Cep170b | intron excision ratio | chr6:131799072:131800354 | 0.35 | 0.21 | top1 | 1 | 0.21 | 4.1e-19 | -5.3 | -5.3 | 9.1e-08 | 0.95 | 0.78 | 0.22 | FALSE |
65 | Brain | Cep170b | intron excision ratio | chr6:131799072:131800459 | 0.32 | 0.19 | top1 | 1 | 0.19 | 1.7e-17 | -5.3 | 5.3 | 9.1e-08 | -0.95 | 0.78 | 0.22 | FALSE |
66 | Brain | Tedc1 | intron excision ratio | chr6:132237879:132238079 | 0.03 | 0.00 | enet | 12 | 0.01 | 8.7e-02 | -5.5 | 5.5 | 4.0e-08 | -0.93 | 0.54 | 0.39 | FALSE |
67 | Brain | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.36 | 0.34 | top1 | 1 | 0.34 | 9.1e-33 | -5.5 | -5.5 | 3.7e-08 | 0.98 | 0.67 | 0.33 | FALSE |
68 | Brain | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.11 | 0.15 | top1 | 1 | 0.15 | 3.4e-14 | -5.3 | -5.3 | 9.1e-08 | 0.99 | 0.83 | 0.17 | FALSE |
69 | Brain | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.31 | 0.25 | enet | 193 | 0.26 | 2.3e-24 | -5.6 | 5.6 | 2.4e-08 | -0.96 | 0.51 | 0.49 | FALSE |
70 | Brain | Pacs2 | mRNA stability | ENSRNOG00000014744 | 0.16 | 0.17 | top1 | 1 | 0.17 | 9.3e-16 | 5.5 | 5.5 | 3.1e-08 | -0.99 | 0.64 | 0.36 | FALSE |
71 | Brain | Pld4 | mRNA stability | ENSRNOG00000028566 | 0.16 | 0.07 | top1 | 1 | 0.07 | 8.5e-07 | 5.7 | -5.7 | 1.4e-08 | 0.96 | 0.35 | 0.58 | FALSE |
72 | Brain | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.24 | 0.25 | enet | 25 | 0.26 | 7.5e-24 | -5.7 | -5.7 | 9.3e-09 | 0.96 | 0.43 | 0.57 | FALSE |
73 | Eye | Clba1 | intron excision ratio | chr6:131885909:131888095 | 0.37 | 0.19 | enet | 7 | 0.29 | 2.3e-05 | -4.9 | 5.4 | 8.7e-08 | -0.87 | 0.61 | 0.30 | FALSE |
74 | Eye | Clba1 | intron excision ratio | chr6:131886607:131888095 | 0.38 | 0.24 | enet | 7 | 0.31 | 9.3e-06 | -5.4 | -5.4 | 7.0e-08 | 0.88 | 0.60 | 0.34 | FALSE |
75 | Eye | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.29 | 0.20 | lasso | 14 | 0.21 | 3.3e-04 | -5.6 | 5.7 | 1.3e-08 | -0.97 | 0.43 | 0.36 | FALSE |
76 | Eye | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.31 | 0.17 | top1 | 1 | 0.17 | 1.2e-03 | -5.6 | -5.6 | 2.5e-08 | 0.99 | 0.09 | 0.06 | FALSE |
77 | Eye | NA | mRNA stability | ENSRNOG00000065195 | 0.32 | 0.17 | top1 | 1 | 0.17 | 1.3e-03 | -5.5 | 5.5 | 3.6e-08 | -0.97 | 0.10 | 0.06 | FALSE |
78 | IL | Brf1 | gene expression | ENSRNOG00000014595 | 0.20 | 0.20 | top1 | 1 | 0.20 | 1.6e-05 | 5.7 | 5.7 | 1.5e-08 | -0.99 | 0.10 | 0.08 | FALSE |
79 | IL | Cep170b | gene expression | ENSRNOG00000033688 | 0.35 | 0.27 | top1 | 1 | 0.27 | 3.0e-07 | -5.6 | -5.6 | 1.9e-08 | 0.93 | 0.20 | 0.23 | FALSE |
80 | IL | Tedc1 | gene expression | ENSRNOG00000070355 | 0.34 | 0.23 | blup | 1452 | 0.25 | 1.2e-06 | -5.6 | -5.5 | 3.0e-08 | 0.98 | 0.54 | 0.45 | FALSE |
81 | IL | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.25 | 0.24 | top1 | 1 | 0.24 | 1.7e-06 | -5.5 | 5.5 | 3.5e-08 | -0.99 | 0.16 | 0.09 | FALSE |
82 | IL | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.31 | 0.21 | blup | 1460 | 0.29 | 1.3e-07 | -5.6 | -5.5 | 4.1e-08 | 0.98 | 0.53 | 0.47 | FALSE |
83 | IL | Jag2 | intron excision ratio | chr6:131985970:131986156 | 0.12 | 0.09 | blup | 1460 | 0.10 | 2.5e-03 | -5.7 | 5.4 | 7.2e-08 | -0.97 | 0.39 | 0.33 | FALSE |
84 | IL | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.24 | 0.22 | top1 | 1 | 0.22 | 4.9e-06 | -5.6 | -5.6 | 1.8e-08 | 0.98 | 0.11 | 0.09 | FALSE |
85 | IL | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.20 | 0.23 | top1 | 1 | 0.23 | 2.4e-06 | -5.6 | -5.6 | 2.6e-08 | 0.99 | 0.12 | 0.09 | FALSE |
86 | IL | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.16 | 0.12 | top1 | 1 | 0.12 | 1.0e-03 | -5.6 | 5.6 | 2.1e-08 | -0.99 | 0.09 | 0.06 | FALSE |
87 | IL | Pacs2 | mRNA stability | ENSRNOG00000014744 | 0.13 | 0.14 | top1 | 1 | 0.14 | 3.0e-04 | -5.6 | 5.6 | 2.1e-08 | -0.99 | 0.08 | 0.06 | FALSE |
88 | IL | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.28 | 0.12 | top1 | 1 | 0.12 | 7.9e-04 | 5.7 | -5.7 | 1.4e-08 | 0.95 | 0.10 | 0.06 | FALSE |
89 | LHb | Crip2 | gene expression | ENSRNOG00000005041 | 0.18 | 0.08 | blup | 1462 | 0.18 | 5.2e-05 | -5.7 | 5.3 | 1.3e-07 | -0.95 | 0.54 | 0.39 | FALSE |
90 | LHb | Jag2 | gene expression | ENSRNOG00000013927 | 0.20 | 0.14 | blup | 1460 | 0.15 | 2.0e-04 | -5.6 | -5.7 | 1.5e-08 | 0.99 | 0.53 | 0.43 | FALSE |
91 | LHb | Nudt14 | gene expression | ENSRNOG00000014362 | 0.39 | 0.21 | enet | 8 | 0.26 | 7.7e-07 | -5.6 | -5.6 | 1.7e-08 | 1.00 | 0.54 | 0.46 | FALSE |
92 | LHb | Siva1 | gene expression | ENSRNOG00000028640 | 0.13 | 0.04 | enet | 35 | 0.11 | 1.4e-03 | -5.6 | 5.7 | 1.4e-08 | -1.00 | 0.40 | 0.36 | FALSE |
93 | LHb | NA | gene expression | ENSRNOG00000065195 | 0.33 | 0.21 | top1 | 1 | 0.21 | 1.2e-05 | -5.6 | -5.6 | 1.8e-08 | 0.97 | 0.12 | 0.09 | FALSE |
94 | LHb | Zfyve21 | intron excision ratio | chr6:130888119:130889743 | 0.14 | 0.11 | enet | 15 | 0.19 | 2.3e-05 | -4.0 | -5.3 | 1.0e-07 | 0.78 | 0.39 | 0.37 | FALSE |
95 | LHb | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.40 | 0.15 | blup | 1460 | 0.19 | 3.5e-05 | 5.5 | 5.5 | 3.7e-08 | -0.98 | 0.52 | 0.45 | FALSE |
96 | LHb | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.35 | 0.25 | lasso | 2 | 0.26 | 6.8e-07 | -5.6 | -5.6 | 1.9e-08 | 1.00 | 0.53 | 0.46 | FALSE |
97 | LHb | Pacs2 | mRNA stability | ENSRNOG00000014744 | 0.21 | 0.19 | top1 | 1 | 0.19 | 3.0e-05 | -5.5 | 5.5 | 4.1e-08 | -0.99 | 0.10 | 0.06 | FALSE |
98 | Liver | Crip2 | gene expression | ENSRNOG00000005041 | 0.09 | 0.05 | blup | 1471 | 0.06 | 3.8e-07 | 5.3 | 5.6 | 1.8e-08 | -0.98 | 0.52 | 0.48 | FALSE |
99 | Liver | Nudt14 | gene expression | ENSRNOG00000014362 | 0.06 | 0.03 | blup | 1446 | 0.04 | 2.8e-05 | -5.5 | -5.7 | 1.2e-08 | 0.98 | 0.54 | 0.46 | FALSE |
100 | Liver | Brf1 | gene expression | ENSRNOG00000014595 | 0.16 | 0.16 | blup | 1493 | 0.17 | 4.2e-18 | -5.6 | -5.7 | 1.2e-08 | 0.98 | 0.53 | 0.47 | FALSE |
101 | Liver | Btbd6 | gene expression | ENSRNOG00000014693 | 0.05 | 0.03 | blup | 1457 | 0.03 | 2.5e-04 | -5.6 | -5.6 | 1.9e-08 | 0.99 | 0.54 | 0.46 | FALSE |
102 | Liver | Tex22 | gene expression | ENSRNOG00000028158 | 0.05 | 0.02 | top1 | 1 | 0.02 | 1.5e-03 | 5.3 | 5.3 | 9.8e-08 | -0.99 | 0.05 | 0.03 | FALSE |
103 | Liver | Pld4 | gene expression | ENSRNOG00000028566 | 0.14 | 0.11 | top1 | 1 | 0.11 | 2.6e-12 | -5.3 | -5.3 | 1.1e-07 | 0.95 | 0.82 | 0.18 | FALSE |
104 | Liver | Siva1 | gene expression | ENSRNOG00000028640 | 0.06 | 0.04 | blup | 1788 | 0.05 | 3.2e-06 | -4.9 | -5.4 | 5.4e-08 | 0.91 | 0.75 | 0.25 | FALSE |
105 | Liver | Inf2 | gene expression | ENSRNOG00000028650 | 0.12 | 0.11 | blup | 1808 | 0.14 | 8.2e-15 | -5.2 | 5.5 | 2.9e-08 | -0.93 | 0.68 | 0.32 | FALSE |
106 | Liver | Cep170b | gene expression | ENSRNOG00000033688 | 0.33 | 0.25 | lasso | 4 | 0.26 | 8.3e-29 | -5.2 | 5.4 | 5.3e-08 | -0.99 | 0.42 | 0.58 | FALSE |
107 | Liver | NA | gene expression | ENSRNOG00000065195 | 0.13 | 0.12 | lasso | 13 | 0.12 | 3.2e-13 | -5.4 | -5.4 | 6.0e-08 | 0.99 | 0.50 | 0.50 | FALSE |
108 | Liver | Tedc1 | gene expression | ENSRNOG00000070355 | 0.03 | 0.01 | blup | 1461 | 0.01 | 8.3e-03 | -3.2 | -5.4 | 5.1e-08 | 0.97 | 0.51 | 0.41 | FALSE |
109 | Liver | Pld4 | isoform ratio | ENSRNOT00000029017 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.2e-04 | -5.6 | 5.6 | 2.7e-08 | -0.95 | 0.16 | 0.13 | FALSE |
110 | Liver | Brf1 | intron excision ratio | chr6:132046382:132050296 | 0.06 | 0.06 | blup | 1493 | 0.06 | 8.2e-07 | -5.6 | 5.6 | 1.7e-08 | -0.99 | 0.54 | 0.46 | FALSE |
111 | Liver | Brf1 | intron excision ratio | chr6:132046408:132050296 | 0.06 | 0.05 | blup | 1493 | 0.06 | 7.0e-07 | -5.6 | -5.6 | 1.7e-08 | 0.99 | 0.54 | 0.46 | FALSE |
112 | Liver | Brf1 | intron excision ratio | chr6:132061560:132064872 | 0.05 | 0.04 | blup | 1493 | 0.05 | 4.9e-06 | -5.4 | 5.7 | 1.2e-08 | -0.99 | 0.53 | 0.47 | FALSE |
113 | Liver | Brf1 | intron excision ratio | chr6:132061560:132068713 | 0.09 | 0.08 | blup | 1493 | 0.09 | 1.0e-09 | -5.2 | -5.7 | 1.5e-08 | 0.97 | 0.54 | 0.46 | FALSE |
114 | Liver | Pacs2 | intron excision ratio | chr6:132139927:132142757 | 0.07 | 0.06 | enet | 13 | 0.06 | 2.2e-07 | 5.5 | 5.5 | 3.0e-08 | -0.95 | 0.54 | 0.46 | FALSE |
115 | NAcc | Crip2 | gene expression | ENSRNOG00000005041 | 0.12 | 0.13 | top1 | 1 | 0.13 | 8.8e-04 | -5.6 | 5.6 | 1.9e-08 | -0.98 | 0.08 | 0.06 | FALSE |
116 | NAcc | Tmem121 | gene expression | ENSRNOG00000005174 | 0.15 | 0.11 | blup | 1441 | 0.13 | 8.2e-04 | -5.7 | -5.5 | 3.4e-08 | 0.98 | 0.50 | 0.39 | FALSE |
117 | NAcc | Pacs2 | gene expression | ENSRNOG00000014744 | 0.23 | 0.23 | blup | 1462 | 0.23 | 5.7e-06 | 5.3 | -5.7 | 1.6e-08 | 0.99 | 0.54 | 0.45 | FALSE |
118 | NAcc | Inf2 | gene expression | ENSRNOG00000028650 | 0.33 | 0.23 | blup | 1799 | 0.29 | 2.9e-07 | -4.8 | 5.5 | 4.7e-08 | -0.91 | 0.73 | 0.26 | FALSE |
119 | NAcc | Cep170b | gene expression | ENSRNOG00000033688 | 0.14 | 0.11 | top1 | 1 | 0.11 | 1.7e-03 | -5.5 | -5.5 | 4.2e-08 | 0.94 | 0.09 | 0.05 | FALSE |
120 | NAcc | Tedc1 | gene expression | ENSRNOG00000070355 | 0.37 | 0.34 | blup | 1452 | 0.38 | 1.6e-09 | -5.6 | -5.7 | 1.4e-08 | 0.99 | 0.53 | 0.47 | FALSE |
121 | NAcc | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.36 | 0.42 | top1 | 1 | 0.42 | 1.5e-10 | 5.5 | 5.5 | 3.4e-08 | -0.99 | 0.60 | 0.32 | FALSE |
122 | NAcc | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.41 | 0.49 | top1 | 1 | 0.49 | 1.5e-12 | 5.7 | -5.7 | 1.2e-08 | 0.99 | 0.40 | 0.58 | FALSE |
123 | NAcc | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.16 | 0.10 | enet | 80 | 0.12 | 1.2e-03 | -5.5 | -5.3 | 1.2e-07 | 0.97 | 0.49 | 0.37 | FALSE |
124 | NAcc | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.13 | 0.13 | top1 | 1 | 0.13 | 9.9e-04 | -5.5 | 5.5 | 3.7e-08 | -0.99 | 0.08 | 0.05 | FALSE |
125 | NAcc | Pacs2 | mRNA stability | ENSRNOG00000014744 | 0.17 | 0.15 | top1 | 1 | 0.15 | 3.2e-04 | -5.6 | 5.6 | 2.3e-08 | -0.99 | 0.09 | 0.06 | FALSE |
126 | NAcc2 | Nudt14 | alternative polyA | ENSRNOT00000109846 | 0.05 | 0.01 | top1 | 1 | 0.01 | 5.3e-02 | -5.7 | 5.7 | 1.2e-08 | -0.99 | 0.06 | 0.04 | FALSE |
127 | NAcc2 | Jag2 | gene expression | ENSRNOG00000013927 | 0.20 | 0.08 | lasso | 16 | 0.12 | 5.8e-07 | -5.6 | -5.6 | 2.5e-08 | 0.95 | 0.56 | 0.44 | FALSE |
128 | NAcc2 | Nudt14 | gene expression | ENSRNOG00000014362 | 0.14 | 0.15 | top1 | 1 | 0.15 | 2.3e-08 | -5.6 | -5.6 | 2.6e-08 | 0.99 | 0.58 | 0.39 | FALSE |
129 | NAcc2 | Cep170b | gene expression | ENSRNOG00000033688 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.3e-03 | -5.5 | -5.5 | 3.5e-08 | 0.94 | 0.07 | 0.04 | FALSE |
130 | NAcc2 | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.28 | 0.16 | top1 | 1 | 0.16 | 4.6e-09 | 5.4 | -5.4 | 6.9e-08 | 0.99 | 0.77 | 0.21 | FALSE |
131 | NAcc2 | Pacs2 | intron excision ratio | chr6:132142847:132143116 | 0.06 | 0.02 | blup | 1473 | 0.02 | 2.6e-02 | -5.6 | 5.7 | 1.4e-08 | -0.99 | 0.48 | 0.41 | FALSE |
132 | NAcc2 | Pacs2 | intron excision ratio | chr6:132143190:132143659 | 0.05 | 0.01 | blup | 1473 | 0.01 | 5.7e-02 | -5.6 | -5.7 | 1.4e-08 | 0.99 | 0.39 | 0.34 | FALSE |
133 | NAcc2 | Cep170b | intron excision ratio | chr6:131799072:131800354 | 0.14 | 0.07 | blup | 1784 | 0.07 | 1.5e-04 | -5.4 | -5.7 | 1.3e-08 | 0.98 | 0.45 | 0.54 | FALSE |
134 | NAcc2 | Cep170b | intron excision ratio | chr6:131799072:131800459 | 0.14 | 0.06 | blup | 1784 | 0.06 | 2.4e-04 | -5.4 | 5.7 | 1.3e-08 | -0.99 | 0.44 | 0.54 | FALSE |
135 | NAcc2 | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.10 | 0.05 | top1 | 1 | 0.05 | 9.1e-04 | 5.3 | 5.3 | 1.1e-07 | -0.99 | 0.07 | 0.04 | FALSE |
136 | OFC | Tmem179 | gene expression | ENSRNOG00000013128 | 0.18 | 0.06 | blup | 1790 | 0.09 | 3.1e-03 | -4.9 | -5.1 | 2.8e-07 | 0.85 | 0.66 | 0.20 | FALSE |
137 | OFC | Brf1 | gene expression | ENSRNOG00000014595 | 0.25 | 0.08 | blup | 1483 | 0.11 | 1.4e-03 | -5.6 | 5.5 | 3.0e-08 | -0.98 | 0.53 | 0.42 | FALSE |
138 | OFC | Pacs2 | gene expression | ENSRNOG00000014744 | 0.55 | 0.14 | blup | 1462 | 0.16 | 1.1e-04 | -5.6 | -5.3 | 1.3e-07 | 0.95 | 0.51 | 0.45 | FALSE |
139 | OFC | Cep170b | gene expression | ENSRNOG00000033688 | 0.27 | 0.15 | lasso | 3 | 0.18 | 3.7e-05 | -4.9 | -5.2 | 2.2e-07 | 0.84 | 0.69 | 0.28 | FALSE |
140 | OFC | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.45 | 0.23 | blup | 1460 | 0.24 | 2.2e-06 | -5.5 | 5.2 | 2.0e-07 | -0.94 | 0.54 | 0.45 | FALSE |
141 | OFC | Pacs2 | intron excision ratio | chr6:132143190:132143659 | 0.11 | 0.19 | top1 | 1 | 0.19 | 3.5e-05 | -5.7 | -5.7 | 1.5e-08 | 0.99 | 0.08 | 0.05 | FALSE |
142 | OFC | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.11 | 0.03 | blup | 1441 | 0.06 | 1.2e-02 | -3.3 | -5.5 | 3.8e-08 | 0.98 | 0.35 | 0.28 | FALSE |
143 | OFC | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.15 | 0.09 | lasso | 3 | 0.09 | 3.2e-03 | -5.6 | -5.6 | 1.6e-08 | 1.00 | 0.43 | 0.35 | FALSE |
144 | OFC | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.30 | 0.13 | enet | 6 | 0.16 | 1.4e-04 | -5.6 | -5.6 | 1.6e-08 | 1.00 | 0.45 | 0.51 | FALSE |
145 | PL | Jag2 | gene expression | ENSRNOG00000013927 | 0.15 | 0.05 | enet | 6 | 0.06 | 1.9e-02 | -5.6 | -5.7 | 1.5e-08 | 1.00 | 0.38 | 0.31 | FALSE |
146 | PL | Brf1 | gene expression | ENSRNOG00000014595 | 0.23 | 0.24 | top1 | 1 | 0.24 | 2.5e-06 | -5.6 | 5.6 | 1.8e-08 | -0.99 | 0.11 | 0.09 | FALSE |
147 | PL | Tedc1 | gene expression | ENSRNOG00000070355 | 0.28 | 0.19 | top1 | 1 | 0.19 | 2.9e-05 | -5.7 | -5.7 | 1.2e-08 | 0.98 | 0.14 | 0.16 | FALSE |
148 | PL | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.19 | 0.09 | blup | 1460 | 0.14 | 2.8e-04 | -4.9 | 5.7 | 1.2e-08 | -0.97 | 0.56 | 0.38 | FALSE |
149 | PL | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.22 | 0.18 | top1 | 1 | 0.18 | 5.5e-05 | 5.7 | -5.7 | 1.4e-08 | 0.99 | 0.10 | 0.08 | FALSE |
150 | PL | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.27 | 0.21 | top1 | 1 | 0.21 | 1.0e-05 | -5.6 | -5.6 | 2.6e-08 | 0.98 | 0.11 | 0.07 | FALSE |
151 | PL | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.22 | 0.13 | enet | 9 | 0.13 | 5.4e-04 | -5.6 | -5.7 | 1.2e-08 | 0.98 | 0.52 | 0.44 | FALSE |
152 | PL | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.17 | 0.11 | lasso | 4 | 0.17 | 8.1e-05 | -5.6 | 5.5 | 3.0e-08 | -0.98 | 0.52 | 0.42 | FALSE |
153 | PL2 | Gpr132 | gene expression | ENSRNOG00000013914 | 0.14 | 0.06 | top1 | 1 | 0.06 | 2.3e-04 | -5.7 | -5.7 | 1.0e-08 | 0.99 | 0.09 | 0.08 | FALSE |
154 | PL2 | Jag2 | gene expression | ENSRNOG00000013927 | 0.18 | 0.20 | top1 | 1 | 0.20 | 3.9e-11 | 5.3 | -5.3 | 1.1e-07 | 0.99 | 0.85 | 0.15 | FALSE |
155 | PL2 | Nudt14 | gene expression | ENSRNOG00000014362 | 0.12 | 0.12 | blup | 1447 | 0.12 | 4.1e-07 | 5.2 | -5.7 | 1.4e-08 | 0.99 | 0.53 | 0.47 | FALSE |
156 | PL2 | Brf1 | gene expression | ENSRNOG00000014595 | 0.31 | 0.30 | lasso | 18 | 0.31 | 4.6e-17 | -5.7 | 5.8 | 8.6e-09 | -0.68 | 0.53 | 0.47 | FALSE |
157 | PL2 | Pacs2 | gene expression | ENSRNOG00000014744 | 0.06 | 0.03 | blup | 1473 | 0.04 | 2.9e-03 | -5.7 | -5.6 | 2.5e-08 | 0.98 | 0.43 | 0.37 | FALSE |
158 | PL2 | Siva1 | gene expression | ENSRNOG00000028640 | 0.07 | 0.04 | blup | 1788 | 0.04 | 2.4e-03 | -4.9 | -5.2 | 2.5e-07 | 0.84 | 0.91 | 0.06 | FALSE |
159 | PL2 | Cep170b | gene expression | ENSRNOG00000033688 | 0.16 | 0.11 | lasso | 19 | 0.13 | 2.2e-07 | -5.4 | -5.6 | 2.0e-08 | 0.98 | 0.45 | 0.55 | FALSE |
160 | PL2 | Tedc1 | gene expression | ENSRNOG00000070355 | 0.09 | 0.06 | blup | 1463 | 0.06 | 4.9e-04 | -5.6 | -5.6 | 1.8e-08 | 0.98 | 0.50 | 0.44 | FALSE |
161 | PL2 | Jag2 | intron excision ratio | chr6:131985002:131985899 | 0.48 | 0.17 | blup | 1470 | 0.17 | 1.1e-09 | -5.7 | 5.3 | 1.2e-07 | -0.96 | 0.54 | 0.46 | FALSE |
162 | PL2 | Jag2 | intron excision ratio | chr6:131985002:131986156 | 0.37 | 0.20 | blup | 1470 | 0.22 | 3.0e-12 | -5.6 | -5.4 | 6.1e-08 | 0.97 | 0.54 | 0.46 | FALSE |
163 | PL2 | Jag2 | intron excision ratio | chr6:131985970:131986156 | 0.14 | 0.13 | lasso | 2 | 0.13 | 1.8e-07 | 5.4 | 5.5 | 3.4e-08 | -0.96 | 0.54 | 0.47 | FALSE |
164 | PL2 | Cep170b | intron excision ratio | chr6:131799072:131800354 | 0.22 | 0.06 | top1 | 1 | 0.06 | 3.9e-04 | -5.6 | -5.6 | 2.6e-08 | 0.98 | 0.11 | 0.08 | FALSE |
165 | PL2 | Cep170b | intron excision ratio | chr6:131799072:131800459 | 0.21 | 0.05 | top1 | 1 | 0.05 | 6.6e-04 | -5.6 | 5.6 | 2.6e-08 | -0.98 | 0.09 | 0.06 | FALSE |
166 | PL2 | Tmem121 | mRNA stability | ENSRNOG00000005174 | 0.24 | 0.29 | top1 | 1 | 0.29 | 2.9e-16 | -5.3 | -5.3 | 9.1e-08 | 0.98 | 0.83 | 0.17 | FALSE |
167 | PL2 | Jag2 | mRNA stability | ENSRNOG00000013927 | 0.29 | 0.14 | blup | 1470 | 0.16 | 7.8e-09 | 5.3 | -5.5 | 4.1e-08 | 0.97 | 0.53 | 0.47 | FALSE |
168 | PL2 | Brf1 | mRNA stability | ENSRNOG00000014595 | 0.28 | 0.20 | lasso | 45 | 0.30 | 5.1e-17 | -5.3 | 5.6 | 2.6e-08 | -1.00 | 0.53 | 0.47 | FALSE |
169 | PL2 | Pacs2 | mRNA stability | ENSRNOG00000014744 | 0.10 | 0.10 | top1 | 1 | 0.10 | 7.6e-06 | 5.3 | 5.3 | 1.1e-07 | -0.99 | 0.57 | 0.11 | FALSE |
170 | PL2 | Cep170b | mRNA stability | ENSRNOG00000033688 | 0.07 | 0.04 | lasso | 23 | 0.04 | 5.0e-03 | -5.4 | -5.5 | 3.3e-08 | 0.97 | 0.51 | 0.40 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.