Best TWAS P = 6.31e-09 · Best GWAS P= 3.43e-09 conditioned to 2.32e-09
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLA | Sfxn4 | gene expression | Sfxn4 | 0.07 | 1 | 0.02 | 3.4e-02 | -5.7 | 1.20e-08 | 0.08 | FALSE |
| Brain | Cacul1 | isoform ratio | NM_001416001.1 | 0.1 | 1 | 0.08 | 3.5e-08 | 5.81 | 6.31e-09 | 0.95 | TRUE |
| Brain | Cacul1 | intron excision ratio | chr1_269663603_269672274 | 0.11 | 1 | 0.08 | 4.3e-08 | -5.81 | 6.31e-09 | 0.95 | FALSE |
| IC | Grk5 | gene expression | Grk5 | 0.12 | 1 | 0.07 | 7.4e-04 | -5.61 | 2.03e-08 | 0.16 | FALSE |
| IC | Cacul1 | isoform ratio | NM_001014248.2 | 0.1 | 5 | 0.04 | 8.5e-03 | 5.58 | 2.43e-08 | 0.64 | FALSE |
| Liver | Grk5 | mRNA stability | Grk5 | 0.03 | 1480 | 0.01 | 3.6e-02 | -5.21 | 1.87e-07 | 0.24 | FALSE |
| NAcc | Sfxn4 | gene expression | Sfxn4 | 0.05 | 16 | 0.06 | 1.5e-09 | 5.63 | 1.80e-08 | 0.38 | TRUE |
| NAcc | Cacul1 | isoform ratio | NM_001014248.2 | 0.16 | 1 | 0.05 | 9.7e-08 | -5.73 | 9.97e-09 | 0.92 | FALSE |
| PL | Sfxn4 | gene expression | Sfxn4 | 0.1 | 1433 | 0.1 | 4.4e-11 | 5.41 | 6.40e-08 | 0.31 | TRUE |
| PL | Cacul1 | isoform ratio | NM_001014248.2 | 0.02 | 1822 | 0.01 | 1.3e-02 | 5.59 | 2.34e-08 | 0.66 | FALSE |
| pVTA | Sfxn4 | gene expression | Sfxn4 | 0.06 | 1433 | 0.04 | 3.2e-04 | 5.5 | 3.70e-08 | 0.45 | FALSE |