Hub : Traits : Tail length : ← →

chr1:153,885,348-158,950,354

Trait: Tail length

Best TWAS P=5.321025e-08 · Best GWAS P=2.279343e-08 conditioned to 1

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Folr1	gene expression	ENSRNOG00000019902	0.62	0.50	enet	422	0.51	1.4e-64	5.0	-5.2	2.1e-07	-0.77	0.32	0.68	FALSE
2	Adipose	Rnf121	gene expression	ENSRNOG00000020175	0.05	0.01	blup	1540	0.02	4.3e-03	5.0	-5.4	6.0e-08	-0.84	0.38	0.54	FALSE
3	Adipose	Nup98	gene expression	ENSRNOG00000020347	0.21	0.15	blup	1360	0.16	6.8e-17	5.2	-5.3	9.9e-08	-0.86	0.46	0.54	FALSE
4	Adipose	Trim68	isoform ratio	ENSRNOT00000095839	0.19	0.21	lasso	30	0.22	3.8e-24	4.8	5.4	5.9e-08	0.96	0.62	0.38	FALSE
5	Adipose	NA	isoform ratio	ENSRNOT00000105061	0.08	0.03	enet	164	0.03	2.6e-04	4.7	5.1	2.7e-07	0.68	0.30	0.69	FALSE
6	Adipose	Trim21	mRNA stability	ENSRNOG00000018517	0.09	0.08	blup	2047	0.09	9.5e-10	4.6	-5.3	1.0e-07	-0.89	0.65	0.35	FALSE
7	Adipose	Il18bp	mRNA stability	ENSRNOG00000020150	0.12	0.08	top1	1	0.08	4.5e-09	5.2	-5.2	2.4e-07	-0.82	0.29	0.71	FALSE
8	BLA	Folr2	gene expression	ENSRNOG00000019890	0.12	0.01	blup	1566	0.04	4.1e-03	-4.2	-5.3	1.1e-07	-0.79	0.48	0.40	FALSE
9	BLA	Il18bp	gene expression	ENSRNOG00000020150	0.13	0.01	blup	1563	0.04	3.6e-03	-4.1	-5.3	1.2e-07	-0.80	0.49	0.38	FALSE
10	BLA	Pgap2	gene expression	ENSRNOG00000020371	0.09	0.04	blup	1361	0.06	5.8e-04	-4.2	5.1	3.2e-07	0.79	0.54	0.20	FALSE
11	BLA	Trim68	isoform ratio	ENSRNOT00000095839	0.19	0.10	lasso	15	0.14	4.0e-08	5.0	5.2	2.4e-07	0.96	0.52	0.48	FALSE
12	BLA	Trim68	intron excision ratio	chr1:157118269:157120638	0.10	0.02	lasso	16	0.04	3.5e-03	-4.2	-5.2	2.5e-07	-0.82	0.61	0.26	FALSE
13	BLA	Nup98	mRNA stability	ENSRNOG00000020347	0.13	0.05	lasso	23	0.06	5.8e-04	5.0	5.1	3.0e-07	0.98	0.41	0.52	FALSE
14	BLA	Hbb-bs	mRNA stability	ENSRNOG00000061299	0.17	0.09	blup	3262	0.15	1.2e-08	4.7	-5.1	2.7e-07	-0.88	0.69	0.32	FALSE
15	Brain	Atg16l2	gene expression	ENSRNOG00000019413	0.05	0.02	enet	10	0.04	1.5e-04	-4.3	-5.4	6.5e-08	-0.84	0.49	0.48	FALSE
16	Brain	Inppl1	gene expression	ENSRNOG00000019730	0.10	0.06	enet	309	0.08	4.1e-08	5.1	-5.3	1.3e-07	-0.87	0.34	0.66	FALSE
17	Brain	Folr2	gene expression	ENSRNOG00000019890	0.04	0.03	enet	7	0.03	6.3e-04	5.1	-5.2	2.2e-07	-0.95	0.33	0.58	FALSE
18	Brain	Lrrc51	gene expression	ENSRNOG00000020124	0.04	0.01	blup	1592	0.02	3.6e-03	-4.2	5.2	1.9e-07	0.80	0.51	0.29	FALSE
19	Brain	Rnf121	gene expression	ENSRNOG00000020175	0.09	0.05	blup	1540	0.06	2.0e-06	-4.1	-5.2	2.1e-07	-0.79	0.87	0.13	FALSE
20	Brain	Trpc2	gene expression	ENSRNOG00000020188	0.09	0.04	blup	1523	0.07	8.5e-07	-4.4	5.3	1.0e-07	0.82	0.66	0.34	FALSE
21	Brain	Stim1	gene expression	ENSRNOG00000020425	0.04	0.02	blup	1413	0.04	6.3e-05	4.9	5.4	5.6e-08	0.87	0.40	0.59	FALSE
22	Brain	Olr61	gene expression	ENSRNOG00000071207	0.09	0.09	blup	2309	0.12	6.2e-11	5.0	-5.3	1.3e-07	-0.98	0.48	0.52	FALSE
23	Brain	Trim68	isoform ratio	ENSRNOT00000075222	0.34	0.41	enet	196	0.43	7.6e-43	4.9	5.2	1.7e-07	0.85	0.78	0.22	TRUE
24	Brain	Trim68	isoform ratio	ENSRNOT00000092838	0.54	0.47	enet	231	0.48	1.3e-49	5.0	-5.3	1.4e-07	-0.81	0.76	0.24	FALSE
25	Brain	Trim68	isoform ratio	ENSRNOT00000095839	0.19	0.20	blup	2208	0.24	4.6e-22	4.8	5.3	9.6e-08	0.95	0.65	0.35	FALSE
26	Brain	Trpc2	intron excision ratio	chr1:156450846:156452614	0.12	0.08	top1	1	0.08	8.7e-08	5.2	-5.2	2.2e-07	-0.83	0.28	0.72	FALSE
27	Brain	Fchsd2	mRNA stability	ENSRNOG00000019319	0.10	0.10	enet	23	0.10	6.9e-10	4.8	-5.4	5.5e-08	-0.87	0.36	0.64	TRUE
28	Eye	Trim68	isoform ratio	ENSRNOT00000075222	0.50	0.12	top1	1	0.12	6.3e-03	5.4	5.4	8.5e-08	0.93	0.10	0.06	FALSE
29	IL	Trim68	isoform ratio	ENSRNOT00000092838	0.19	0.12	lasso	5	0.13	4.3e-04	5.3	-5.3	9.7e-08	-0.98	0.57	0.37	FALSE
30	LHb	Hbb-b1	isoform ratio	ENSRNOT00000089125	0.67	0.33	enet	14	0.50	8.4e-14	4.6	5.1	3.4e-07	-0.73	0.69	0.31	TRUE
31	LHb	Hbb-b1	intron excision ratio	chr1:158218619:158219259	0.43	0.05	blup	3232	0.07	1.1e-02	4.6	5.1	3.1e-07	0.92	0.45	0.23	TRUE
32	LHb	Hbb-b1	intron excision ratio	chr1:158237229:158237869	0.25	0.04	lasso	2	0.07	8.3e-03	5.0	-5.3	1.1e-07	-0.89	0.58	0.35	FALSE
33	Liver	Folr1	gene expression	ENSRNOG00000019902	0.05	0.02	top1	1	0.02	4.4e-03	5.2	-5.2	2.4e-07	-0.73	0.05	0.05	TRUE
34	Liver	Il18bp	gene expression	ENSRNOG00000020150	0.26	0.14	enet	368	0.14	1.6e-15	5.0	-5.3	1.4e-07	-0.84	0.31	0.69	FALSE
35	Liver	Rnf121	gene expression	ENSRNOG00000020175	0.05	0.01	blup	1540	0.01	1.5e-02	-4.2	-5.2	2.4e-07	-0.79	0.54	0.29	FALSE
36	Liver	Art2b	isoform ratio	ENSRNOT00000026644	0.03	0.01	blup	1534	0.01	1.6e-02	5.0	5.4	7.7e-08	0.87	0.28	0.43	FALSE
37	Liver	Trpc2	intron excision ratio	chr1:156450846:156452614	0.05	0.03	enet	212	0.03	4.5e-04	5.0	-5.1	3.4e-07	-0.81	0.34	0.63	FALSE
38	Liver	Nup98	intron excision ratio	chr1:156575961:156590985	0.02	0.02	top1	1	0.02	5.4e-03	5.2	5.2	2.6e-07	0.82	0.04	0.03	FALSE
39	Liver	Nup98	intron excision ratio	chr1:156575961:156591264	0.02	0.01	blup	1360	0.01	1.3e-02	5.2	-5.4	7.2e-08	-0.85	0.27	0.30	FALSE
40	Liver	Pde2a	mRNA stability	ENSRNOG00000019560	0.05	0.01	blup	1630	0.02	1.2e-03	-4.0	-5.2	2.0e-07	-0.83	0.46	0.49	FALSE
41	NAcc	Il18bp	gene expression	ENSRNOG00000020150	0.05	0.03	top1	1	0.03	2.1e-03	5.2	-5.2	2.2e-07	-0.81	0.06	0.05	FALSE
42	NAcc	Trpc2	gene expression	ENSRNOG00000020188	0.07	0.04	top1	1	0.04	4.1e-04	5.2	5.2	2.2e-07	0.84	0.07	0.08	FALSE
43	NAcc	Hbb-b1	gene expression	ENSRNOG00000047098	0.06	0.04	blup	3252	0.04	3.5e-04	4.9	5.1	2.6e-07	0.90	0.64	0.35	FALSE
44	NAcc	Trim68	isoform ratio	ENSRNOT00000095839	0.21	0.16	blup	2201	0.20	1.1e-14	5.0	5.2	1.8e-07	0.97	0.49	0.51	FALSE
45	NAcc	Trim68	intron excision ratio	chr1:157115748:157116120	0.03	0.01	blup	2201	0.02	1.0e-02	-4.5	-5.4	5.3e-08	-0.95	0.44	0.33	TRUE
46	NAcc	Trim68	intron excision ratio	chr1:157116858:157118174	0.06	0.06	top1	1	0.06	3.5e-05	5.2	-5.2	2.1e-07	-0.82	0.23	0.26	FALSE
47	NAcc	Trim68	intron excision ratio	chr1:157118269:157120638	0.08	0.06	blup	2201	0.07	8.2e-06	5.1	-5.2	1.6e-07	-0.97	0.52	0.48	FALSE
48	NAcc	Hbb-bs	mRNA stability	ENSRNOG00000061299	0.34	0.25	enet	35	0.29	1.6e-21	4.5	-5.2	1.6e-07	-0.76	0.76	0.24	TRUE
49	OFC	Numa1	gene expression	ENSRNOG00000000417	0.33	0.01	blup	1569	0.03	6.1e-02	-4.2	-5.1	3.1e-07	-0.78	0.28	0.17	FALSE
50	OFC	Olr61	gene expression	ENSRNOG00000071207	0.13	0.13	top1	1	0.13	4.5e-04	5.3	-5.3	1.3e-07	-0.98	0.12	0.05	FALSE
51	OFC	Trim68	isoform ratio	ENSRNOT00000095839	0.28	0.02	blup	2197	0.06	1.8e-02	5.2	5.4	8.6e-08	0.96	0.42	0.47	FALSE
52	PL	Atg16l2	gene expression	ENSRNOG00000019413	0.21	0.16	top1	1	0.16	2.7e-12	5.2	-5.2	1.5e-07	-0.93	0.10	0.90	FALSE
53	PL	Trim68	isoform ratio	ENSRNOT00000095839	0.18	0.22	blup	2201	0.25	4.2e-19	4.9	5.3	1.3e-07	0.92	0.75	0.25	FALSE
54	PL	Trim68	intron excision ratio	chr1:157115748:157116120	0.05	0.04	top1	1	0.04	2.4e-04	5.2	-5.2	2.3e-07	-0.81	0.12	0.10	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.