Best TWAS P = 5.91e-10 · Best GWAS P= 9.02e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | LOC134487042 | gene expression | LOC134487042 | 0.02 | 2036 | 0 | 1.2e-01 | 5.21 | 1.89e-07 | 0.34 | FALSE |
| BLA | Mtor | gene expression | Mtor | 0.07 | 3 | 0.04 | 2.7e-03 | -5.29 | 1.20e-07 | 0.58 | FALSE |
| Brain | Tnfrsf9 | gene expression | Tnfrsf9 | 0.74 | 2317 | 0.24 | 1.5e-22 | -5.29 | 1.23e-07 | 0.46 | TRUE |
| Brain | Casz1 | intron excision ratio | chr5_164670614_164670865 | 0.12 | 47 | 0.07 | 8.7e-07 | 5.4 | 6.58e-08 | 0.52 | TRUE |
| Brain | Tmem201 | mRNA stability | Tmem201 | 0.04 | 34 | 0.04 | 4.7e-05 | 5.22 | 1.78e-07 | 0.36 | TRUE |
| LHb | Nmnat1 | intron excision ratio | chr5_165198986_165199288 | 0.19 | 1862 | 0.06 | 1.7e-02 | 5.23 | 1.66e-07 | 0.21 | TRUE |
| LHb | Nmnat1 | intron excision ratio | chr5_165198986_165200266 | 0.22 | 1862 | 0.09 | 3.2e-03 | -5.32 | 1.05e-07 | 0.27 | FALSE |
| Liver | Rbp7 | gene expression | Rbp7 | 0.03 | 1815 | 0.01 | 3.0e-02 | 5.5 | 3.86e-08 | 0.3 | FALSE |
| Liver | Masp2 | intron excision ratio | chr5_164320359_164321967 | 0.13 | 1 | 0.13 | 8.1e-14 | 5.35 | 9.02e-08 | 0.95 | FALSE |
| Liver | Rbp7 | intron excision ratio | chr5_165170465_165170968 | 0.03 | 1815 | 0.01 | 1.2e-02 | 5.34 | 9.07e-08 | 0.23 | FALSE |
| Liver | C5h1orf127 | mRNA stability | C5h1orf127 | 0.02 | 1 | 0.01 | 9.2e-03 | 5.35 | 9.02e-08 | 0.1 | FALSE |
| NAcc | Ctnnbip1 | gene expression | Ctnnbip1 | 0.05 | 17 | 0.06 | 7.2e-09 | 6.19 | 5.91e-10 | 0.2 | TRUE |
| OFC | Cenps | alternative polyA | XM_063287047.1 | 0.25 | 1 | 0.13 | 4.9e-04 | -5.29 | 1.21e-07 | 0.08 | TRUE |
| PL | Pik3cd | alternative TSS | XM_063288141.1 | 0.06 | 74 | 0.03 | 5.1e-04 | 5.29 | 1.25e-07 | 0.28 | FALSE |
| PL | Casz1 | intron excision ratio | chr5_164670614_164670865 | 0.06 | 69 | 0.03 | 4.0e-04 | 5.28 | 1.31e-07 | 0.32 | FALSE |
| pVTA | Tnfrsf9 | intron excision ratio | chr5_166679465_166680797 | 0.21 | 12 | 0.12 | 9.7e-10 | 5.24 | 1.59e-07 | 0.48 | TRUE |