Best TWAS P=1.861173e-13 · Best GWAS P=5.45157e-13 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Pdlim2 | gene expression | ENSRNOG00000008543 | 0.04 | 0.02 | enet | 172 | 0.02 | 9.3e-04 | 7.1 | 7.2 | 8.7e-13 | 1.00 | 0.41 | 0.57 | FALSE |
2 | Adipose | Piwil2 | gene expression | ENSRNOG00000009871 | 0.04 | 0.02 | top1 | 1 | 0.02 | 3.1e-03 | 7.1 | 7.1 | 1.7e-12 | 1.00 | 0.03 | 0.04 | FALSE |
3 | Adipose | Polr3d | gene expression | ENSRNOG00000010028 | 0.07 | 0.05 | enet | 246 | 0.06 | 8.3e-07 | 7.1 | -7.1 | 1.3e-12 | -0.99 | 0.37 | 0.63 | FALSE |
4 | Adipose | Bmp1 | gene expression | ENSRNOG00000010890 | 0.05 | 0.05 | top1 | 1 | 0.05 | 1.1e-06 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.31 | 0.61 | FALSE |
5 | Adipose | Fhip2b | gene expression | ENSRNOG00000012014 | 0.02 | 0.01 | lasso | 12 | 0.01 | 2.8e-02 | 7.1 | 7.1 | 1.4e-12 | -1.00 | 0.27 | 0.56 | TRUE |
6 | Adipose | Dmtn | gene expression | ENSRNOG00000012273 | 0.17 | 0.20 | top1 | 1 | 0.20 | 1.7e-21 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.33 | 0.67 | FALSE |
7 | Adipose | Slc25a37 | gene expression | ENSRNOG00000015495 | 0.02 | 0.01 | enet | 52 | 0.01 | 8.5e-03 | 7.1 | 7.1 | 1.8e-12 | 1.00 | 0.15 | 0.48 | FALSE |
8 | Adipose | Loxl2 | gene expression | ENSRNOG00000016758 | 0.02 | 0.01 | top1 | 1 | 0.01 | 1.9e-02 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.01 | 0.03 | FALSE |
9 | Adipose | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.15 | 0.09 | top1 | 1 | 0.09 | 8.5e-10 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.30 | 0.70 | FALSE |
10 | Adipose | Chmp7 | gene expression | ENSRNOG00000016939 | 0.38 | 0.34 | enet | 263 | 0.35 | 9.9e-40 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.31 | 0.69 | FALSE |
11 | Adipose | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.36 | 0.33 | enet | 182 | 0.33 | 1.9e-37 | 7.0 | 7.1 | 1.1e-12 | 1.00 | 0.33 | 0.67 | FALSE |
12 | Adipose | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.16 | 0.14 | top1 | 1 | 0.14 | 1.7e-15 | 7.1 | 7.1 | 1.7e-12 | 1.00 | 0.38 | 0.62 | FALSE |
13 | Adipose | Fhip2b | isoform ratio | ENSRNOT00000097198 | 0.02 | 0.01 | top1 | 1 | 0.01 | 3.6e-02 | 7.1 | 7.1 | 1.4e-12 | 0.99 | 0.02 | 0.04 | FALSE |
14 | Adipose | Bin3 | isoform ratio | ENSRNOT00000024614 | 0.06 | 0.05 | enet | 214 | 0.05 | 4.2e-06 | 7.1 | 7.1 | 9.1e-13 | 1.00 | 0.41 | 0.59 | FALSE |
15 | Adipose | Bin3 | isoform ratio | ENSRNOT00000099631 | 0.07 | 0.05 | enet | 174 | 0.05 | 1.2e-06 | 7.1 | -7.1 | 9.0e-13 | -1.00 | 0.41 | 0.59 | FALSE |
16 | Adipose | Hr | mRNA stability | ENSRNOG00000011427 | 0.02 | 0.01 | blup | 649 | 0.02 | 3.3e-03 | 7.1 | -7.0 | 1.9e-12 | -0.97 | 0.24 | 0.46 | FALSE |
17 | Adipose | Dok2 | mRNA stability | ENSRNOG00000013922 | 0.04 | 0.01 | blup | 755 | 0.01 | 1.7e-02 | -1.7 | 5.3 | 1.0e-07 | 0.81 | 0.30 | 0.39 | FALSE |
18 | Adipose | R3hcc1 | mRNA stability | ENSRNOG00000016777 | 0.28 | 0.17 | top1 | 1 | 0.17 | 1.7e-18 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.30 | 0.70 | FALSE |
19 | BLA | Ppp3cc | alternative polyA | ENSRNOT00000082505 | 0.07 | 0.02 | blup | 639 | 0.03 | 1.6e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.27 | 0.42 | FALSE |
20 | BLA | Ppp3cc | alternative polyA | ENSRNOT00000091826 | 0.07 | 0.02 | blup | 639 | 0.02 | 1.9e-02 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.26 | 0.41 | FALSE |
21 | BLA | Sorbs3 | alternative TSS | ENSRNOT00000012056 | 0.12 | 0.05 | blup | 711 | 0.06 | 4.5e-04 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.39 | 0.55 | FALSE |
22 | BLA | Sorbs3 | alternative TSS | ENSRNOT00000113720 | 0.12 | 0.05 | blup | 711 | 0.06 | 5.1e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.55 | FALSE |
23 | BLA | Sorbs3 | gene expression | ENSRNOG00000008829 | 0.07 | 0.04 | top1 | 1 | 0.04 | 3.5e-03 | 7.0 | -7.0 | 1.9e-12 | -1.00 | 0.03 | 0.04 | FALSE |
24 | BLA | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.51 | 0.30 | blup | 639 | 0.31 | 6.4e-17 | 7.0 | 7.1 | 1.3e-12 | 1.00 | 0.39 | 0.61 | FALSE |
25 | BLA | Polr3d | gene expression | ENSRNOG00000010028 | 0.11 | 0.01 | blup | 588 | 0.03 | 1.2e-02 | 7.0 | -7.1 | 1.4e-12 | -1.00 | 0.34 | 0.58 | FALSE |
26 | BLA | Lgi3 | gene expression | ENSRNOG00000011323 | 0.14 | 0.07 | enet | 161 | 0.08 | 3.1e-05 | 7.1 | -6.9 | 5.2e-12 | -0.79 | 0.35 | 0.65 | FALSE |
27 | BLA | Dmtn | gene expression | ENSRNOG00000012273 | 0.24 | 0.21 | top1 | 1 | 0.21 | 1.8e-11 | 7.2 | -7.2 | 7.1e-13 | -1.00 | 0.20 | 0.80 | FALSE |
28 | BLA | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.15 | 0.08 | enet | 136 | 0.08 | 4.0e-05 | 7.1 | 7.1 | 1.2e-12 | 0.99 | 0.30 | 0.69 | FALSE |
29 | BLA | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.18 | 0.07 | blup | 528 | 0.08 | 4.5e-05 | 7.0 | 7.1 | 1.4e-12 | 1.00 | 0.34 | 0.65 | FALSE |
30 | BLA | Ccar2 | gene expression | ENSRNOG00000018295 | 0.11 | 0.06 | top1 | 1 | 0.06 | 4.0e-04 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.04 | 0.08 | FALSE |
31 | BLA | Phyhip | intron excision ratio | chr15:45535048:45538056 | 0.08 | 0.02 | blup | 572 | 0.04 | 5.0e-03 | 7.2 | -7.1 | 1.5e-12 | -1.00 | 0.26 | 0.46 | FALSE |
32 | BLA | Dmtn | intron excision ratio | chr15:45694169:45704328 | 0.05 | 0.02 | top1 | 1 | 0.02 | 3.2e-02 | 7.0 | -7.0 | 2.6e-12 | -1.00 | 0.03 | 0.04 | FALSE |
33 | BLA | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.08 | 0.04 | top1 | 1 | 0.04 | 4.0e-03 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.03 | 0.05 | FALSE |
34 | BLA | Phyhip | mRNA stability | ENSRNOG00000010555 | 0.07 | 0.05 | top1 | 1 | 0.05 | 1.8e-03 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.03 | 0.05 | FALSE |
35 | Brain | Ppp3cc | alternative TSS | ENSRNOT00000091826 | 0.06 | 0.04 | top1 | 1 | 0.04 | 1.4e-04 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.11 | 0.32 | FALSE |
36 | Brain | Ppp3cc | alternative TSS | ENSRNOT00000100817 | 0.07 | 0.05 | top1 | 1 | 0.05 | 8.4e-06 | 7.2 | -7.2 | 7.1e-13 | -1.00 | 0.19 | 0.57 | FALSE |
37 | Brain | Ppp3cc | alternative TSS | ENSRNOT00000082505 | 0.08 | 0.06 | top1 | 1 | 0.06 | 1.5e-06 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.22 | 0.64 | FALSE |
38 | Brain | Ppp3cc | alternative TSS | ENSRNOT00000100817 | 0.08 | 0.06 | top1 | 1 | 0.06 | 2.0e-06 | 7.2 | -7.2 | 7.1e-13 | -1.00 | 0.20 | 0.59 | FALSE |
39 | Brain | Rhobtb2 | alternative TSS | ENSRNOT00000117351 | 0.03 | 0.01 | top1 | 1 | 0.01 | 2.7e-02 | 7.0 | 7.0 | 1.9e-12 | 1.00 | 0.02 | 0.04 | FALSE |
40 | Brain | Rhobtb2 | alternative TSS | ENSRNOT00000023876 | 0.03 | 0.01 | top1 | 1 | 0.01 | 3.8e-02 | 7.0 | -7.0 | 1.9e-12 | -1.00 | 0.02 | 0.03 | FALSE |
41 | Brain | Rhobtb2 | alternative TSS | ENSRNOT00000117351 | 0.03 | 0.01 | top1 | 1 | 0.01 | 2.9e-02 | 7.0 | 7.0 | 1.9e-12 | 1.00 | 0.02 | 0.04 | FALSE |
42 | Brain | Sorbs3 | gene expression | ENSRNOG00000008829 | 0.16 | 0.11 | enet | 118 | 0.13 | 5.3e-12 | 7.1 | -7.3 | 2.3e-13 | -1.00 | 0.42 | 0.58 | FALSE |
43 | Brain | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.40 | 0.34 | lasso | 13 | 0.34 | 1.3e-32 | 7.1 | 7.2 | 4.4e-13 | 0.98 | 0.39 | 0.61 | FALSE |
44 | Brain | Slc39a14 | gene expression | ENSRNOG00000009832 | 0.05 | 0.04 | top1 | 1 | 0.04 | 1.1e-04 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.04 | 0.07 | FALSE |
45 | Brain | Polr3d | gene expression | ENSRNOG00000010028 | 0.17 | 0.12 | blup | 588 | 0.13 | 2.1e-12 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.37 | 0.63 | FALSE |
46 | Brain | Bmp1 | gene expression | ENSRNOG00000010890 | 0.19 | 0.22 | blup | 634 | 0.22 | 4.3e-20 | 7.1 | 7.1 | 1.1e-12 | 1.00 | 0.35 | 0.65 | FALSE |
47 | Brain | Lgi3 | gene expression | ENSRNOG00000011323 | 0.10 | 0.10 | top1 | 1 | 0.10 | 6.4e-10 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.34 | 0.66 | FALSE |
48 | Brain | Hr | gene expression | ENSRNOG00000011427 | 0.02 | 0.02 | top1 | 1 | 0.02 | 8.0e-03 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.03 | 0.04 | FALSE |
49 | Brain | Nudt18 | gene expression | ENSRNOG00000011831 | 0.13 | 0.04 | enet | 79 | 0.06 | 2.5e-06 | 5.0 | -7.2 | 6.8e-13 | -0.13 | 0.36 | 0.64 | FALSE |
50 | Brain | Dmtn | gene expression | ENSRNOG00000012273 | 0.15 | 0.17 | enet | 172 | 0.18 | 1.9e-16 | 7.2 | -7.0 | 2.5e-12 | -0.96 | 0.34 | 0.66 | FALSE |
51 | Brain | Entpd4 | gene expression | ENSRNOG00000016321 | 0.07 | 0.04 | blup | 332 | 0.05 | 3.7e-05 | 7.1 | -7.1 | 1.2e-12 | -1.00 | 0.24 | 0.75 | FALSE |
52 | Brain | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.09 | 0.06 | blup | 436 | 0.07 | 6.3e-07 | 7.1 | 6.3 | 2.6e-10 | 0.87 | 0.30 | 0.70 | TRUE |
53 | Brain | Chmp7 | gene expression | ENSRNOG00000016939 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.9e-03 | 7.1 | -7.1 | 9.6e-13 | -1.00 | 0.02 | 0.05 | FALSE |
54 | Brain | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.31 | 0.26 | blup | 528 | 0.26 | 1.6e-24 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.35 | 0.65 | FALSE |
55 | Brain | Egr3 | gene expression | ENSRNOG00000017828 | 0.04 | 0.02 | lasso | 13 | 0.03 | 1.8e-03 | 7.1 | -7.2 | 5.8e-13 | 0.04 | 0.38 | 0.54 | TRUE |
56 | Brain | Ccar2 | gene expression | ENSRNOG00000018295 | 0.15 | 0.11 | blup | 722 | 0.12 | 1.6e-11 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.42 | 0.58 | FALSE |
57 | Brain | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.26 | 0.20 | blup | 479 | 0.22 | 8.9e-20 | 7.1 | 7.1 | 1.5e-12 | 1.00 | 0.32 | 0.68 | FALSE |
58 | Brain | Dmtn | isoform ratio | ENSRNOT00000106565 | 0.04 | 0.03 | top1 | 1 | 0.03 | 5.6e-04 | 7.1 | 7.1 | 1.0e-12 | 1.00 | 0.03 | 0.06 | FALSE |
59 | Brain | Egr3 | isoform ratio | ENSRNOT00000116948 | 0.03 | 0.02 | enet | 15 | 0.02 | 2.7e-03 | 7.1 | 6.9 | 4.8e-12 | 1.00 | 0.34 | 0.48 | FALSE |
60 | Brain | Bin3 | isoform ratio | ENSRNOT00000024614 | 0.08 | 0.06 | lasso | 14 | 0.07 | 8.4e-07 | 7.1 | 7.1 | 9.6e-13 | 1.00 | 0.42 | 0.58 | FALSE |
61 | Brain | Bin3 | isoform ratio | ENSRNOT00000099631 | 0.08 | 0.07 | top1 | 1 | 0.07 | 5.8e-07 | 7.1 | -7.1 | 9.6e-13 | -1.00 | 0.29 | 0.56 | FALSE |
62 | Brain | Ppp3cc | intron excision ratio | chr15:45297492:45298385 | 0.03 | 0.02 | top1 | 1 | 0.02 | 5.2e-03 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.02 | 0.04 | FALSE |
63 | Brain | Dmtn | intron excision ratio | chr15:45679395:45679904 | 0.08 | 0.05 | blup | 685 | 0.06 | 3.2e-06 | 7.1 | 7.0 | 2.0e-12 | 0.96 | 0.34 | 0.66 | FALSE |
64 | Brain | Dmtn | intron excision ratio | chr15:45693188:45694000 | 0.04 | 0.05 | top1 | 1 | 0.04 | 4.8e-05 | 7.0 | -7.0 | 2.6e-12 | -0.99 | 0.08 | 0.09 | FALSE |
65 | Brain | Dmtn | intron excision ratio | chr15:45693794:45694000 | 0.03 | 0.02 | top1 | 1 | 0.02 | 3.2e-03 | 7.2 | 7.2 | 7.1e-13 | 0.99 | 0.03 | 0.07 | FALSE |
66 | Brain | Dmtn | intron excision ratio | chr15:45694169:45702131 | 0.04 | 0.01 | blup | 685 | 0.04 | 1.4e-04 | 7.0 | 6.2 | 5.0e-10 | 0.92 | 0.33 | 0.64 | FALSE |
67 | Brain | Dmtn | intron excision ratio | chr15:45694169:45704328 | 0.08 | 0.07 | blup | 685 | 0.08 | 4.6e-08 | 7.2 | -6.7 | 1.9e-11 | -0.97 | 0.34 | 0.66 | FALSE |
68 | Brain | Dmtn | intron excision ratio | chr15:45702261:45704328 | 0.06 | 0.08 | top1 | 1 | 0.08 | 8.7e-08 | 7.2 | 7.2 | 7.1e-13 | 0.99 | 0.20 | 0.78 | FALSE |
69 | Brain | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.40 | 0.31 | blup | 639 | 0.33 | 2.7e-31 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.61 | FALSE |
70 | Brain | Slc39a14 | mRNA stability | ENSRNOG00000009832 | 0.07 | 0.06 | blup | 612 | 0.06 | 5.3e-06 | 7.1 | -7.1 | 1.5e-12 | -1.00 | 0.38 | 0.62 | FALSE |
71 | Brain | R3hcc1 | mRNA stability | ENSRNOG00000016777 | 0.08 | 0.05 | blup | 436 | 0.06 | 3.0e-06 | 7.1 | 7.1 | 1.5e-12 | 1.00 | 0.30 | 0.70 | FALSE |
72 | Brain | Chmp7 | mRNA stability | ENSRNOG00000016939 | 0.05 | 0.04 | top1 | 1 | 0.04 | 7.7e-05 | 7.0 | -7.0 | 1.9e-12 | -1.00 | 0.05 | 0.08 | FALSE |
73 | Brain | Bin3 | mRNA stability | ENSRNOG00000018023 | 0.05 | 0.04 | top1 | 1 | 0.04 | 1.2e-04 | 7.1 | 7.1 | 1.8e-12 | 1.00 | 0.05 | 0.06 | FALSE |
74 | Brain | Ccar2 | mRNA stability | ENSRNOG00000018295 | 0.04 | 0.02 | blup | 722 | 0.03 | 1.4e-03 | 7.2 | 7.1 | 1.3e-12 | 1.00 | 0.38 | 0.53 | FALSE |
75 | Eye | Phyhip | gene expression | ENSRNOG00000010555 | 0.77 | 0.32 | blup | 572 | 0.52 | 1.2e-09 | 7.0 | -7.1 | 1.5e-12 | -1.00 | 0.36 | 0.63 | FALSE |
76 | Eye | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.37 | 0.23 | enet | 180 | 0.25 | 8.7e-05 | 7.1 | 7.1 | 1.1e-12 | 1.00 | 0.28 | 0.58 | FALSE |
77 | IL | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.54 | 0.28 | blup | 638 | 0.28 | 1.7e-07 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.61 | FALSE |
78 | IL | Dmtn | gene expression | ENSRNOG00000012273 | 0.23 | 0.10 | top1 | 1 | 0.10 | 1.9e-03 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.04 | 0.07 | FALSE |
79 | IL | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.24 | 0.10 | lasso | 1 | 0.11 | 1.6e-03 | 7.1 | 7.1 | 1.5e-12 | -1.00 | 0.25 | 0.47 | FALSE |
80 | IL | NA | gene expression | ENSRNOG00000067974 | 0.20 | 0.05 | blup | 330 | 0.06 | 1.2e-02 | 7.1 | 7.1 | 1.1e-12 | 1.00 | 0.14 | 0.44 | FALSE |
81 | IL | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.33 | 0.13 | top1 | 1 | 0.13 | 6.3e-04 | 7.1 | 7.1 | 1.2e-12 | 1.00 | 0.05 | 0.07 | FALSE |
82 | IL | Bin3 | mRNA stability | ENSRNOG00000018023 | 0.16 | 0.03 | blup | 713 | 0.05 | 2.9e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.21 | 0.29 | FALSE |
83 | LHb | Sorbs3 | gene expression | ENSRNOG00000008829 | 0.22 | 0.06 | blup | 707 | 0.11 | 1.5e-03 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.32 | 0.45 | FALSE |
84 | LHb | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.37 | 0.21 | blup | 637 | 0.22 | 7.1e-06 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.38 | 0.60 | FALSE |
85 | LHb | Phyhip | gene expression | ENSRNOG00000010555 | 0.52 | 0.30 | enet | 3 | 0.31 | 3.9e-08 | 7.1 | 7.1 | 1.3e-12 | -0.81 | 0.36 | 0.64 | TRUE |
86 | LHb | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.52 | 0.26 | top1 | 1 | 0.26 | 8.1e-07 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.09 | 0.19 | FALSE |
87 | LHb | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.28 | 0.10 | blup | 637 | 0.12 | 8.4e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.33 | 0.51 | FALSE |
88 | LHb | Loxl2 | mRNA stability | ENSRNOG00000016758 | 0.16 | 0.00 | lasso | 1 | 0.08 | 7.0e-03 | 7.1 | -7.1 | 1.5e-12 | -1.00 | 0.12 | 0.33 | FALSE |
89 | Liver | R3hcc1 | alternative TSS | ENSRNOT00000022706 | 0.11 | 0.09 | top1 | 1 | 0.09 | 7.3e-10 | 7.1 | 7.1 | 1.7e-12 | 1.00 | 0.35 | 0.65 | FALSE |
90 | Liver | R3hcc1 | alternative TSS | ENSRNOT00000101142 | 0.11 | 0.09 | enet | 107 | 0.09 | 5.6e-10 | 7.1 | -7.1 | 1.1e-12 | -0.99 | 0.30 | 0.70 | FALSE |
91 | Liver | Pdlim2 | gene expression | ENSRNOG00000008543 | 0.02 | 0.02 | enet | 271 | 0.02 | 3.5e-03 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.33 | 0.45 | FALSE |
92 | Liver | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.02 | 0.01 | top1 | 1 | 0.01 | 8.0e-03 | 7.1 | -7.1 | 1.0e-12 | -1.00 | 0.02 | 0.03 | FALSE |
93 | Liver | Slc39a14 | gene expression | ENSRNOG00000009832 | 0.03 | 0.02 | blup | 611 | 0.03 | 5.2e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.35 | 0.58 | FALSE |
94 | Liver | Polr3d | gene expression | ENSRNOG00000010028 | 0.08 | 0.04 | enet | 97 | 0.06 | 5.6e-07 | 7.1 | -7.1 | 1.3e-12 | 0.11 | 0.37 | 0.63 | TRUE |
95 | Liver | Bmp1 | gene expression | ENSRNOG00000010890 | 0.10 | 0.13 | top1 | 1 | 0.13 | 3.7e-14 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.33 | 0.67 | FALSE |
96 | Liver | Fgf17 | gene expression | ENSRNOG00000012912 | 0.02 | 0.01 | blup | 697 | 0.01 | 1.7e-02 | 7.1 | -6.7 | 2.5e-11 | -0.97 | 0.24 | 0.48 | FALSE |
97 | Liver | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.43 | 0.38 | top1 | 1 | 0.38 | 4.3e-44 | 7.1 | -7.1 | 1.7e-12 | -1.00 | 0.35 | 0.65 | FALSE |
98 | Liver | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.8e-04 | 7.0 | 7.0 | 2.4e-12 | 1.00 | 0.04 | 0.06 | FALSE |
99 | Liver | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.05 | 0.03 | top1 | 1 | 0.03 | 1.3e-04 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.08 | 0.16 | FALSE |
100 | Liver | NA | gene expression | ENSRNOG00000067366 | 0.03 | 0.02 | top1 | 1 | 0.02 | 2.0e-03 | 7.1 | -7.1 | 1.1e-12 | -1.00 | 0.01 | 0.08 | FALSE |
101 | Liver | Sorbs3 | intron excision ratio | chr15:45263517:45263631 | 0.03 | 0.02 | enet | 478 | 0.02 | 1.5e-03 | 7.1 | -7.1 | 1.1e-12 | -1.00 | 0.38 | 0.54 | FALSE |
102 | Liver | Sorbs3 | intron excision ratio | chr15:45263517:45264017 | 0.03 | 0.03 | enet | 478 | 0.03 | 6.6e-04 | 7.1 | 7.1 | 1.1e-12 | 1.00 | 0.39 | 0.56 | FALSE |
103 | Liver | Slc39a14 | mRNA stability | ENSRNOG00000009832 | 0.02 | 0.00 | blup | 611 | 0.02 | 4.0e-03 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.28 | 0.45 | FALSE |
104 | Liver | R3hcc1 | mRNA stability | ENSRNOG00000016777 | 0.11 | 0.09 | enet | 107 | 0.09 | 2.8e-10 | 7.1 | -7.1 | 1.1e-12 | -0.99 | 0.29 | 0.71 | FALSE |
105 | Liver | Bin3 | mRNA stability | ENSRNOG00000018023 | 0.17 | 0.15 | lasso | 61 | 0.16 | 6.5e-17 | 7.1 | 7.1 | 1.8e-12 | 0.99 | 0.41 | 0.59 | FALSE |
106 | NAcc | Pdlim2 | gene expression | ENSRNOG00000008543 | 0.17 | 0.06 | top1 | 1 | 0.06 | 1.7e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.04 | 0.06 | FALSE |
107 | NAcc | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.41 | 0.13 | blup | 637 | 0.15 | 2.6e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.36 | 0.57 | FALSE |
108 | NAcc | Dmtn | gene expression | ENSRNOG00000012273 | 0.24 | 0.12 | top1 | 1 | 0.12 | 1.1e-03 | 7.1 | -7.1 | 1.4e-12 | -0.98 | 0.04 | 0.06 | FALSE |
109 | NAcc | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.20 | 0.03 | enet | 4 | 0.06 | 1.8e-02 | 7.1 | 7.1 | 1.6e-12 | 1.00 | 0.17 | 0.33 | FALSE |
110 | NAcc | Ccar2 | gene expression | ENSRNOG00000018295 | 0.17 | 0.03 | blup | 718 | 0.07 | 1.3e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.19 | 0.27 | FALSE |
111 | NAcc | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.21 | 0.07 | enet | 19 | 0.08 | 7.1e-03 | 7.1 | 7.1 | 1.3e-12 | 0.99 | 0.16 | 0.33 | FALSE |
112 | NAcc | Bin3 | isoform ratio | ENSRNOT00000099631 | 0.19 | 0.06 | blup | 710 | 0.09 | 5.1e-03 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.24 | 0.34 | FALSE |
113 | NAcc | Bin3 | mRNA stability | ENSRNOG00000018023 | 0.29 | 0.12 | blup | 710 | 0.14 | 4.7e-04 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.35 | 0.50 | FALSE |
114 | NAcc2 | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.39 | 0.22 | enet | 134 | 0.23 | 1.6e-12 | 7.0 | 7.2 | 6.8e-13 | 0.99 | 0.39 | 0.61 | FALSE |
115 | NAcc2 | Lgi3 | gene expression | ENSRNOG00000011323 | 0.08 | 0.03 | top1 | 1 | 0.03 | 7.1e-03 | 7.0 | -7.0 | 1.9e-12 | -1.00 | 0.03 | 0.04 | FALSE |
116 | NAcc2 | Nudt18 | gene expression | ENSRNOG00000011831 | 0.20 | 0.04 | enet | 100 | 0.07 | 1.3e-04 | 7.2 | -6.7 | 2.4e-11 | -0.89 | 0.32 | 0.63 | FALSE |
117 | NAcc2 | Dmtn | gene expression | ENSRNOG00000012273 | 0.12 | 0.09 | top1 | 1 | 0.09 | 1.5e-05 | 7.0 | -7.0 | 1.9e-12 | -0.99 | 0.08 | 0.12 | FALSE |
118 | NAcc2 | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.07 | 0.02 | top1 | 1 | 0.03 | 1.6e-02 | 7.1 | 7.1 | 1.7e-12 | 1.00 | 0.02 | 0.04 | FALSE |
119 | NAcc2 | Chmp7 | gene expression | ENSRNOG00000016939 | 0.13 | 0.06 | enet | 454 | 0.06 | 4.4e-04 | 7.1 | 7.1 | 1.2e-12 | 0.99 | 0.30 | 0.66 | FALSE |
120 | NAcc2 | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.10 | 0.06 | top1 | 1 | 0.06 | 4.7e-04 | 7.0 | 7.0 | 1.9e-12 | 1.00 | 0.03 | 0.05 | FALSE |
121 | NAcc2 | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.10 | 0.04 | top1 | 1 | 0.04 | 3.4e-03 | 7.0 | 7.0 | 1.9e-12 | 1.00 | 0.02 | 0.05 | FALSE |
122 | NAcc2 | NA | gene expression | ENSRNOG00000067366 | 0.06 | 0.01 | blup | 167 | 0.02 | 1.8e-02 | 7.0 | -7.1 | 1.3e-12 | -1.00 | 0.07 | 0.40 | FALSE |
123 | NAcc2 | Egr3 | isoform ratio | ENSRNOT00000116948 | 0.06 | 0.03 | top1 | 1 | 0.04 | 5.7e-03 | 7.2 | 7.2 | 7.1e-13 | 1.00 | 0.03 | 0.04 | FALSE |
124 | NAcc2 | Ppp3cc | intron excision ratio | chr15:45338831:45359103 | 0.14 | 0.06 | blup | 639 | 0.06 | 2.2e-04 | 7.0 | -7.1 | 1.4e-12 | -1.00 | 0.38 | 0.59 | FALSE |
125 | NAcc2 | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.07 | 0.02 | enet | 65 | 0.02 | 2.1e-02 | 7.0 | 7.1 | 1.3e-12 | 1.00 | 0.24 | 0.37 | FALSE |
126 | OFC | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.45 | 0.15 | top1 | 1 | 0.15 | 1.8e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.08 | 0.12 | FALSE |
127 | OFC | Polr3d | gene expression | ENSRNOG00000010028 | 0.26 | 0.12 | top1 | 1 | 0.12 | 9.0e-04 | 7.1 | -7.1 | 1.3e-12 | -1.00 | 0.04 | 0.06 | FALSE |
128 | OFC | Lgi3 | gene expression | ENSRNOG00000011323 | 0.28 | 0.01 | blup | 643 | 0.01 | 2.1e-01 | 7.1 | -7.0 | 3.5e-12 | -0.95 | 0.16 | 0.30 | FALSE |
129 | OFC | Nudt18 | gene expression | ENSRNOG00000011831 | 0.27 | 0.07 | top1 | 1 | 0.07 | 1.1e-02 | 7.1 | -7.1 | 1.2e-12 | -1.00 | 0.04 | 0.06 | FALSE |
130 | OFC | Dmtn | gene expression | ENSRNOG00000012273 | 0.14 | 0.07 | top1 | 1 | 0.07 | 7.8e-03 | 7.1 | -7.1 | 1.2e-12 | -1.00 | 0.04 | 0.06 | FALSE |
131 | OFC | Dok2 | gene expression | ENSRNOG00000013922 | 0.15 | 0.08 | top1 | 1 | 0.08 | 7.1e-03 | 7.1 | 7.1 | 1.2e-12 | 0.99 | 0.04 | 0.06 | FALSE |
132 | OFC | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.25 | 0.12 | top1 | 1 | 0.12 | 7.9e-04 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.03 | 0.06 | FALSE |
133 | OFC | Ccar2 | gene expression | ENSRNOG00000018295 | 0.26 | 0.12 | blup | 721 | 0.13 | 5.1e-04 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.34 | 0.47 | FALSE |
134 | OFC | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.23 | 0.08 | top1 | 1 | 0.08 | 7.0e-03 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.03 | 0.06 | FALSE |
135 | OFC | Dmtn | intron excision ratio | chr15:45679395:45679904 | 0.11 | 0.13 | top1 | 1 | 0.13 | 6.2e-04 | 7.1 | 7.1 | 1.6e-12 | 0.99 | 0.04 | 0.06 | FALSE |
136 | OFC | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.17 | 0.08 | blup | 638 | 0.09 | 3.2e-03 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.27 | 0.42 | FALSE |
137 | OFC | Bin3 | mRNA stability | ENSRNOG00000018023 | 0.27 | 0.12 | lasso | 4 | 0.14 | 3.2e-04 | 6.9 | 7.0 | 3.6e-12 | 1.00 | 0.38 | 0.53 | FALSE |
138 | PL | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.72 | 0.36 | enet | 6 | 0.37 | 1.2e-09 | 7.0 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.61 | FALSE |
139 | PL | Slc39a14 | gene expression | ENSRNOG00000009832 | 0.16 | 0.12 | top1 | 1 | 0.12 | 8.5e-04 | 7.1 | -7.1 | 1.0e-12 | -1.00 | 0.03 | 0.06 | FALSE |
140 | PL | Nudt18 | gene expression | ENSRNOG00000011831 | 0.22 | 0.11 | blup | 656 | 0.14 | 4.3e-04 | 7.1 | -7.0 | 3.5e-12 | -0.95 | 0.26 | 0.50 | FALSE |
141 | PL | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.16 | 0.04 | blup | 435 | 0.05 | 2.4e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.15 | 0.34 | FALSE |
142 | PL | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.28 | 0.08 | blup | 527 | 0.11 | 1.6e-03 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.29 | 0.55 | FALSE |
143 | PL | Ccar2 | gene expression | ENSRNOG00000018295 | 0.21 | 0.10 | top1 | 1 | 0.10 | 2.9e-03 | 7.1 | 7.1 | 1.6e-12 | 1.00 | 0.04 | 0.06 | FALSE |
144 | PL | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.20 | 0.08 | top1 | 1 | 0.07 | 7.6e-03 | 7.1 | 7.1 | 1.5e-12 | 1.00 | 0.03 | 0.06 | FALSE |
145 | PL | Bin3 | isoform ratio | ENSRNOT00000024614 | 0.18 | 0.08 | top1 | 1 | 0.08 | 5.9e-03 | 7.1 | 7.1 | 1.3e-12 | 1.00 | 0.04 | 0.06 | FALSE |
146 | PL | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.36 | 0.17 | enet | 4 | 0.18 | 4.9e-05 | 7.0 | 7.0 | 2.5e-12 | 1.00 | 0.37 | 0.58 | FALSE |
147 | PL2 | Ppp3cc | alternative TSS | ENSRNOT00000100817 | 0.07 | 0.02 | blup | 639 | 0.02 | 1.9e-02 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.21 | 0.34 | FALSE |
148 | PL2 | R3hcc1 | alternative TSS | ENSRNOT00000022706 | 0.09 | 0.04 | top1 | 1 | 0.04 | 5.0e-03 | 7.1 | -7.1 | 1.7e-12 | -1.00 | 0.02 | 0.04 | FALSE |
149 | PL2 | R3hcc1 | alternative TSS | ENSRNOT00000101142 | 0.08 | 0.03 | top1 | 1 | 0.03 | 7.7e-03 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.02 | 0.04 | FALSE |
150 | PL2 | Ppp3cc | gene expression | ENSRNOG00000009745 | 0.55 | 0.33 | blup | 639 | 0.33 | 1.5e-18 | 7.0 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.61 | FALSE |
151 | PL2 | Slc39a14 | gene expression | ENSRNOG00000009832 | 0.06 | 0.01 | top1 | 1 | 0.01 | 6.3e-02 | 7.1 | -7.1 | 8.9e-13 | -1.00 | 0.03 | 0.04 | FALSE |
152 | PL2 | Polr3d | gene expression | ENSRNOG00000010028 | 0.07 | 0.03 | enet | 79 | 0.03 | 1.1e-02 | 7.1 | -7.4 | 1.9e-13 | -0.91 | 0.24 | 0.40 | TRUE |
153 | PL2 | Lgi3 | gene expression | ENSRNOG00000011323 | 0.06 | 0.02 | blup | 645 | 0.03 | 1.3e-02 | 7.1 | -7.1 | 1.4e-12 | -1.00 | 0.23 | 0.42 | FALSE |
154 | PL2 | Dmtn | gene expression | ENSRNOG00000012273 | 0.18 | 0.10 | blup | 685 | 0.12 | 5.9e-07 | 7.1 | -6.4 | 2.0e-10 | -0.93 | 0.34 | 0.66 | FALSE |
155 | PL2 | Gfra2 | gene expression | ENSRNOG00000014010 | 0.08 | 0.01 | blup | 871 | 0.02 | 4.0e-02 | 7.0 | 6.9 | 4.1e-12 | 0.94 | 0.21 | 0.40 | FALSE |
156 | PL2 | Entpd4 | gene expression | ENSRNOG00000016321 | 0.07 | 0.03 | enet | 103 | 0.03 | 7.5e-03 | 7.1 | -7.1 | 1.3e-12 | -0.99 | 0.13 | 0.40 | FALSE |
157 | PL2 | R3hcc1 | gene expression | ENSRNOG00000016777 | 0.09 | 0.04 | enet | 97 | 0.04 | 3.9e-03 | 7.1 | 7.1 | 1.4e-12 | 0.99 | 0.23 | 0.54 | FALSE |
158 | PL2 | Rhobtb2 | gene expression | ENSRNOG00000017373 | 0.42 | 0.23 | top1 | 1 | 0.23 | 1.6e-12 | 7.0 | 7.0 | 1.9e-12 | 1.00 | 0.42 | 0.58 | FALSE |
159 | PL2 | Tnfrsf10b | gene expression | ENSRNOG00000038483 | 0.07 | 0.02 | enet | 48 | 0.03 | 1.6e-02 | 7.0 | 7.1 | 1.4e-12 | 1.00 | 0.19 | 0.40 | FALSE |
160 | PL2 | Ppp3cc | intron excision ratio | chr15:45297492:45309209 | 0.06 | 0.01 | blup | 639 | 0.01 | 4.6e-02 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.20 | 0.31 | FALSE |
161 | PL2 | Phyhip | intron excision ratio | chr15:45535048:45538056 | 0.07 | 0.03 | blup | 572 | 0.03 | 8.7e-03 | 7.0 | -7.1 | 1.4e-12 | -1.00 | 0.21 | 0.37 | FALSE |
162 | PL2 | Ppp3cc | mRNA stability | ENSRNOG00000009745 | 0.19 | 0.07 | blup | 639 | 0.08 | 2.7e-05 | 7.1 | 7.1 | 1.4e-12 | 1.00 | 0.39 | 0.61 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.